RNA–Protein interactions for RNA: ENST00000495817.1

CCDC39-207, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 1,047 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-207ENST00000495817 PRR20AP86496 221 aa11.77□□□□□ -0.53
CCDC39-207ENST00000495817 NBPF14Q5TI25 921 aa11.77□□□□□ -0.53
CCDC39-207ENST00000495817 PNMA1Q8ND90 353 aa11.77□□□□□ -0.53
CCDC39-207ENST00000495817 LAPTM4AQ15012 233 aa11.76□□□□□ -0.53
CCDC39-207ENST00000495817 GPKOWQ92917 476 aaPredicted RBP eCLIP11.76□□□□□ -0.53
CCDC39-207ENST00000495817 ZC3H4Q9UPT8 1303 aaKnown RBP11.76□□□□□ -0.53
CCDC39-207ENST00000495817 WNT7AO00755 349 aa11.75□□□□□ -0.53
CCDC39-207ENST00000495817 ZNF511Q8NB15 262 aa11.75□□□□□ -0.53
CCDC39-207ENST00000495817 IRX2Q9BZI1 471 aaPredicted RBP11.74□□□□□ -0.53
CCDC39-207ENST00000495817 GDF9O60383 454 aa11.72□□□□□ -0.53
CCDC39-207ENST00000495817 SH3BP2P78314 561 aa11.72□□□□□ -0.53
CCDC39-207ENST00000495817 SKOR1P84550 965 aa11.72□□□□□ -0.53
CCDC39-207ENST00000495817 TRIM67Q6ZTA4 783 aa11.72□□□□□ -0.53
CCDC39-207ENST00000495817 BAP1Q92560 729 aa11.72□□□□□ -0.53
CCDC39-207ENST00000495817 HMX1Q9NP08 348 aaPredicted RBP11.72□□□□□ -0.53
CCDC39-207ENST00000495817 PKD2L1Q9P0L9 805 aa11.72□□□□□ -0.53
CCDC39-207ENST00000495817 FKBPLQ9UIM3 349 aa11.72□□□□□ -0.53
CCDC39-207ENST00000495817 PDZRN3Q9UPQ7 1066 aa11.72□□□□□ -0.53
CCDC39-207ENST00000495817 NR6A1Q15406 480 aa11.71□□□□□ -0.53
CCDC39-207ENST00000495817 NRG2O14511 850 aaPredicted RBP11.7□□□□□ -0.54
CCDC39-207ENST00000495817 LINC01559Q495D7 138 aa11.7□□□□□ -0.54
CCDC39-207ENST00000495817 FOXC1Q12948 553 aa11.69□□□□□ -0.54
CCDC39-207ENST00000495817 RC3H1Q5TC82 1133 aaKnown RBP11.69□□□□□ -0.54
CCDC39-207ENST00000495817 BPHLQ86WA6 291 aaPredicted RBP11.69□□□□□ -0.54
CCDC39-207ENST00000495817 MTMR14Q8NCE2 650 aa11.69□□□□□ -0.54
CCDC39-207ENST00000495817 EHBP1Q8NDI1 1231 aa11.68□□□□□ -0.54
CCDC39-207ENST00000495817 GJD4Q96KN9 370 aaPredicted RBP11.68□□□□□ -0.54
CCDC39-207ENST00000495817 TRIM34Q9BYJ4 488 aa11.68□□□□□ -0.54
CCDC39-207ENST00000495817 VARSP26640 1264 aaKnown RBP11.67□□□□□ -0.54
CCDC39-207ENST00000495817 PDXDC2PQ6P474 469 aa11.67□□□□□ -0.54
CCDC39-207ENST00000495817 MRGPRX2Q96LB1 330 aa11.67□□□□□ -0.54
CCDC39-207ENST00000495817 GPSM3Q9Y4H4 160 aa11.67□□□□□ -0.54
CCDC39-207ENST00000495817 TNFRSF10AO00220 468 aa11.66□□□□□ -0.54
CCDC39-207ENST00000495817 GFRA3O60609 400 aa11.66□□□□□ -0.54
CCDC39-207ENST00000495817 SH3BP5LQ7L8J4 393 aa11.66□□□□□ -0.54
CCDC39-207ENST00000495817 CYP4X1Q8N118 509 aa11.65□□□□□ -0.54
CCDC39-207ENST00000495817 EPS8L1Q8TE68 723 aa11.65□□□□□ -0.54
CCDC39-207ENST00000495817 PRM3Q9NNZ6 103 aa11.65□□□□□ -0.54
CCDC39-207ENST00000495817 SNRKQ9NRH2 765 aa11.65□□□□□ -0.54
CCDC39-207ENST00000495817 NDUFB9Q9Y6M9 179 aa11.65□□□□□ -0.54
CCDC39-207ENST00000495817 MCM6Q14566 821 aa11.64□□□□□ -0.55
CCDC39-207ENST00000495817 SH3RF1Q7Z6J0 888 aa11.64□□□□□ -0.55
CCDC39-207ENST00000495817 SNIP1Q8TAD8 396 aaKnown RBP11.64□□□□□ -0.55
CCDC39-207ENST00000495817 TOR4AQ9NXH8 423 aa11.64□□□□□ -0.55
CCDC39-207ENST00000495817 FLIIQ13045 1269 aa11.63□□□□□ -0.55
CCDC39-207ENST00000495817 AGERQ15109 404 aa11.63□□□□□ -0.55
CCDC39-207ENST00000495817 MPNDQ8N594 471 aa11.63□□□□□ -0.55
CCDC39-207ENST00000495817 FAM174AQ8TBP5 190 aa11.63□□□□□ -0.55
CCDC39-207ENST00000495817 FOXJ1Q92949 421 aa11.62□□□□□ -0.55
CCDC39-207ENST00000495817 PTK2Q05397 1052 aa11.61□□□□□ -0.55
CCDC39-207ENST00000495817 C1QTNF2Q9BXJ5 285 aa11.61□□□□□ -0.55
CCDC39-207ENST00000495817 TTC24A2A3L6 582 aaPredicted RBP11.6□□□□□ -0.55
CCDC39-207ENST00000495817 SIAH2O43255 324 aa11.6□□□□□ -0.55
CCDC39-207ENST00000495817 ARHGAP9Q9BRR9 750 aa11.6□□□□□ -0.55
CCDC39-207ENST00000495817 C4orf48Q5BLP8 95 aa11.59□□□□□ -0.55
CCDC39-207ENST00000495817 TRMT44Q8IYL2 757 aaKnown RBP11.59□□□□□ -0.55
CCDC39-207ENST00000495817 DGAT1O75907 488 aa11.58□□□□□ -0.56
CCDC39-207ENST00000495817 MAGEB6P1A0A0J9YX57 407 aa11.57□□□□□ -0.56
CCDC39-207ENST00000495817 PKDCCQ504Y2 493 aa11.56□□□□□ -0.56
CCDC39-207ENST00000495817 CDK15Q96Q40 435 aa11.56□□□□□ -0.56
CCDC39-207ENST00000495817 MAP4K5Q9Y4K4 846 aa11.56□□□□□ -0.56
CCDC39-207ENST00000495817 GPR37L1O60883 481 aa11.55□□□□□ -0.56
CCDC39-207ENST00000495817 ZBTB33Q86T24 672 aa11.55□□□□□ -0.56
CCDC39-207ENST00000495817 CARD14Q9BXL6 1004 aa11.55□□□□□ -0.56
CCDC39-207ENST00000495817 CDV3Q9UKY7 258 aaKnown RBP11.55□□□□□ -0.56
CCDC39-207ENST00000495817 TLL2Q9Y6L7 1015 aa11.55□□□□□ -0.56
CCDC39-207ENST00000495817 FAM187AA6NFU0 413 aa11.54□□□□□ -0.56
CCDC39-207ENST00000495817 ZBBXA8MT70 800 aa11.54□□□□□ -0.56
CCDC39-207ENST00000495817 ALDH1A1P00352 501 aa11.54□□□□□ -0.56
CCDC39-207ENST00000495817 ERFEQ4G0M1 354 aa11.54□□□□□ -0.56
CCDC39-207ENST00000495817 ZNF592Q92610 1267 aa11.54□□□□□ -0.56
CCDC39-207ENST00000495817 SLC10A4Q96EP9 437 aa11.54□□□□□ -0.56
CCDC39-207ENST00000495817 OCSTAMPQ9BR26 566 aa11.53□□□□□ -0.56
CCDC39-207ENST00000495817 TBC1D2BQ9UPU7 963 aa11.53□□□□□ -0.56
CCDC39-207ENST00000495817 ADH1CP00326 375 aa11.52□□□□□ -0.57
CCDC39-207ENST00000495817 SMPD1P17405 629 aa11.52□□□□□ -0.57
CCDC39-207ENST00000495817 ADAM32Q8TC27 787 aa11.52□□□□□ -0.57
CCDC39-207ENST00000495817 WASF2Q9Y6W5 498 aa11.52□□□□□ -0.57
CCDC39-207ENST00000495817 J3QL48 77 aa11.51□□□□□ -0.57
CCDC39-207ENST00000495817 Q6ZNB5 142 aa11.51□□□□□ -0.57
CCDC39-207ENST00000495817 AVPP01185 164 aa11.5□□□□□ -0.57
CCDC39-207ENST00000495817 NR1H3Q13133 447 aa11.5□□□□□ -0.57
CCDC39-207ENST00000495817 ZNF330Q9Y3S2 320 aaPredicted RBP11.5□□□□□ -0.57
CCDC39-207ENST00000495817 FBXO45P0C2W1 286 aa11.49□□□□□ -0.57
CCDC39-207ENST00000495817 NR5A1Q13285 461 aa11.49□□□□□ -0.57
CCDC39-207ENST00000495817 UBTFP17480 764 aaKnown RBP11.48□□□□□ -0.57
CCDC39-207ENST00000495817 ARID5BQ14865 1188 aa11.48□□□□□ -0.57
CCDC39-207ENST00000495817 CTC1Q2NKJ3 1217 aa11.48□□□□□ -0.57
CCDC39-207ENST00000495817 NBPF20Q3BBV1 942 aa11.48□□□□□ -0.57
CCDC39-207ENST00000495817 ZMYND15Q9H091 742 aa11.48□□□□□ -0.57
CCDC39-207ENST00000495817 GDPD2Q9HCC8 539 aa11.48□□□□□ -0.57
CCDC39-207ENST00000495817 RAD21O60216 631 aa11.47□□□□□ -0.57
CCDC39-207ENST00000495817 MCCD1P59942 119 aaPredicted RBP11.47□□□□□ -0.57
CCDC39-207ENST00000495817 VASH1Q7L8A9 365 aaPredicted RBP11.47□□□□□ -0.57
CCDC39-207ENST00000495817 CRIPAKQ8N1N5 446 aa11.47□□□□□ -0.57
CCDC39-207ENST00000495817 COG6Q9Y2V7 657 aa11.47□□□□□ -0.57
CCDC39-207ENST00000495817 WWC1Q8IX03 1113 aa11.46□□□□□ -0.57
CCDC39-207ENST00000495817 SMCPP49901 116 aaPredicted RBP11.45□□□□□ -0.58
CCDC39-207ENST00000495817 WASHC4Q2M389 1173 aa11.45□□□□□ -0.58
CCDC39-207ENST00000495817 DZIP3Q86Y13 1208 aaKnown RBP11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms