RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 TOPAZ1Q8N9V7 1692 aa32.16■■■□□ 2.74
HDDC3-203ENST00000494993 ONECUT3O60422 494 aaPredicted RBP32.16■■■□□ 2.74
HDDC3-203ENST00000494993 NUDT16Q96DE0 195 aaKnown RBP32.14■■■□□ 2.74
HDDC3-203ENST00000494993 PAK3O75914 559 aaPredicted RBP32.12■■■□□ 2.73
HDDC3-203ENST00000494993 BTG4Q9NY30 223 aa32.12■■■□□ 2.73
HDDC3-203ENST00000494993 ZRANB1Q9UGI0 708 aa32.12■■■□□ 2.73
HDDC3-203ENST00000494993 PHRF1Q9P1Y6 1649 aaKnown RBP32.11■■■□□ 2.73
HDDC3-203ENST00000494993 CDK19Q9BWU1 502 aa32.09■■■□□ 2.73
HDDC3-203ENST00000494993 KRT27Q7Z3Y8 459 aa32.08■■■□□ 2.73
HDDC3-203ENST00000494993 SRCAPQ6ZRS2 3230 aa32.04■■■□□ 2.72
HDDC3-203ENST00000494993 POLR3AO14802 1390 aaPredicted RBP32.04■■■□□ 2.72
HDDC3-203ENST00000494993 A0A0G2JS52 829 aa32.03■■■□□ 2.72
HDDC3-203ENST00000494993 MYT1Q01538 1121 aa32.03■■■□□ 2.72
HDDC3-203ENST00000494993 SF3B2Q13435 895 aaKnown RBP32.03■■■□□ 2.72
HDDC3-203ENST00000494993 FAM98CQ17RN3 349 aaKnown RBP32.03■■■□□ 2.72
HDDC3-203ENST00000494993 NBPF1Q3BBV0 1214 aa32.03■■■□□ 2.72
HDDC3-203ENST00000494993 DEFB132Q7Z7B7 95 aa32.02■■■□□ 2.72
HDDC3-203ENST00000494993 PRDM11Q9NQV5 511 aa32.02■■■□□ 2.72
HDDC3-203ENST00000494993 CCDC61Q9Y6R9 512 aa32.01■■■□□ 2.71
HDDC3-203ENST00000494993 THSD7AQ9UPZ6 1657 aa32■■■□□ 2.71
HDDC3-203ENST00000494993 ACEP12821 1306 aa32■■■□□ 2.71
HDDC3-203ENST00000494993 SPATA31A5Q5VU36 1347 aa32■■■□□ 2.71
HDDC3-203ENST00000494993 SPATA31A7Q8IWB4 1347 aa32■■■□□ 2.71
HDDC3-203ENST00000494993 QRICH2Q9H0J4 1663 aa31.99■■■□□ 2.71
HDDC3-203ENST00000494993 KIAA0232Q92628 1395 aa31.98■■■□□ 2.71
HDDC3-203ENST00000494993 PLEKHG3A1L390 1219 aa31.97■■■□□ 2.71
HDDC3-203ENST00000494993 NBPF8Q3BBV2 869 aa31.97■■■□□ 2.71
HDDC3-203ENST00000494993 RGPD1P0DJD0 1748 aa31.96■■■□□ 2.71
HDDC3-203ENST00000494993 NRKQ7Z2Y5 1582 aa31.94■■■□□ 2.7
HDDC3-203ENST00000494993 NUTM2GQ5VZR2 741 aa31.94■■■□□ 2.7
HDDC3-203ENST00000494993 CENPJQ9HC77 1338 aaPredicted RBP31.94■■■□□ 2.7
HDDC3-203ENST00000494993 CHRNA2Q15822 529 aa31.92■■■□□ 2.7
HDDC3-203ENST00000494993 ZC3H6P61129 1189 aaKnown RBP31.91■■■□□ 2.7
HDDC3-203ENST00000494993 PPIP5K1Q6PFW1 1433 aa31.9■■■□□ 2.7
HDDC3-203ENST00000494993 SRPK2P78362 688 aaKnown RBP31.89■■■□□ 2.7
HDDC3-203ENST00000494993 SPATA31A1Q5TZJ5 1347 aa31.89■■■□□ 2.7
HDDC3-203ENST00000494993 TRPM1Q7Z4N2 1603 aa31.88■■■□□ 2.69
HDDC3-203ENST00000494993 TNS1Q9HBL0 1735 aaKnown RBP31.87■■■□□ 2.69
HDDC3-203ENST00000494993 BAG6P46379 1132 aa31.87■■■□□ 2.69
HDDC3-203ENST00000494993 ABTB2Q8N961 1025 aa31.87■■■□□ 2.69
HDDC3-203ENST00000494993 STRN4Q9NRL3 753 aa31.87■■■□□ 2.69
HDDC3-203ENST00000494993 LMO7Q8WWI1 1683 aa31.86■■■□□ 2.69
HDDC3-203ENST00000494993 L3MBTL2Q969R5 705 aa31.85■■■□□ 2.69
HDDC3-203ENST00000494993 CABP2Q9NPB3 220 aa31.85■■■□□ 2.69
HDDC3-203ENST00000494993 USP19O94966 1318 aa31.84■■■□□ 2.69
HDDC3-203ENST00000494993 FAM182BQ5T319 152 aa31.84■■■□□ 2.69
HDDC3-203ENST00000494993 SSH2Q76I76 1423 aa31.83■■■□□ 2.69
HDDC3-203ENST00000494993 CAMTA1Q9Y6Y1 1673 aa31.83■■■□□ 2.69
HDDC3-203ENST00000494993 CPDO75976 1380 aa31.82■■■□□ 2.69
HDDC3-203ENST00000494993 BRD4O60885 1362 aaPredicted RBP31.81■■■□□ 2.68
HDDC3-203ENST00000494993 NLRP13Q86W25 1043 aa31.79■■■□□ 2.68
HDDC3-203ENST00000494993 EVA1CP58658 441 aa31.78■■■□□ 2.68
HDDC3-203ENST00000494993 SIN3AQ96ST3 1273 aa31.77■■■□□ 2.68
HDDC3-203ENST00000494993 LRP5O75197 1615 aa31.77■■■□□ 2.68
HDDC3-203ENST00000494993 DISP2A7MBM2 1401 aa31.76■■■□□ 2.68
HDDC3-203ENST00000494993 USP6P35125 1406 aa31.76■■■□□ 2.68
HDDC3-203ENST00000494993 USP35Q9P2H5 1018 aa31.76■■■□□ 2.67
HDDC3-203ENST00000494993 GCP02774 474 aa31.75■■■□□ 2.67
HDDC3-203ENST00000494993 EN1Q05925 392 aaPredicted RBP31.75■■■□□ 2.67
HDDC3-203ENST00000494993 CABP1Q9NZU7 370 aa31.75■■■□□ 2.67
HDDC3-203ENST00000494993 BARGINQ6ZT62 677 aa31.74■■■□□ 2.67
HDDC3-203ENST00000494993 LARP1Q6PKG0 1096 aaKnown RBP31.73■■■□□ 2.67
HDDC3-203ENST00000494993 PIK3C2AO00443 1686 aa31.73■■■□□ 2.67
HDDC3-203ENST00000494993 EVC2Q86UK5 1308 aa31.73■■■□□ 2.67
HDDC3-203ENST00000494993 AKAP12Q02952 1782 aa31.72■■■□□ 2.67
HDDC3-203ENST00000494993 SLIT3O75094 1523 aa31.72■■■□□ 2.67
HDDC3-203ENST00000494993 FAM196AQ6ZSG2 479 aa31.71■■■□□ 2.67
HDDC3-203ENST00000494993 COL5A2P05997 1499 aaPredicted RBP31.71■■■□□ 2.67
HDDC3-203ENST00000494993 ROCK2O75116 1388 aaKnown RBP31.7■■■□□ 2.67
HDDC3-203ENST00000494993 PARP4Q9UKK3 1724 aaKnown RBP31.7■■■□□ 2.67
HDDC3-203ENST00000494993 PSDA5PKW4 1024 aaPredicted RBP31.69■■■□□ 2.66
HDDC3-203ENST00000494993 NEUROD1Q13562 356 aa31.69■■■□□ 2.66
HDDC3-203ENST00000494993 TCP11L2Q8N4U5 519 aa31.69■■■□□ 2.66
HDDC3-203ENST00000494993 NLRP6P59044 892 aa31.67■■■□□ 2.66
HDDC3-203ENST00000494993 COL18A1P39060 1754 aa31.66■■■□□ 2.66
HDDC3-203ENST00000494993 TRIM37O94972 964 aa31.66■■■□□ 2.66
HDDC3-203ENST00000494993 PDE3BQ13370 1112 aa31.65■■■□□ 2.66
HDDC3-203ENST00000494993 THRAP3Q9Y2W1 955 aaKnown RBP31.65■■■□□ 2.66
HDDC3-203ENST00000494993 EZH2Q15910 746 aaKnown RBP31.63■■■□□ 2.65
HDDC3-203ENST00000494993 CRB1P82279 1406 aa31.62■■■□□ 2.65
HDDC3-203ENST00000494993 AATKQ6ZMQ8 1374 aa31.62■■■□□ 2.65
HDDC3-203ENST00000494993 RREB1Q92766 1687 aa31.62■■■□□ 2.65
HDDC3-203ENST00000494993 ZBTB7CA1YPR0 619 aa31.61■■■□□ 2.65
HDDC3-203ENST00000494993 WNK3Q9BYP7 1800 aa31.61■■■□□ 2.65
HDDC3-203ENST00000494993 RGPD5Q99666 1765 aa31.61■■■□□ 2.65
HDDC3-203ENST00000494993 CAMKK2Q96RR4 588 aa31.6■■■□□ 2.65
HDDC3-203ENST00000494993 PARD3Q8TEW0 1356 aa31.58■■■□□ 2.65
HDDC3-203ENST00000494993 APBA3O96018 575 aa31.58■■■□□ 2.65
HDDC3-203ENST00000494993 ZNF692Q9BU19 519 aaPredicted RBP31.58■■■□□ 2.65
HDDC3-203ENST00000494993 MON2Q7Z3U7 1717 aa31.58■■■□□ 2.65
HDDC3-203ENST00000494993 R3HDM1Q15032 1099 aaKnown RBP31.57■■■□□ 2.64
HDDC3-203ENST00000494993 NUP188Q5SRE5 1749 aa31.57■■■□□ 2.64
HDDC3-203ENST00000494993 LRRC37A3O60309 1634 aa31.57■■■□□ 2.64
HDDC3-203ENST00000494993 TTC21BQ7Z4L5 1316 aa31.56■■■□□ 2.64
HDDC3-203ENST00000494993 SBF2Q86WG5 1849 aa31.56■■■□□ 2.64
HDDC3-203ENST00000494993 PEAK1Q9H792 1746 aa31.55■■■□□ 2.64
HDDC3-203ENST00000494993 CPSF1Q10570 1443 aaKnown RBP31.54■■■□□ 2.64
HDDC3-203ENST00000494993 TTC21AQ8NDW8 1320 aa31.53■■■□□ 2.64
HDDC3-203ENST00000494993 SBNO2Q9Y2G9 1366 aa31.52■■■□□ 2.64
HDDC3-203ENST00000494993 TOM1L2Q6ZVM7 507 aa31.5■■■□□ 2.63
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms