RNA–Protein interactions for RNA: ENST00000495755.1

VPS52-221, Transcript of VPS52, GARP complex subunit, human

TSL 5

Gene VPS52, Length 453 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-221	ENST00000495755	CABP2	Q9NPB3	220 aa		10.35	□□□□□ -0.75
VPS52-221	ENST00000495755	TRPM1	Q7Z4N2	1603 aa		10.35	□□□□□ -0.75
VPS52-221	ENST00000495755	ABCA3	Q99758	1704 aa		10.35	□□□□□ -0.75
VPS52-221	ENST00000495755	RALGAPB	Q86X10	1494 aa		10.35	□□□□□ -0.75
VPS52-221	ENST00000495755	TOPAZ1	Q8N9V7	1692 aa		10.34	□□□□□ -0.75
VPS52-221	ENST00000495755	SRPK2	P78362	688 aa	Known RBP	10.34	□□□□□ -0.75
VPS52-221	ENST00000495755	ROCK2	O75116	1388 aa	Known RBP	10.34	□□□□□ -0.75
VPS52-221	ENST00000495755	ONECUT3	O60422	494 aa	Predicted RBP	10.33	□□□□□ -0.76
VPS52-221	ENST00000495755	ATAD2	Q6PL18	1390 aa		10.33	□□□□□ -0.76
VPS52-221	ENST00000495755	GLI3	P10071	1580 aa		10.33	□□□□□ -0.76
VPS52-221	ENST00000495755	NWD2	Q9ULI1	1742 aa		10.33	□□□□□ -0.76
VPS52-221	ENST00000495755	PPIP5K1	Q6PFW1	1433 aa		10.33	□□□□□ -0.76
VPS52-221	ENST00000495755	QRICH2	Q9H0J4	1663 aa		10.32	□□□□□ -0.76
VPS52-221	ENST00000495755	BTG4	Q9NY30	223 aa		10.32	□□□□□ -0.76
VPS52-221	ENST00000495755	CABP1	Q9NZU7	370 aa		10.32	□□□□□ -0.76
VPS52-221	ENST00000495755	EVC2	Q86UK5	1308 aa		10.32	□□□□□ -0.76
VPS52-221	ENST00000495755	PLCH1	Q4KWH8	1693 aa		10.31	□□□□□ -0.76
VPS52-221	ENST00000495755	CRYBG1	Q9Y4K1	1723 aa		10.31	□□□□□ -0.76
VPS52-221	ENST00000495755	BRD4	O60885	1362 aa	Predicted RBP	10.3	□□□□□ -0.76
VPS52-221	ENST00000495755	COL14A1	Q05707	1796 aa	Known RBP	10.3	□□□□□ -0.76
VPS52-221	ENST00000495755	NUTM2G	Q5VZR2	741 aa		10.3	□□□□□ -0.76
VPS52-221	ENST00000495755	SEPT12	Q8IYM1	358 aa		10.3	□□□□□ -0.76
VPS52-221	ENST00000495755	ABTB2	Q8N961	1025 aa		10.3	□□□□□ -0.76
VPS52-221	ENST00000495755	KIAA0232	Q92628	1395 aa		10.29	□□□□□ -0.76
VPS52-221	ENST00000495755	TONSL	Q96HA7	1378 aa		10.29	□□□□□ -0.76
VPS52-221	ENST00000495755	CARD11	Q9BXL7	1154 aa		10.29	□□□□□ -0.76
VPS52-221	ENST00000495755	PRDM11	Q9NQV5	511 aa		10.29	□□□□□ -0.76
VPS52-221	ENST00000495755	CCDC9	Q9Y3X0	531 aa	Known RBP	10.29	□□□□□ -0.76
VPS52-221	ENST00000495755	USP19	O94966	1318 aa		10.29	□□□□□ -0.76
VPS52-221	ENST00000495755	SRCAP	Q6ZRS2	3230 aa		10.28	□□□□□ -0.76
VPS52-221	ENST00000495755	NRAP	Q86VF7	1730 aa		10.28	□□□□□ -0.76
VPS52-221	ENST00000495755	SSH2	Q76I76	1423 aa		10.28	□□□□□ -0.76
VPS52-221	ENST00000495755	ZC3H6	P61129	1189 aa	Known RBP	10.28	□□□□□ -0.76
VPS52-221	ENST00000495755	NLRP13	Q86W25	1043 aa		10.28	□□□□□ -0.76
VPS52-221	ENST00000495755	CCDC125	Q86Z20	511 aa		10.28	□□□□□ -0.76
VPS52-221	ENST00000495755	SPATA31A5	Q5VU36	1347 aa		10.28	□□□□□ -0.76
VPS52-221	ENST00000495755	SPATA31A7	Q8IWB4	1347 aa		10.28	□□□□□ -0.76
VPS52-221	ENST00000495755	SBNO2	Q9Y2G9	1366 aa		10.27	□□□□□ -0.76
VPS52-221	ENST00000495755	USP6	P35125	1406 aa		10.27	□□□□□ -0.77
VPS52-221	ENST00000495755	PHRF1	Q9P1Y6	1649 aa	Known RBP	10.27	□□□□□ -0.77
VPS52-221	ENST00000495755	CHRNA2	Q15822	529 aa		10.27	□□□□□ -0.77
VPS52-221	ENST00000495755	ZNF692	Q9BU19	519 aa	Predicted RBP	10.27	□□□□□ -0.77
VPS52-221	ENST00000495755	CPD	O75976	1380 aa		10.26	□□□□□ -0.77
VPS52-221	ENST00000495755	GC	P02774	474 aa		10.26	□□□□□ -0.77
VPS52-221	ENST00000495755	FAM98C	Q17RN3	349 aa	Known RBP	10.26	□□□□□ -0.77
VPS52-221	ENST00000495755	KRT27	Q7Z3Y8	459 aa		10.26	□□□□□ -0.77
VPS52-221	ENST00000495755	NLRP6	P59044	892 aa		10.25	□□□□□ -0.77
VPS52-221	ENST00000495755	BRWD3	Q6RI45	1802 aa		10.25	□□□□□ -0.77
VPS52-221	ENST00000495755	NRK	Q7Z2Y5	1582 aa		10.25	□□□□□ -0.77
VPS52-221	ENST00000495755	SPATA31A1	Q5TZJ5	1347 aa		10.25	□□□□□ -0.77
VPS52-221	ENST00000495755	CPSF1	Q10570	1443 aa	Known RBP	10.24	□□□□□ -0.77
VPS52-221	ENST00000495755	STRN4	Q9NRL3	753 aa		10.24	□□□□□ -0.77
VPS52-221	ENST00000495755	TTC21B	Q7Z4L5	1316 aa		10.24	□□□□□ -0.77
VPS52-221	ENST00000495755	CAMTA1	Q9Y6Y1	1673 aa		10.24	□□□□□ -0.77
VPS52-221	ENST00000495755	PUS7	Q96PZ0	661 aa	Known RBP	10.23	□□□□□ -0.77
VPS52-221	ENST00000495755	BLM	P54132	1417 aa	Predicted RBP	10.23	□□□□□ -0.77
VPS52-221	ENST00000495755		A0A0G2JS52	829 aa		10.22	□□□□□ -0.77
VPS52-221	ENST00000495755	EVA1C	P58658	441 aa		10.22	□□□□□ -0.77
VPS52-221	ENST00000495755	MYT1	Q01538	1121 aa		10.22	□□□□□ -0.77
VPS52-221	ENST00000495755	LARP1	Q6PKG0	1096 aa	Known RBP	10.22	□□□□□ -0.77
VPS52-221	ENST00000495755	TESK2	Q96S53	571 aa		10.22	□□□□□ -0.77
VPS52-221	ENST00000495755	TTC21A	Q8NDW8	1320 aa		10.22	□□□□□ -0.77
VPS52-221	ENST00000495755	AATK	Q6ZMQ8	1374 aa		10.22	□□□□□ -0.77
VPS52-221	ENST00000495755	KTN1	Q86UP2	1357 aa	Known RBP	10.22	□□□□□ -0.77
VPS52-221	ENST00000495755	SLIT3	O75094	1523 aa		10.22	□□□□□ -0.77
VPS52-221	ENST00000495755	PIK3C2A	O00443	1686 aa		10.22	□□□□□ -0.77
VPS52-221	ENST00000495755	LMO7	Q8WWI1	1683 aa		10.22	□□□□□ -0.77
VPS52-221	ENST00000495755	ST20-MTHFS	A0A0A6YYL1	179 aa		10.21	□□□□□ -0.77
VPS52-221	ENST00000495755	BARGIN	Q6ZT62	677 aa		10.21	□□□□□ -0.77
VPS52-221	ENST00000495755	CD163L1	Q9NR16	1453 aa		10.21	□□□□□ -0.78
VPS52-221	ENST00000495755	THSD7A	Q9UPZ6	1657 aa		10.21	□□□□□ -0.78
VPS52-221	ENST00000495755	AKAP12	Q02952	1782 aa		10.21	□□□□□ -0.78
VPS52-221	ENST00000495755	ARHGEF25	Q86VW2	580 aa		10.2	□□□□□ -0.78
VPS52-221	ENST00000495755	KCNH5	Q8NCM2	988 aa		10.2	□□□□□ -0.78
VPS52-221	ENST00000495755	SLC12A5	Q9H2X9	1139 aa		10.2	□□□□□ -0.78
VPS52-221	ENST00000495755	COL5A2	P05997	1499 aa	Predicted RBP	10.19	□□□□□ -0.78
VPS52-221	ENST00000495755	USP31	Q70CQ4	1352 aa		10.19	□□□□□ -0.78
VPS52-221	ENST00000495755	SLC24A1	O60721	1099 aa		10.19	□□□□□ -0.78
VPS52-221	ENST00000495755	FAM182B	Q5T319	152 aa		10.19	□□□□□ -0.78
VPS52-221	ENST00000495755	DEFB132	Q7Z7B7	95 aa		10.19	□□□□□ -0.78
VPS52-221	ENST00000495755	TCP11L2	Q8N4U5	519 aa		10.19	□□□□□ -0.78
VPS52-221	ENST00000495755	TMC1	Q8TDI8	760 aa		10.19	□□□□□ -0.78
VPS52-221	ENST00000495755	USP35	Q9P2H5	1018 aa		10.19	□□□□□ -0.78
VPS52-221	ENST00000495755	TIMELESS	Q9UNS1	1208 aa		10.19	□□□□□ -0.78
VPS52-221	ENST00000495755	AXIN2	Q9Y2T1	843 aa		10.19	□□□□□ -0.78
VPS52-221	ENST00000495755	THRAP3	Q9Y2W1	955 aa	Known RBP	10.19	□□□□□ -0.78
VPS52-221	ENST00000495755	CLSPN	Q9HAW4	1339 aa		10.18	□□□□□ -0.78
VPS52-221	ENST00000495755	SF3B2	Q13435	895 aa	Known RBP	10.18	□□□□□ -0.78
VPS52-221	ENST00000495755	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	10.18	□□□□□ -0.78
VPS52-221	ENST00000495755	ZRANB1	Q9UGI0	708 aa		10.18	□□□□□ -0.78
VPS52-221	ENST00000495755	MON2	Q7Z3U7	1717 aa		10.18	□□□□□ -0.78
VPS52-221	ENST00000495755	COL18A1	P39060	1754 aa		10.17	□□□□□ -0.78
VPS52-221	ENST00000495755	ZBTB7C	A1YPR0	619 aa		10.17	□□□□□ -0.78
VPS52-221	ENST00000495755	NME9	Q86XW9	330 aa		10.17	□□□□□ -0.78
VPS52-221	ENST00000495755	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	10.17	□□□□□ -0.78
VPS52-221	ENST00000495755	PCGF6	Q9BYE7	350 aa		10.17	□□□□□ -0.78
VPS52-221	ENST00000495755	TERF2IP	Q9NYB0	399 aa		10.17	□□□□□ -0.78
VPS52-221	ENST00000495755	CRB1	P82279	1406 aa		10.16	□□□□□ -0.78
VPS52-221	ENST00000495755	SOX12	O15370	315 aa		10.16	□□□□□ -0.78
VPS52-221	ENST00000495755	FAM196A	Q6ZSG2	479 aa		10.16	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms