RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-208ENST00000494728 SIN3AQ96ST3 1273 aa16.92■□□□□ 0.3
VTI1A-208ENST00000494728 HAP1P54257 671 aaPredicted RBP16.91■□□□□ 0.3
VTI1A-208ENST00000494728 CDK19Q9BWU1 502 aa16.91■□□□□ 0.3
VTI1A-208ENST00000494728 POLR3AO14802 1390 aaPredicted RBP16.9■□□□□ 0.3
VTI1A-208ENST00000494728 L3MBTL2Q969R5 705 aa16.9■□□□□ 0.3
VTI1A-208ENST00000494728 FAM83GA6ND36 823 aa16.89■□□□□ 0.29
VTI1A-208ENST00000494728 NGDNQ8NEJ9 315 aaKnown RBP16.89■□□□□ 0.29
VTI1A-208ENST00000494728 THSD7AQ9UPZ6 1657 aa16.88■□□□□ 0.29
VTI1A-208ENST00000494728 VPS72Q15906 364 aa16.87■□□□□ 0.29
VTI1A-208ENST00000494728 LMO7Q8WWI1 1683 aa16.86■□□□□ 0.29
VTI1A-208ENST00000494728 PAK3O75914 559 aaPredicted RBP16.86■□□□□ 0.29
VTI1A-208ENST00000494728 ACEP12821 1306 aa16.86■□□□□ 0.29
VTI1A-208ENST00000494728 CENPJQ9HC77 1338 aaPredicted RBP16.86■□□□□ 0.29
VTI1A-208ENST00000494728 AKAP12Q02952 1782 aa16.86■□□□□ 0.29
VTI1A-208ENST00000494728 PPIP5K1Q6PFW1 1433 aa16.86■□□□□ 0.29
VTI1A-208ENST00000494728 PIK3C2AO00443 1686 aa16.85■□□□□ 0.29
VTI1A-208ENST00000494728 BTG4Q9NY30 223 aa16.84■□□□□ 0.29
VTI1A-208ENST00000494728 NUTM2GQ5VZR2 741 aa16.83■□□□□ 0.28
VTI1A-208ENST00000494728 KIAA0232Q92628 1395 aa16.83■□□□□ 0.28
VTI1A-208ENST00000494728 PLEKHG3A1L390 1219 aa16.82■□□□□ 0.28
VTI1A-208ENST00000494728 NEUROD1Q13562 356 aa16.82■□□□□ 0.28
VTI1A-208ENST00000494728 SEPT12Q8IYM1 358 aa16.82■□□□□ 0.28
VTI1A-208ENST00000494728 CABP2Q9NPB3 220 aa16.82■□□□□ 0.28
VTI1A-208ENST00000494728 CCDC61Q9Y6R9 512 aa16.82■□□□□ 0.28
VTI1A-208ENST00000494728 NBPF8Q3BBV2 869 aa16.81■□□□□ 0.28
VTI1A-208ENST00000494728 CCDC9Q9Y3X0 531 aaKnown RBP16.81■□□□□ 0.28
VTI1A-208ENST00000494728 TNS1Q9HBL0 1735 aaKnown RBP16.81■□□□□ 0.28
VTI1A-208ENST00000494728 ONECUT3O60422 494 aaPredicted RBP16.8■□□□□ 0.28
VTI1A-208ENST00000494728 CAMTA1Q9Y6Y1 1673 aa16.8■□□□□ 0.28
VTI1A-208ENST00000494728 BLMP54132 1417 aaPredicted RBP16.79■□□□□ 0.28
VTI1A-208ENST00000494728 ROCK2O75116 1388 aaKnown RBP16.79■□□□□ 0.28
VTI1A-208ENST00000494728 SRPK2P78362 688 aaKnown RBP16.79■□□□□ 0.28
VTI1A-208ENST00000494728 CHRNA2Q15822 529 aa16.79■□□□□ 0.28
VTI1A-208ENST00000494728 FAM98CQ17RN3 349 aaKnown RBP16.79■□□□□ 0.28
VTI1A-208ENST00000494728 PRDM11Q9NQV5 511 aa16.79■□□□□ 0.28
VTI1A-208ENST00000494728 RGPD1P0DJD0 1748 aa16.79■□□□□ 0.28
VTI1A-208ENST00000494728 MON2Q7Z3U7 1717 aa16.79■□□□□ 0.28
VTI1A-208ENST00000494728 USP6P35125 1406 aa16.79■□□□□ 0.28
VTI1A-208ENST00000494728 USP19O94966 1318 aa16.78■□□□□ 0.28
VTI1A-208ENST00000494728 SPATA31A5Q5VU36 1347 aa16.78■□□□□ 0.28
VTI1A-208ENST00000494728 SPATA31A7Q8IWB4 1347 aa16.78■□□□□ 0.28
VTI1A-208ENST00000494728 POTEDQ86YR6 584 aa16.78■□□□□ 0.28
VTI1A-208ENST00000494728 SLIT3O75094 1523 aa16.78■□□□□ 0.28
VTI1A-208ENST00000494728 MSH5O43196 834 aa16.77■□□□□ 0.28
VTI1A-208ENST00000494728 ZC3H6P61129 1189 aaKnown RBP16.77■□□□□ 0.28
VTI1A-208ENST00000494728 SSH2Q76I76 1423 aa16.77■□□□□ 0.27
VTI1A-208ENST00000494728 WNK3Q9BYP7 1800 aa16.77■□□□□ 0.27
VTI1A-208ENST00000494728 COL18A1P39060 1754 aa16.77■□□□□ 0.27
VTI1A-208ENST00000494728 RGPD5Q99666 1765 aa16.77■□□□□ 0.27
VTI1A-208ENST00000494728 KRT27Q7Z3Y8 459 aa16.75■□□□□ 0.27
VTI1A-208ENST00000494728 DEFB132Q7Z7B7 95 aa16.74■□□□□ 0.27
VTI1A-208ENST00000494728 ABTB2Q8N961 1025 aa16.74■□□□□ 0.27
VTI1A-208ENST00000494728 CABP1Q9NZU7 370 aa16.74■□□□□ 0.27
VTI1A-208ENST00000494728 SPATA31A1Q5TZJ5 1347 aa16.73■□□□□ 0.27
VTI1A-208ENST00000494728 A0A0G2JS52 829 aa16.73■□□□□ 0.27
VTI1A-208ENST00000494728 MYT1Q01538 1121 aa16.73■□□□□ 0.27
VTI1A-208ENST00000494728 FAM182BQ5T319 152 aa16.73■□□□□ 0.27
VTI1A-208ENST00000494728 CPDO75976 1380 aa16.73■□□□□ 0.27
VTI1A-208ENST00000494728 PARP4Q9UKK3 1724 aaKnown RBP16.73■□□□□ 0.27
VTI1A-208ENST00000494728 USP54Q70EL1 1684 aa16.72■□□□□ 0.27
VTI1A-208ENST00000494728 COL5A2P05997 1499 aaPredicted RBP16.72■□□□□ 0.27
VTI1A-208ENST00000494728 CCDC125Q86Z20 511 aa16.71■□□□□ 0.27
VTI1A-208ENST00000494728 STRN4Q9NRL3 753 aa16.71■□□□□ 0.27
VTI1A-208ENST00000494728 EVC2Q86UK5 1308 aa16.7■□□□□ 0.26
VTI1A-208ENST00000494728 CD163L1Q9NR16 1453 aa16.7■□□□□ 0.26
VTI1A-208ENST00000494728 LRRC37A3O60309 1634 aa16.7■□□□□ 0.26
VTI1A-208ENST00000494728 BRD4O60885 1362 aaPredicted RBP16.69■□□□□ 0.26
VTI1A-208ENST00000494728 SBNO2Q9Y2G9 1366 aa16.69■□□□□ 0.26
VTI1A-208ENST00000494728 NFAT5O94916 1531 aa16.69■□□□□ 0.26
VTI1A-208ENST00000494728 CPSF1Q10570 1443 aaKnown RBP16.69■□□□□ 0.26
VTI1A-208ENST00000494728 GCP02774 474 aa16.68■□□□□ 0.26
VTI1A-208ENST00000494728 LARP1Q6PKG0 1096 aaKnown RBP16.68■□□□□ 0.26
VTI1A-208ENST00000494728 TONSLQ96HA7 1378 aa16.67■□□□□ 0.26
VTI1A-208ENST00000494728 LTN1O94822 1766 aa16.67■□□□□ 0.26
VTI1A-208ENST00000494728 PEAK1Q9H792 1746 aa16.67■□□□□ 0.26
VTI1A-208ENST00000494728 RREB1Q92766 1687 aa16.66■□□□□ 0.26
VTI1A-208ENST00000494728 NLRP13Q86W25 1043 aa16.66■□□□□ 0.26
VTI1A-208ENST00000494728 USP35Q9P2H5 1018 aa16.66■□□□□ 0.26
VTI1A-208ENST00000494728 SBF2Q86WG5 1849 aa16.66■□□□□ 0.26
VTI1A-208ENST00000494728 NLRP6P59044 892 aa16.64■□□□□ 0.25
VTI1A-208ENST00000494728 CARD11Q9BXL7 1154 aa16.64■□□□□ 0.25
VTI1A-208ENST00000494728 ZRANB1Q9UGI0 708 aa16.64■□□□□ 0.25
VTI1A-208ENST00000494728 NUP188Q5SRE5 1749 aa16.64■□□□□ 0.25
VTI1A-208ENST00000494728 TTC21BQ7Z4L5 1316 aa16.64■□□□□ 0.25
VTI1A-208ENST00000494728 DISP2A7MBM2 1401 aa16.62■□□□□ 0.25
VTI1A-208ENST00000494728 CRB1P82279 1406 aa16.62■□□□□ 0.25
VTI1A-208ENST00000494728 ZBTB7CA1YPR0 619 aa16.62■□□□□ 0.25
VTI1A-208ENST00000494728 LRP5O75197 1615 aa16.62■□□□□ 0.25
VTI1A-208ENST00000494728 AATKQ6ZMQ8 1374 aa16.62■□□□□ 0.25
VTI1A-208ENST00000494728 KTN1Q86UP2 1357 aaKnown RBP16.62■□□□□ 0.25
VTI1A-208ENST00000494728 SF3B2Q13435 895 aaKnown RBP16.61■□□□□ 0.25
VTI1A-208ENST00000494728 BARGINQ6ZT62 677 aa16.61■□□□□ 0.25
VTI1A-208ENST00000494728 EVA1CP58658 441 aa16.6■□□□□ 0.25
VTI1A-208ENST00000494728 TRIM26Q12899 539 aaPredicted RBP16.6■□□□□ 0.25
VTI1A-208ENST00000494728 SOX12O15370 315 aa16.59■□□□□ 0.25
VTI1A-208ENST00000494728 EN1Q05925 392 aaPredicted RBP16.59■□□□□ 0.25
VTI1A-208ENST00000494728 TCP11L2Q8N4U5 519 aa16.59■□□□□ 0.25
VTI1A-208ENST00000494728 AXIN2Q9Y2T1 843 aa16.59■□□□□ 0.25
VTI1A-208ENST00000494728 BAG6P46379 1132 aa16.58■□□□□ 0.24
VTI1A-208ENST00000494728 TTC21AQ8NDW8 1320 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms