RNA–Protein interactions for RNA: ENST00000497544.2

CTSD-206, Transcript of cathepsin D, humanhuman

TSL 2

Gene CTSD, Length 783 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSD-206ENST00000497544 ORAI2Q96SN7 254 aa27.89■■■□□ 2.06
CTSD-206ENST00000497544 CCDC61Q9Y6R9 512 aa27.89■■■□□ 2.06
CTSD-206ENST00000497544 PRR36Q9H6K5 1346 aa27.89■■■□□ 2.05
CTSD-206ENST00000497544 RGPD8O14715 1765 aaPredicted RBP27.88■■■□□ 2.05
CTSD-206ENST00000497544 YY1P25490 414 aa27.86■■■□□ 2.05
CTSD-206ENST00000497544 POLR3GLQ9BT43 218 aa27.86■■■□□ 2.05
CTSD-206ENST00000497544 PHF8Q9UPP1 1060 aa27.84■■■□□ 2.05
CTSD-206ENST00000497544 PMFBP1Q8TBY8 1022 aa27.83■■■□□ 2.05
CTSD-206ENST00000497544 ATP7BP35670 1465 aa27.83■■■□□ 2.04
CTSD-206ENST00000497544 USP32Q8NFA0 1604 aa27.82■■■□□ 2.04
CTSD-206ENST00000497544 TMC1Q8TDI8 760 aa27.82■■■□□ 2.04
CTSD-206ENST00000497544 C11orf95C9JLR9 678 aaPredicted RBP27.81■■■□□ 2.04
CTSD-206ENST00000497544 CABP1Q9NZU7 370 aa27.81■■■□□ 2.04
CTSD-206ENST00000497544 NGDNQ8NEJ9 315 aaKnown RBP27.79■■■□□ 2.04
CTSD-206ENST00000497544 ITSN1Q15811 1721 aa27.78■■■□□ 2.04
CTSD-206ENST00000497544 PPIP5K1Q6PFW1 1433 aa27.78■■■□□ 2.04
CTSD-206ENST00000497544 PLEKHG3A1L390 1219 aa27.78■■■□□ 2.04
CTSD-206ENST00000497544 FOXO3O43524 673 aa27.77■■■□□ 2.04
CTSD-206ENST00000497544 SLC12A5Q9H2X9 1139 aa27.76■■■□□ 2.03
CTSD-206ENST00000497544 SLIT2O94813 1529 aa27.76■■■□□ 2.03
CTSD-206ENST00000497544 PSME1Q06323 249 aa27.74■■■□□ 2.03
CTSD-206ENST00000497544 UNC5CLQ8IV45 518 aa27.74■■■□□ 2.03
CTSD-206ENST00000497544 ACEP12821 1306 aa27.73■■■□□ 2.03
CTSD-206ENST00000497544 KIF7Q2M1P5 1343 aa27.73■■■□□ 2.03
CTSD-206ENST00000497544 SEPT12Q8IYM1 358 aa27.73■■■□□ 2.03
CTSD-206ENST00000497544 NPHP3Q7Z494 1330 aa27.72■■■□□ 2.03
CTSD-206ENST00000497544 KIF1AQ12756 1690 aa27.72■■■□□ 2.03
CTSD-206ENST00000497544 TOPAZ1Q8N9V7 1692 aa27.72■■■□□ 2.03
CTSD-206ENST00000497544 NINLQ9Y2I6 1382 aa27.72■■■□□ 2.03
CTSD-206ENST00000497544 PXDNQ92626 1479 aa27.71■■■□□ 2.03
CTSD-206ENST00000497544 BAG6P46379 1132 aa27.71■■■□□ 2.03
CTSD-206ENST00000497544 KRT28Q7Z3Y7 464 aa27.7■■■□□ 2.02
CTSD-206ENST00000497544 HDGFL2Q7Z4V5 671 aaPredicted RBP27.7■■■□□ 2.02
CTSD-206ENST00000497544 ZNF692Q9BU19 519 aaPredicted RBP27.7■■■□□ 2.02
CTSD-206ENST00000497544 CCDC7Q96M83 1385 aa27.7■■■□□ 2.02
CTSD-206ENST00000497544 R3HDM1Q15032 1099 aaKnown RBP27.69■■■□□ 2.02
CTSD-206ENST00000497544 TERF2IPQ9NYB0 399 aa27.69■■■□□ 2.02
CTSD-206ENST00000497544 WASHC2AQ641Q2 1341 aa27.68■■■□□ 2.02
CTSD-206ENST00000497544 XPCQ01831 940 aaPredicted RBP27.68■■■□□ 2.02
CTSD-206ENST00000497544 POLR3AO14802 1390 aaPredicted RBP27.67■■■□□ 2.02
CTSD-206ENST00000497544 ZNF316A6NFI3 1004 aaPredicted RBP27.66■■■□□ 2.02
CTSD-206ENST00000497544 RGPD1P0DJD0 1748 aa27.65■■■□□ 2.02
CTSD-206ENST00000497544 KRT27Q7Z3Y8 459 aa27.65■■■□□ 2.02
CTSD-206ENST00000497544 IFFO2Q5TF58 517 aa27.64■■■□□ 2.02
CTSD-206ENST00000497544 KTN1Q86UP2 1357 aaKnown RBP27.61■■■□□ 2.01
CTSD-206ENST00000497544 CPSF1Q10570 1443 aaKnown RBP27.61■■■□□ 2.01
CTSD-206ENST00000497544 PAK3O75914 559 aaPredicted RBP27.61■■■□□ 2.01
CTSD-206ENST00000497544 EN1Q05925 392 aaPredicted RBP27.61■■■□□ 2.01
CTSD-206ENST00000497544 PLCH1Q4KWH8 1693 aa27.61■■■□□ 2.01
CTSD-206ENST00000497544 ANKRD36BQ8N2N9 1353 aa27.6■■■□□ 2.01
CTSD-206ENST00000497544 ONECUT3O60422 494 aaPredicted RBP27.59■■■□□ 2.01
CTSD-206ENST00000497544 PANK3Q9H999 370 aa27.59■■■□□ 2.01
CTSD-206ENST00000497544 AKAP12Q02952 1782 aa27.58■■■□□ 2.01
CTSD-206ENST00000497544 MYOM1P52179 1685 aa27.58■■■□□ 2.01
CTSD-206ENST00000497544 A0A1W2PP64 1363 aa27.58■■■□□ 2.01
CTSD-206ENST00000497544 TNS1Q9HBL0 1735 aaKnown RBP27.58■■■□□ 2.01
CTSD-206ENST00000497544 NWD2Q9ULI1 1742 aa27.58■■■□□ 2.01
CTSD-206ENST00000497544 USP6P35125 1406 aa27.58■■■□□ 2
CTSD-206ENST00000497544 CD163L1Q9NR16 1453 aa27.57■■■□□ 2
CTSD-206ENST00000497544 LMOD2Q6P5Q4 547 aa27.57■■■□□ 2
CTSD-206ENST00000497544 BRD4O60885 1362 aaPredicted RBP27.57■■■□□ 2
CTSD-206ENST00000497544 VPS72Q15906 364 aa27.56■■■□□ 2
CTSD-206ENST00000497544 SBNO1A3KN83 1393 aa27.55■■■□□ 2
CTSD-206ENST00000497544 SPATA31A3Q5VYP0 1347 aa27.54■■■□□ 2
CTSD-206ENST00000497544 TTC21BQ7Z4L5 1316 aa27.53■■■□□ 2
CTSD-206ENST00000497544 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.53■■■□□ 2
CTSD-206ENST00000497544 CARD14Q9BXL6 1004 aa27.52■■■□□ 2
CTSD-206ENST00000497544 DISP2A7MBM2 1401 aa27.51■■□□□ 1.99
CTSD-206ENST00000497544 ABTB2Q8N961 1025 aa27.51■■□□□ 1.99
CTSD-206ENST00000497544 EDC4Q6P2E9 1401 aaKnown RBP27.5■■□□□ 1.99
CTSD-206ENST00000497544 MON2Q7Z3U7 1717 aa27.5■■□□□ 1.99
CTSD-206ENST00000497544 TTC21AQ8NDW8 1320 aa27.5■■□□□ 1.99
CTSD-206ENST00000497544 CCDC9Q9Y3X0 531 aaKnown RBP27.49■■□□□ 1.99
CTSD-206ENST00000497544 TRPM3Q9HCF6 1732 aaPredicted RBP27.49■■□□□ 1.99
CTSD-206ENST00000497544 SSH2Q76I76 1423 aa27.49■■□□□ 1.99
CTSD-206ENST00000497544 DDX10Q13206 875 aaKnown RBP27.48■■□□□ 1.99
CTSD-206ENST00000497544 TNS3Q68CZ2 1445 aa27.48■■□□□ 1.99
CTSD-206ENST00000497544 KNSTRNQ9Y448 316 aa27.47■■□□□ 1.99
CTSD-206ENST00000497544 ARHGEF10O15013 1369 aa27.47■■□□□ 1.99
CTSD-206ENST00000497544 NUTM2GQ5VZR2 741 aa27.46■■□□□ 1.99
CTSD-206ENST00000497544 NSD3Q9BZ95 1437 aa27.46■■□□□ 1.99
CTSD-206ENST00000497544 ABCA3Q99758 1704 aa27.45■■□□□ 1.99
CTSD-206ENST00000497544 NLRP6P59044 892 aa27.45■■□□□ 1.98
CTSD-206ENST00000497544 EZH2Q15910 746 aaKnown RBP27.45■■□□□ 1.98
CTSD-206ENST00000497544 NLRP13Q86W25 1043 aa27.45■■□□□ 1.98
CTSD-206ENST00000497544 CAMTA1Q9Y6Y1 1673 aa27.45■■□□□ 1.98
CTSD-206ENST00000497544 A0A0G2JS52 829 aa27.44■■□□□ 1.98
CTSD-206ENST00000497544 PLEKHG5O94827 1062 aa27.44■■□□□ 1.98
CTSD-206ENST00000497544 MYT1Q01538 1121 aa27.44■■□□□ 1.98
CTSD-206ENST00000497544 NME9Q86XW9 330 aa27.44■■□□□ 1.98
CTSD-206ENST00000497544 SENP3-EIF4A1A0A087X0R7 540 aa27.43■■□□□ 1.98
CTSD-206ENST00000497544 NRAPQ86VF7 1730 aa27.43■■□□□ 1.98
CTSD-206ENST00000497544 CGNL1Q0VF96 1302 aa27.42■■□□□ 1.98
CTSD-206ENST00000497544 ALS2Q96Q42 1657 aa27.41■■□□□ 1.98
CTSD-206ENST00000497544 NRKQ7Z2Y5 1582 aa27.41■■□□□ 1.98
CTSD-206ENST00000497544 FAM182BQ5T319 152 aa27.41■■□□□ 1.98
CTSD-206ENST00000497544 FYB1O15117 783 aa27.4■■□□□ 1.98
CTSD-206ENST00000497544 PER1O15534 1290 aaPredicted RBP27.4■■□□□ 1.98
CTSD-206ENST00000497544 FAM98CQ17RN3 349 aaKnown RBP27.39■■□□□ 1.98
CTSD-206ENST00000497544 RREB1Q92766 1687 aa27.39■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms