RNA–Protein interactions for RNA: ENST00000497498.1

CBX3-208, Transcript of chromobox 3, humanhuman

TSL 2

Gene CBX3, Length 922 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-208ENST00000497498 LINC01559Q495D7 138 aa8.87□□□□□ -0.99
CBX3-208ENST00000497498 NUTM2BA6NNL0 878 aaPredicted RBP8.86□□□□□ -0.99
CBX3-208ENST00000497498 NUTM2EB1AL46 878 aaPredicted RBP8.86□□□□□ -0.99
CBX3-208ENST00000497498 PER1O15534 1290 aaPredicted RBP8.86□□□□□ -0.99
CBX3-208ENST00000497498 CTHP32929 405 aa8.86□□□□□ -0.99
CBX3-208ENST00000497498 CLK2P49760 499 aaKnown RBP8.86□□□□□ -0.99
CBX3-208ENST00000497498 NUTM2DQ5VT03 806 aaPredicted RBP8.86□□□□□ -0.99
CBX3-208ENST00000497498 NUTM2AQ8IVF1 878 aaPredicted RBP8.86□□□□□ -0.99
CBX3-208ENST00000497498 MAP10Q9P2G4 905 aa8.86□□□□□ -0.99
CBX3-208ENST00000497498 GMPR2Q9P2T1 348 aaKnown RBP8.86□□□□□ -0.99
CBX3-208ENST00000497498 VARSP26640 1264 aaKnown RBP8.85□□□□□ -0.99
CBX3-208ENST00000497498 MPNDQ8N594 471 aa8.85□□□□□ -0.99
CBX3-208ENST00000497498 RTL5Q5HYW3 569 aaPredicted RBP8.84□□□□□ -0.99
CBX3-208ENST00000497498 ATP13A2Q9NQ11 1180 aa8.84□□□□□ -0.99
CBX3-208ENST00000497498 POLR3EQ9NVU0 708 aa8.84□□□□□ -0.99
CBX3-208ENST00000497498 C11orf95C9JLR9 678 aaPredicted RBP8.83□□□□□ -1
CBX3-208ENST00000497498 KDM4CQ9H3R0 1056 aa8.83□□□□□ -1
CBX3-208ENST00000497498 GPBP1L1Q9HC44 474 aaPredicted RBP8.82□□□□□ -1
CBX3-208ENST00000497498 WASF2Q9Y6W5 498 aa8.82□□□□□ -1
CBX3-208ENST00000497498 SKIV2LQ15477 1246 aaKnown RBP8.81□□□□□ -1
CBX3-208ENST00000497498 HELBQ8NG08 1087 aaPredicted RBP8.81□□□□□ -1
CBX3-208ENST00000497498 TSC1Q92574 1164 aa8.81□□□□□ -1
CBX3-208ENST00000497498 TLL2Q9Y6L7 1015 aa8.81□□□□□ -1
CBX3-208ENST00000497498 PLEKHG3A1L390 1219 aa8.8□□□□□ -1
CBX3-208ENST00000497498 SH3D19Q5HYK7 790 aa8.8□□□□□ -1
CBX3-208ENST00000497498 FOXJ1Q92949 421 aa8.8□□□□□ -1
CBX3-208ENST00000497498 DDRGK1Q96HY6 314 aa8.8□□□□□ -1
CBX3-208ENST00000497498 FAM117AQ9C073 453 aa8.8□□□□□ -1
CBX3-208ENST00000497498 FAM174AQ8TBP5 190 aa8.79□□□□□ -1
CBX3-208ENST00000497498 TRIM47Q96LD4 638 aa8.79□□□□□ -1
CBX3-208ENST00000497498 SENP2Q9HC62 589 aa8.79□□□□□ -1
CBX3-208ENST00000497498 ARMC2Q8NEN0 867 aa8.78□□□□□ -1
CBX3-208ENST00000497498 CDK15Q96Q40 435 aa8.78□□□□□ -1
CBX3-208ENST00000497498 CAPN5O15484 640 aaPredicted RBP8.77□□□□□ -1.01
CBX3-208ENST00000497498 SNRPBP14678 240 aaKnown RBP8.77□□□□□ -1.01
CBX3-208ENST00000497498 C4orf48Q5BLP8 95 aa8.77□□□□□ -1.01
CBX3-208ENST00000497498 LCE2AQ5TA79 106 aaPredicted RBP8.77□□□□□ -1.01
CBX3-208ENST00000497498 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.77□□□□□ -1.01
CBX3-208ENST00000497498 CTDSPL2Q05D32 466 aa8.76□□□□□ -1.01
CBX3-208ENST00000497498 TREML4Q6UXN2 200 aa8.76□□□□□ -1.01
CBX3-208ENST00000497498 BPHLQ86WA6 291 aaPredicted RBP8.76□□□□□ -1.01
CBX3-208ENST00000497498 KIFC2Q96AC6 838 aa8.76□□□□□ -1.01
CBX3-208ENST00000497498 ADH1CP00326 375 aa8.75□□□□□ -1.01
CBX3-208ENST00000497498 NNTQ13423 1086 aa8.75□□□□□ -1.01
CBX3-208ENST00000497498 FBXO31Q5XUX0 539 aaPredicted RBP8.75□□□□□ -1.01
CBX3-208ENST00000497498 PPP2R2DQ66LE6 453 aa8.75□□□□□ -1.01
CBX3-208ENST00000497498 SH3RF1Q7Z6J0 888 aa8.75□□□□□ -1.01
CBX3-208ENST00000497498 PROCA1Q8NCQ7 364 aaPredicted RBP8.75□□□□□ -1.01
CBX3-208ENST00000497498 NBPF14Q5TI25 921 aa8.74□□□□□ -1.01
CBX3-208ENST00000497498 TRIM46Q7Z4K8 759 aa8.74□□□□□ -1.01
CBX3-208ENST00000497498 C1QTNF2Q9BXJ5 285 aa8.74□□□□□ -1.01
CBX3-208ENST00000497498 KLF16Q9BXK1 252 aaPredicted RBP8.74□□□□□ -1.01
CBX3-208ENST00000497498 AGERQ15109 404 aa8.73□□□□□ -1.01
CBX3-208ENST00000497498 SH3BP5LQ7L8J4 393 aa8.73□□□□□ -1.01
CBX3-208ENST00000497498 BMP1P13497 986 aa8.72□□□□□ -1.01
CBX3-208ENST00000497498 GRM5P41594 1212 aa8.72□□□□□ -1.01
CBX3-208ENST00000497498 GPKOWQ92917 476 aaPredicted RBP eCLIP8.72□□□□□ -1.018e-6■■□□□ 13.6
CBX3-208ENST00000497498 TIMP2P16035 220 aa8.71□□□□□ -1.02
CBX3-208ENST00000497498 NR5A1Q13285 461 aa8.71□□□□□ -1.02
CBX3-208ENST00000497498 ARID5BQ14865 1188 aa8.71□□□□□ -1.02
CBX3-208ENST00000497498 LRRN4Q8WUT4 740 aa8.71□□□□□ -1.02
CBX3-208ENST00000497498 WDR4P57081 412 aaKnown RBP8.7□□□□□ -1.02
CBX3-208ENST00000497498 NFX1Q12986 1120 aaKnown RBP8.7□□□□□ -1.02
CBX3-208ENST00000497498 TRMT44Q8IYL2 757 aaKnown RBP8.7□□□□□ -1.02
CBX3-208ENST00000497498 WFS1O76024 890 aa8.69□□□□□ -1.02
CBX3-208ENST00000497498 MAP4K5Q9Y4K4 846 aa8.69□□□□□ -1.02
CBX3-208ENST00000497498 NR3C2P08235 984 aa8.68□□□□□ -1.02
CBX3-208ENST00000497498 PDXDC2PQ6P474 469 aa8.68□□□□□ -1.02
CBX3-208ENST00000497498 GOPCQ9HD26 462 aa8.68□□□□□ -1.02
CBX3-208ENST00000497498 MRPL14Q6P1L8 145 aaKnown RBP8.67□□□□□ -1.02
CBX3-208ENST00000497498 ZFP42Q96MM3 310 aa8.67□□□□□ -1.02
CBX3-208ENST00000497498 FKBPLQ9UIM3 349 aa8.67□□□□□ -1.02
CBX3-208ENST00000497498 MAGEB6P1A0A0J9YX57 407 aa8.66□□□□□ -1.02
CBX3-208ENST00000497498 TERTO14746 1132 aaKnown RBP8.66□□□□□ -1.02
CBX3-208ENST00000497498 ATP1B4Q9UN42 357 aaPredicted RBP8.66□□□□□ -1.02
CBX3-208ENST00000497498 ZC3H4Q9UPT8 1303 aaKnown RBP8.65□□□□□ -1.02
CBX3-208ENST00000497498 AP1G2O75843 785 aa8.65□□□□□ -1.02
CBX3-208ENST00000497498 ZIC2O95409 532 aaPredicted RBP8.65□□□□□ -1.02
CBX3-208ENST00000497498 NR6A1Q15406 480 aa8.65□□□□□ -1.02
CBX3-208ENST00000497498 ERFEQ4G0M1 354 aa8.65□□□□□ -1.02
CBX3-208ENST00000497498 ITPKCQ96DU7 683 aa8.65□□□□□ -1.02
CBX3-208ENST00000497498 ZFAND3Q9H8U3 227 aa8.65□□□□□ -1.02
CBX3-208ENST00000497498 VASH1Q7L8A9 365 aaPredicted RBP8.64□□□□□ -1.03
CBX3-208ENST00000497498 CARD14Q9BXL6 1004 aa8.64□□□□□ -1.03
CBX3-208ENST00000497498 RFC5P40937 340 aa8.63□□□□□ -1.03
CBX3-208ENST00000497498 SCARF1Q14162 830 aa8.63□□□□□ -1.03
CBX3-208ENST00000497498 LCE2CQ5TA81 110 aa8.63□□□□□ -1.03
CBX3-208ENST00000497498 ARHGAP9Q9BRR9 750 aa8.63□□□□□ -1.03
CBX3-208ENST00000497498 USP17L8P0C7I0 530 aa8.62□□□□□ -1.03
CBX3-208ENST00000497498 FSHRP23945 695 aa8.62□□□□□ -1.03
CBX3-208ENST00000497498 NEUROD2Q15784 382 aa8.62□□□□□ -1.03
CBX3-208ENST00000497498 PURBQ96QR8 312 aaKnown RBP8.62□□□□□ -1.03
CBX3-208ENST00000497498 OCSTAMPQ9BR26 566 aa8.62□□□□□ -1.03
CBX3-208ENST00000497498 WIPF1O43516 503 aa8.61□□□□□ -1.03
CBX3-208ENST00000497498 NPAS3Q8IXF0 933 aa8.61□□□□□ -1.03
CBX3-208ENST00000497498 EPS8L1Q8TE68 723 aa8.61□□□□□ -1.03
CBX3-208ENST00000497498 PCMTD1Q96MG8 357 aaPredicted RBP8.61□□□□□ -1.03
CBX3-208ENST00000497498 HMX1Q9NP08 348 aaPredicted RBP8.61□□□□□ -1.03
CBX3-208ENST00000497498 NXF1Q9UBU9 619 aaKnown RBP8.61□□□□□ -1.03
CBX3-208ENST00000497498 GPSM3Q9Y4H4 160 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms