RNA–Protein interactions for RNA: ENST00000494672.1

CCDC66-222, Transcript of coiled-coil domain containing 66, human

TSL 4

Gene CCDC66, Length 577 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCDC66-222	ENST00000494672	DDRGK1	Q96HY6	314 aa		10.54	□□□□□ -0.72
CCDC66-222	ENST00000494672		J3QL48	77 aa		10.53	□□□□□ -0.72
CCDC66-222	ENST00000494672	LINC01559	Q495D7	138 aa		10.52	□□□□□ -0.73
CCDC66-222	ENST00000494672	ALDH1A1	P00352	501 aa		10.51	□□□□□ -0.73
CCDC66-222	ENST00000494672	SMCP	P49901	116 aa	Predicted RBP	10.51	□□□□□ -0.73
CCDC66-222	ENST00000494672	SKIV2L	Q15477	1246 aa	Known RBP	10.51	□□□□□ -0.73
CCDC66-222	ENST00000494672	RTL5	Q5HYW3	569 aa	Predicted RBP	10.51	□□□□□ -0.73
CCDC66-222	ENST00000494672	HELB	Q8NG08	1087 aa	Predicted RBP	10.51	□□□□□ -0.73
CCDC66-222	ENST00000494672	FAM117A	Q9C073	453 aa		10.51	□□□□□ -0.73
CCDC66-222	ENST00000494672	ATP1B4	Q9UN42	357 aa	Predicted RBP	10.51	□□□□□ -0.73
CCDC66-222	ENST00000494672	ZNF511	Q8NB15	262 aa		10.5	□□□□□ -0.73
CCDC66-222	ENST00000494672	PER1	O15534	1290 aa	Predicted RBP	10.49	□□□□□ -0.73
CCDC66-222	ENST00000494672	SIAH2	O43255	324 aa		10.49	□□□□□ -0.73
CCDC66-222	ENST00000494672	F12	P00748	615 aa	Predicted RBP	10.49	□□□□□ -0.73
CCDC66-222	ENST00000494672	MAP10	Q9P2G4	905 aa		10.49	□□□□□ -0.73
CCDC66-222	ENST00000494672	VARS	P26640	1264 aa	Known RBP	10.48	□□□□□ -0.73
CCDC66-222	ENST00000494672	SH3D19	Q5HYK7	790 aa		10.47	□□□□□ -0.73
CCDC66-222	ENST00000494672	HPS1	Q92902	700 aa		10.47	□□□□□ -0.73
CCDC66-222	ENST00000494672	WASF2	Q9Y6W5	498 aa		10.47	□□□□□ -0.73
CCDC66-222	ENST00000494672	POTEC	B2RU33	542 aa		10.46	□□□□□ -0.73
CCDC66-222	ENST00000494672	DACH1	Q9UI36	760 aa		10.46	□□□□□ -0.73
CCDC66-222	ENST00000494672	PLEKHG3	A1L390	1219 aa		10.45	□□□□□ -0.74
CCDC66-222	ENST00000494672	ARMC2	Q8NEN0	867 aa		10.45	□□□□□ -0.74
CCDC66-222	ENST00000494672	MPND	Q8N594	471 aa		10.43	□□□□□ -0.74
CCDC66-222	ENST00000494672	PROCA1	Q8NCQ7	364 aa	Predicted RBP	10.43	□□□□□ -0.74
CCDC66-222	ENST00000494672	FAM174A	Q8TBP5	190 aa		10.43	□□□□□ -0.74
CCDC66-222	ENST00000494672	AGER	Q15109	404 aa		10.42	□□□□□ -0.74
CCDC66-222	ENST00000494672	FOXJ1	Q92949	421 aa		10.42	□□□□□ -0.74
CCDC66-222	ENST00000494672	CTDSPL2	Q05D32	466 aa		10.41	□□□□□ -0.74
CCDC66-222	ENST00000494672	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	10.41	□□□□□ -0.74
CCDC66-222	ENST00000494672	C11orf95	C9JLR9	678 aa	Predicted RBP	10.4	□□□□□ -0.74
CCDC66-222	ENST00000494672	NEUROD2	Q15784	382 aa		10.4	□□□□□ -0.74
CCDC66-222	ENST00000494672	PPP2R2D	Q66LE6	453 aa		10.4	□□□□□ -0.74
CCDC66-222	ENST00000494672	BPHL	Q86WA6	291 aa	Predicted RBP	10.4	□□□□□ -0.74
CCDC66-222	ENST00000494672	ZNF775	Q96BV0	537 aa	Predicted RBP	10.4	□□□□□ -0.74
CCDC66-222	ENST00000494672	GMPR2	Q9P2T1	348 aa	Known RBP	10.4	□□□□□ -0.74
CCDC66-222	ENST00000494672	NBPF14	Q5TI25	921 aa		10.39	□□□□□ -0.75
CCDC66-222	ENST00000494672	ATP13A2	Q9NQ11	1180 aa		10.39	□□□□□ -0.75
CCDC66-222	ENST00000494672	TLL2	Q9Y6L7	1015 aa		10.38	□□□□□ -0.75
CCDC66-222	ENST00000494672	SENP2	Q9HC62	589 aa		10.37	□□□□□ -0.75
CCDC66-222	ENST00000494672	CAPN5	O15484	640 aa	Predicted RBP	10.36	□□□□□ -0.75
CCDC66-222	ENST00000494672	ARID5B	Q14865	1188 aa		10.36	□□□□□ -0.75
CCDC66-222	ENST00000494672	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	10.36	□□□□□ -0.75	2e-9	■■■■□ 21
CCDC66-222	ENST00000494672	CDK15	Q96Q40	435 aa		10.36	□□□□□ -0.75
CCDC66-222	ENST00000494672	GOPC	Q9HD26	462 aa		10.36	□□□□□ -0.75
CCDC66-222	ENST00000494672	AP1G2	O75843	785 aa		10.35	□□□□□ -0.75
CCDC66-222	ENST00000494672	LRRN4	Q8WUT4	740 aa		10.35	□□□□□ -0.75
CCDC66-222	ENST00000494672	NNT	Q13423	1086 aa		10.34	□□□□□ -0.75
CCDC66-222	ENST00000494672	FBXO31	Q5XUX0	539 aa	Predicted RBP	10.34	□□□□□ -0.75
CCDC66-222	ENST00000494672	PCMTD1	Q96MG8	357 aa	Predicted RBP	10.34	□□□□□ -0.75
CCDC66-222	ENST00000494672	ADH1C	P00326	375 aa		10.33	□□□□□ -0.76
CCDC66-222	ENST00000494672	C4orf48	Q5BLP8	95 aa		10.33	□□□□□ -0.76
CCDC66-222	ENST00000494672	IL27	Q8NEV9	243 aa		10.33	□□□□□ -0.76
CCDC66-222	ENST00000494672	KIFC2	Q96AC6	838 aa		10.33	□□□□□ -0.76
CCDC66-222	ENST00000494672	TPRN	Q4KMQ1	711 aa		10.32	□□□□□ -0.76
CCDC66-222	ENST00000494672	SH3RF1	Q7Z6J0	888 aa		10.32	□□□□□ -0.76
CCDC66-222	ENST00000494672	NR5A1	Q13285	461 aa		10.31	□□□□□ -0.76
CCDC66-222	ENST00000494672	SH3BP5L	Q7L8J4	393 aa		10.31	□□□□□ -0.76
CCDC66-222	ENST00000494672	TRIM47	Q96LD4	638 aa		10.31	□□□□□ -0.76
CCDC66-222	ENST00000494672	FKBPL	Q9UIM3	349 aa		10.31	□□□□□ -0.76
CCDC66-222	ENST00000494672	MAGEB6P1	A0A0J9YX57	407 aa		10.3	□□□□□ -0.76
CCDC66-222	ENST00000494672	BRPF1	P55201	1214 aa	Predicted RBP	10.3	□□□□□ -0.76
CCDC66-222	ENST00000494672	NR6A1	Q15406	480 aa		10.3	□□□□□ -0.76
CCDC66-222	ENST00000494672	PDXDC2P	Q6P474	469 aa		10.3	□□□□□ -0.76
CCDC66-222	ENST00000494672	C1QTNF2	Q9BXJ5	285 aa		10.3	□□□□□ -0.76
CCDC66-222	ENST00000494672	RFC5	P40937	340 aa		10.29	□□□□□ -0.76
CCDC66-222	ENST00000494672	PNMA1	Q8ND90	353 aa		10.29	□□□□□ -0.76
CCDC66-222	ENST00000494672	ZC3H4	Q9UPT8	1303 aa	Known RBP	10.29	□□□□□ -0.76
CCDC66-222	ENST00000494672	SNRPB	P14678	240 aa	Known RBP	10.28	□□□□□ -0.76
CCDC66-222	ENST00000494672	GRM5	P41594	1212 aa		10.28	□□□□□ -0.76
CCDC66-222	ENST00000494672	WDR4	P57081	412 aa	Known RBP	10.28	□□□□□ -0.76
CCDC66-222	ENST00000494672	CARD14	Q9BXL6	1004 aa		10.28	□□□□□ -0.76
CCDC66-222	ENST00000494672	TMEM259	Q4ZIN3	620 aa		10.27	□□□□□ -0.77
CCDC66-222	ENST00000494672	VASH1	Q7L8A9	365 aa	Predicted RBP	10.27	□□□□□ -0.77
CCDC66-222	ENST00000494672	TRMT44	Q8IYL2	757 aa	Known RBP	10.27	□□□□□ -0.77
CCDC66-222	ENST00000494672	ARHGAP9	Q9BRR9	750 aa		10.27	□□□□□ -0.77
CCDC66-222	ENST00000494672	MAP4K5	Q9Y4K4	846 aa		10.27	□□□□□ -0.77
CCDC66-222	ENST00000494672	USP17L8	P0C7I0	530 aa		10.26	□□□□□ -0.77
CCDC66-222	ENST00000494672	BMP1	P13497	986 aa		10.26	□□□□□ -0.77
CCDC66-222	ENST00000494672	TIMP2	P16035	220 aa		10.26	□□□□□ -0.77
CCDC66-222	ENST00000494672	TRIM46	Q7Z4K8	759 aa		10.26	□□□□□ -0.77
CCDC66-222	ENST00000494672	ZBTB33	Q86T24	672 aa		10.25	□□□□□ -0.77
CCDC66-222	ENST00000494672	KLF16	Q9BXK1	252 aa	Predicted RBP	10.25	□□□□□ -0.77
CCDC66-222	ENST00000494672	ZIC2	O95409	532 aa	Predicted RBP	10.24	□□□□□ -0.77
CCDC66-222	ENST00000494672	PTK2	Q05397	1052 aa		10.24	□□□□□ -0.77
CCDC66-222	ENST00000494672	SCARF1	Q14162	830 aa		10.24	□□□□□ -0.77
CCDC66-222	ENST00000494672	ERFE	Q4G0M1	354 aa		10.24	□□□□□ -0.77
CCDC66-222	ENST00000494672	TREML4	Q6UXN2	200 aa		10.24	□□□□□ -0.77
CCDC66-222	ENST00000494672	NR3C2	P08235	984 aa		10.23	□□□□□ -0.77
CCDC66-222	ENST00000494672	CDV3	Q9UKY7	258 aa	Known RBP	10.23	□□□□□ -0.77
CCDC66-222	ENST00000494672	GPSM3	Q9Y4H4	160 aa		10.23	□□□□□ -0.77
CCDC66-222	ENST00000494672	MRPL14	Q6P1L8	145 aa	Known RBP	10.22	□□□□□ -0.77
CCDC66-222	ENST00000494672	FSHR	P23945	695 aa		10.21	□□□□□ -0.77
CCDC66-222	ENST00000494672	EPS8L1	Q8TE68	723 aa		10.21	□□□□□ -0.77
CCDC66-222	ENST00000494672	ITPKC	Q96DU7	683 aa		10.21	□□□□□ -0.77
CCDC66-222	ENST00000494672	SLC10A4	Q96EP9	437 aa		10.21	□□□□□ -0.77
CCDC66-222	ENST00000494672	ZFP42	Q96MM3	310 aa		10.21	□□□□□ -0.77
CCDC66-222	ENST00000494672	ZFAND3	Q9H8U3	227 aa		10.21	□□□□□ -0.77
CCDC66-222	ENST00000494672	HMX1	Q9NP08	348 aa	Predicted RBP	10.21	□□□□□ -0.77
CCDC66-222	ENST00000494672	EMILIN1	Q9Y6C2	1016 aa		10.2	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms