RNA–Protein interactions for RNA: ENST00000503945.2

MED28-203, Transcript of mediator complex subunit 28, humanhuman

TSL 1 (best)

Gene MED28, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MED28-203ENST00000503945 L3MBTL2Q969R5 705 aa17.21■□□□□ 0.35
MED28-203ENST00000503945 NUDT16Q96DE0 195 aaKnown RBP17.21■□□□□ 0.35
MED28-203ENST00000503945 SIN3AQ96ST3 1273 aa17.21■□□□□ 0.35
MED28-203ENST00000503945 CDK19Q9BWU1 502 aa17.21■□□□□ 0.35
MED28-203ENST00000503945 A0A0G2JS52 829 aa17.2■□□□□ 0.34
MED28-203ENST00000503945 MYT1Q01538 1121 aa17.2■□□□□ 0.34
MED28-203ENST00000503945 ALS2Q96Q42 1657 aa17.2■□□□□ 0.34
MED28-203ENST00000503945 ADGRB2O60241 1585 aa17.19■□□□□ 0.34
MED28-203ENST00000503945 PAK3O75914 559 aaPredicted RBP17.19■□□□□ 0.34
MED28-203ENST00000503945 NRAPQ86VF7 1730 aa17.18■□□□□ 0.34
MED28-203ENST00000503945 CCDC61Q9Y6R9 512 aa17.17■□□□□ 0.34
MED28-203ENST00000503945 COL14A1Q05707 1796 aaKnown RBP17.17■□□□□ 0.34
MED28-203ENST00000503945 FAM182BQ5T319 152 aa17.16■□□□□ 0.34
MED28-203ENST00000503945 TULP4Q9NRJ4 1543 aa17.16■□□□□ 0.34
MED28-203ENST00000503945 BAG6P46379 1132 aa17.15■□□□□ 0.34
MED28-203ENST00000503945 SPATA31A5Q5VU36 1347 aa17.15■□□□□ 0.34
MED28-203ENST00000503945 SPATA31A7Q8IWB4 1347 aa17.15■□□□□ 0.34
MED28-203ENST00000503945 PSDA5PKW4 1024 aaPredicted RBP17.14■□□□□ 0.33
MED28-203ENST00000503945 SRPK2P78362 688 aaKnown RBP17.13■□□□□ 0.33
MED28-203ENST00000503945 EN1Q05925 392 aaPredicted RBP17.13■□□□□ 0.33
MED28-203ENST00000503945 NBPF8Q3BBV2 869 aa17.13■□□□□ 0.33
MED28-203ENST00000503945 CRYBG1Q9Y4K1 1723 aa17.13■□□□□ 0.33
MED28-203ENST00000503945 PRDM11Q9NQV5 511 aa17.12■□□□□ 0.33
MED28-203ENST00000503945 CENPJQ9HC77 1338 aaPredicted RBP17.12■□□□□ 0.33
MED28-203ENST00000503945 PLEKHG3A1L390 1219 aa17.11■□□□□ 0.33
MED28-203ENST00000503945 CHRNA2Q15822 529 aa17.1■□□□□ 0.33
MED28-203ENST00000503945 ACEP12821 1306 aa17.1■□□□□ 0.33
MED28-203ENST00000503945 ARHGEF28Q8N1W1 1705 aaKnown RBP17.1■□□□□ 0.33
MED28-203ENST00000503945 ZC3H6P61129 1189 aaKnown RBP17.09■□□□□ 0.33
MED28-203ENST00000503945 TRIM26Q12899 539 aaPredicted RBP17.09■□□□□ 0.33
MED28-203ENST00000503945 NUTM2GQ5VZR2 741 aa17.09■□□□□ 0.33
MED28-203ENST00000503945 CABP2Q9NPB3 220 aa17.09■□□□□ 0.33
MED28-203ENST00000503945 RGPD1P0DJD0 1748 aa17.08■□□□□ 0.32
MED28-203ENST00000503945 KIAA0232Q92628 1395 aa17.08■□□□□ 0.32
MED28-203ENST00000503945 SPATA31A1Q5TZJ5 1347 aa17.08■□□□□ 0.32
MED28-203ENST00000503945 STRN4Q9NRL3 753 aa17.08■□□□□ 0.32
MED28-203ENST00000503945 ITSN1Q15811 1721 aa17.07■□□□□ 0.32
MED28-203ENST00000503945 LRP5O75197 1615 aa17.07■□□□□ 0.32
MED28-203ENST00000503945 ABTB2Q8N961 1025 aa17.07■□□□□ 0.32
MED28-203ENST00000503945 THSD7AQ9UPZ6 1657 aa17.07■□□□□ 0.32
MED28-203ENST00000503945 ATP7BP35670 1465 aa17.06■□□□□ 0.32
MED28-203ENST00000503945 EZH2Q15910 746 aaKnown RBP17.06■□□□□ 0.32
MED28-203ENST00000503945 CABP1Q9NZU7 370 aa17.05■□□□□ 0.32
MED28-203ENST00000503945 PHRF1Q9P1Y6 1649 aaKnown RBP17.04■□□□□ 0.32
MED28-203ENST00000503945 EVC2Q86UK5 1308 aa17.04■□□□□ 0.32
MED28-203ENST00000503945 TRIM37O94972 964 aa17.04■□□□□ 0.32
MED28-203ENST00000503945 EVA1CP58658 441 aa17.04■□□□□ 0.32
MED28-203ENST00000503945 R3HDM1Q15032 1099 aaKnown RBP17.04■□□□□ 0.32
MED28-203ENST00000503945 POLR3AO14802 1390 aaPredicted RBP17.03■□□□□ 0.32
MED28-203ENST00000503945 ROCK2O75116 1388 aaKnown RBP17.03■□□□□ 0.32
MED28-203ENST00000503945 FAM196AQ6ZSG2 479 aa17.03■□□□□ 0.32
MED28-203ENST00000503945 NLRP13Q86W25 1043 aa17.03■□□□□ 0.32
MED28-203ENST00000503945 CAMKK2Q96RR4 588 aa17.03■□□□□ 0.32
MED28-203ENST00000503945 USP35Q9P2H5 1018 aa17.03■□□□□ 0.32
MED28-203ENST00000503945 TNS1Q9HBL0 1735 aaKnown RBP17.03■□□□□ 0.32
MED28-203ENST00000503945 KIAA1210Q9ULL0 1709 aa17.01■□□□□ 0.31
MED28-203ENST00000503945 DISP2A7MBM2 1401 aa17.01■□□□□ 0.31
MED28-203ENST00000503945 APBA3O96018 575 aa17■□□□□ 0.31
MED28-203ENST00000503945 LARP1Q6PKG0 1096 aaKnown RBP17■□□□□ 0.31
MED28-203ENST00000503945 BARGINQ6ZT62 677 aa17■□□□□ 0.31
MED28-203ENST00000503945 ZNF692Q9BU19 519 aaPredicted RBP17■□□□□ 0.31
MED28-203ENST00000503945 TOPAZ1Q8N9V7 1692 aa17■□□□□ 0.31
MED28-203ENST00000503945 PPIP5K1Q6PFW1 1433 aa16.99■□□□□ 0.31
MED28-203ENST00000503945 CARD11Q9BXL7 1154 aa16.99■□□□□ 0.31
MED28-203ENST00000503945 CAMTA1Q9Y6Y1 1673 aa16.99■□□□□ 0.31
MED28-203ENST00000503945 PDE3BQ13370 1112 aa16.98■□□□□ 0.31
MED28-203ENST00000503945 SSH2Q76I76 1423 aa16.97■□□□□ 0.31
MED28-203ENST00000503945 GCP02774 474 aa16.97■□□□□ 0.31
MED28-203ENST00000503945 NLRP6P59044 892 aa16.97■□□□□ 0.31
MED28-203ENST00000503945 TONSLQ96HA7 1378 aa16.97■□□□□ 0.31
MED28-203ENST00000503945 TCP11L2Q8N4U5 519 aa16.96■□□□□ 0.31
MED28-203ENST00000503945 BRD4O60885 1362 aaPredicted RBP16.96■□□□□ 0.31
MED28-203ENST00000503945 CPDO75976 1380 aa16.95■□□□□ 0.3
MED28-203ENST00000503945 USP19O94966 1318 aa16.95■□□□□ 0.3
MED28-203ENST00000503945 LMO7Q8WWI1 1683 aa16.94■□□□□ 0.3
MED28-203ENST00000503945 NRKQ7Z2Y5 1582 aa16.94■□□□□ 0.3
MED28-203ENST00000503945 THRAP3Q9Y2W1 955 aaKnown RBP16.92■□□□□ 0.3
MED28-203ENST00000503945 PARD3Q8TEW0 1356 aa16.91■□□□□ 0.3
MED28-203ENST00000503945 ZBTB7CA1YPR0 619 aa16.9■□□□□ 0.3
MED28-203ENST00000503945 SLC24A1O60721 1099 aa16.9■□□□□ 0.3
MED28-203ENST00000503945 RREB1Q92766 1687 aa16.9■□□□□ 0.3
MED28-203ENST00000503945 NBPF14Q5TI25 921 aa16.89■□□□□ 0.29
MED28-203ENST00000503945 TMC1Q8TDI8 760 aa16.89■□□□□ 0.29
MED28-203ENST00000503945 NUP188Q5SRE5 1749 aa16.89■□□□□ 0.29
MED28-203ENST00000503945 COL5A2P05997 1499 aaPredicted RBP16.88■□□□□ 0.29
MED28-203ENST00000503945 KCNH5Q8NCM2 988 aa16.88■□□□□ 0.29
MED28-203ENST00000503945 TTC21BQ7Z4L5 1316 aa16.88■□□□□ 0.29
MED28-203ENST00000503945 USP6P35125 1406 aa16.87■□□□□ 0.29
MED28-203ENST00000503945 QRICH2Q9H0J4 1663 aa16.87■□□□□ 0.29
MED28-203ENST00000503945 PARP4Q9UKK3 1724 aaKnown RBP16.87■□□□□ 0.29
MED28-203ENST00000503945 TTC21AQ8NDW8 1320 aa16.86■□□□□ 0.29
MED28-203ENST00000503945 SBF2Q86WG5 1849 aa16.86■□□□□ 0.29
MED28-203ENST00000503945 CRB1P82279 1406 aa16.86■□□□□ 0.29
MED28-203ENST00000503945 TRPM1Q7Z4N2 1603 aa16.85■□□□□ 0.29
MED28-203ENST00000503945 COL18A1P39060 1754 aa16.85■□□□□ 0.29
MED28-203ENST00000503945 HDGFL2Q7Z4V5 671 aaPredicted RBP16.85■□□□□ 0.29
MED28-203ENST00000503945 PUS7Q96PZ0 661 aaKnown RBP16.85■□□□□ 0.29
MED28-203ENST00000503945 AXIN2Q9Y2T1 843 aa16.85■□□□□ 0.29
MED28-203ENST00000503945 AATKQ6ZMQ8 1374 aa16.85■□□□□ 0.29
MED28-203ENST00000503945 KTN1Q86UP2 1357 aaKnown RBP16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 127.3 ms