RNA–Protein interactions for RNA: ENST00000494582.1

LINC00488-201, long intergenic non-protein coding RNA 488, humanhuman

TSL 1 (best) BASIC

Gene LINC00488, Length 2,520 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00488-201ENST00000494582 CCDC39Q9UFE4 941 aa12.55□□□□□ -0.4
LINC00488-201ENST00000494582 TARBP1Q13395 1621 aaKnown RBP12.54□□□□□ -0.4
LINC00488-201ENST00000494582 SYCE3A1L190 88 aa12.54□□□□□ -0.4
LINC00488-201ENST00000494582 PRPF40AO75400 957 aaKnown RBP12.54□□□□□ -0.4
LINC00488-201ENST00000494582 ITPRIPQ8IWB1 547 aa12.54□□□□□ -0.4
LINC00488-201ENST00000494582 GTPBP4Q9BZE4 634 aaKnown RBP12.54□□□□□ -0.4
LINC00488-201ENST00000494582 TBC1D9Q6ZT07 1266 aa12.54□□□□□ -0.4
LINC00488-201ENST00000494582 C17orf53Q8N3J3 647 aaPredicted RBP12.54□□□□□ -0.4
LINC00488-201ENST00000494582 TSR2Q969E8 191 aaKnown RBP12.54□□□□□ -0.4
LINC00488-201ENST00000494582 CHMP4BQ9H444 224 aaKnown RBP12.54□□□□□ -0.4
LINC00488-201ENST00000494582 SPDYE4A6NLX3 237 aa12.53□□□□□ -0.4
LINC00488-201ENST00000494582 RUNDC1Q96C34 613 aa12.53□□□□□ -0.4
LINC00488-201ENST00000494582 POLR3AO14802 1390 aaPredicted RBP12.53□□□□□ -0.4
LINC00488-201ENST00000494582 ZBTB22O15209 634 aa12.53□□□□□ -0.4
LINC00488-201ENST00000494582 KIF20AO95235 890 aa12.53□□□□□ -0.4
LINC00488-201ENST00000494582 WDR63Q8IWG1 891 aa12.53□□□□□ -0.4
LINC00488-201ENST00000494582 NAP1L2Q9ULW6 460 aaPredicted RBP12.53□□□□□ -0.4
LINC00488-201ENST00000494582 ZDHHC9Q9Y397 364 aa12.53□□□□□ -0.4
LINC00488-201ENST00000494582 TNNT2P45379 298 aaPredicted RBP12.52□□□□□ -0.4
LINC00488-201ENST00000494582 ZNF830Q96NB3 372 aaPredicted RBP12.52□□□□□ -0.4
LINC00488-201ENST00000494582 LRSAM1Q6UWE0 723 aa12.52□□□□□ -0.41
LINC00488-201ENST00000494582 TMEM57Q8N5G2 664 aa12.52□□□□□ -0.41
LINC00488-201ENST00000494582 CEP152O94986 1710 aa12.51□□□□□ -0.41
LINC00488-201ENST00000494582 BMP2KLQ5H9B9 411 aa12.51□□□□□ -0.41
LINC00488-201ENST00000494582 CHD1LQ86WJ1 897 aa12.51□□□□□ -0.41
LINC00488-201ENST00000494582 ZBTB40Q9NUA8 1239 aa12.51□□□□□ -0.41
LINC00488-201ENST00000494582 KIF16BQ96L93 1317 aa12.51□□□□□ -0.41
LINC00488-201ENST00000494582 MADDQ8WXG6 1647 aa12.51□□□□□ -0.41
LINC00488-201ENST00000494582 KIAA2012Q0VF49 1180 aa12.51□□□□□ -0.41
LINC00488-201ENST00000494582 SSH1Q8WYL5 1049 aa12.51□□□□□ -0.41
LINC00488-201ENST00000494582 CFAP74Q9C0B2 1584 aa12.5□□□□□ -0.41
LINC00488-201ENST00000494582 VGLL3A8MV65 326 aa12.5□□□□□ -0.41
LINC00488-201ENST00000494582 LETM1O95202 739 aaPredicted RBP12.5□□□□□ -0.41
LINC00488-201ENST00000494582 GTF2F1P35269 517 aaKnown RBP eCLIP12.5□□□□□ -0.41
LINC00488-201ENST00000494582 ZGPATQ8N5A5 531 aaKnown RBP12.5□□□□□ -0.41
LINC00488-201ENST00000494582 SMC4Q9NTJ3 1288 aa12.5□□□□□ -0.41
LINC00488-201ENST00000494582 KANK1Q14678 1352 aa12.5□□□□□ -0.41
LINC00488-201ENST00000494582 CDCA8Q53HL2 280 aa12.49□□□□□ -0.41
LINC00488-201ENST00000494582 DNTTIP2Q5QJE6 756 aaKnown RBP12.49□□□□□ -0.41
LINC00488-201ENST00000494582 BCL2L12Q9HB09 334 aa12.49□□□□□ -0.41
LINC00488-201ENST00000494582 DDX19BQ9UMR2 479 aa12.49□□□□□ -0.41
LINC00488-201ENST00000494582 SCAF11Q99590 1463 aaKnown RBP12.49□□□□□ -0.41
LINC00488-201ENST00000494582 NOB1Q9ULX3 412 aaKnown RBP12.49□□□□□ -0.41
LINC00488-201ENST00000494582 EXOSC9Q06265 439 aaKnown RBP12.48□□□□□ -0.41
LINC00488-201ENST00000494582 ATF7IPQ6VMQ6 1270 aa12.48□□□□□ -0.41
LINC00488-201ENST00000494582 POTEDQ86YR6 584 aa12.48□□□□□ -0.41
LINC00488-201ENST00000494582 PTMAP06454 111 aaKnown RBP12.47□□□□□ -0.41
LINC00488-201ENST00000494582 U2AF2P26368 475 aaKnown RBP eCLIP12.47□□□□□ -0.41
LINC00488-201ENST00000494582 HMGN5P82970 282 aaKnown RBP12.47□□□□□ -0.41
LINC00488-201ENST00000494582 UNC13BO14795 1591 aa12.47□□□□□ -0.41
LINC00488-201ENST00000494582 KDM5AP29375 1690 aaKnown RBP12.47□□□□□ -0.41
LINC00488-201ENST00000494582 NUCB2P80303 420 aa12.47□□□□□ -0.41
LINC00488-201ENST00000494582 NOLC1Q14978 699 aaKnown RBP eCLIP12.47□□□□□ -0.41
LINC00488-201ENST00000494582 FOXD4L5Q5VV16 416 aaPredicted RBP12.47□□□□□ -0.41
LINC00488-201ENST00000494582 FOXD4L4Q8WXT5 416 aaPredicted RBP12.47□□□□□ -0.41
LINC00488-201ENST00000494582 PRIMPOLQ96LW4 560 aa12.47□□□□□ -0.41
LINC00488-201ENST00000494582 CCDC27Q2M243 656 aa12.46□□□□□ -0.41
LINC00488-201ENST00000494582 ANKRD45Q5TZF3 282 aa12.46□□□□□ -0.41
LINC00488-201ENST00000494582 TTC12Q9H892 705 aaPredicted RBP12.46□□□□□ -0.41
LINC00488-201ENST00000494582 ERVK-7P63135 1459 aa12.46□□□□□ -0.41
LINC00488-201ENST00000494582 PIBF1Q8WXW3 757 aa12.46□□□□□ -0.42
LINC00488-201ENST00000494582 ARHGEF5Q12774 1597 aa12.46□□□□□ -0.42
LINC00488-201ENST00000494582 C1orf115Q9H7X2 142 aa12.45□□□□□ -0.42
LINC00488-201ENST00000494582 CGNQ9P2M7 1197 aaKnown RBP12.45□□□□□ -0.42
LINC00488-201ENST00000494582 KIF3AQ9Y496 699 aa12.45□□□□□ -0.42
LINC00488-201ENST00000494582 NOS1P29475 1434 aa12.44□□□□□ -0.42
LINC00488-201ENST00000494582 PPIP5K1Q6PFW1 1433 aa12.44□□□□□ -0.42
LINC00488-201ENST00000494582 PDIA4P13667 645 aaKnown RBP12.44□□□□□ -0.42
LINC00488-201ENST00000494582 GSPT1P15170 499 aaKnown RBP12.44□□□□□ -0.42
LINC00488-201ENST00000494582 PDCL2Q8N4E4 241 aa12.44□□□□□ -0.42
LINC00488-201ENST00000494582 ATP10AO60312 1499 aa12.44□□□□□ -0.42
LINC00488-201ENST00000494582 IQGAP3Q86VI3 1631 aa12.43□□□□□ -0.42
LINC00488-201ENST00000494582 SAMD9LQ8IVG5 1584 aa12.42□□□□□ -0.42
LINC00488-201ENST00000494582 MTHFSP49914 203 aa12.42□□□□□ -0.42
LINC00488-201ENST00000494582 FKBP5Q13451 457 aaPredicted RBP12.42□□□□□ -0.42
LINC00488-201ENST00000494582 RABEP1Q15276 862 aa12.42□□□□□ -0.42
LINC00488-201ENST00000494582 MORC1Q86VD1 984 aa12.42□□□□□ -0.42
LINC00488-201ENST00000494582 MAGI1Q96QZ7 1491 aaPredicted RBP12.42□□□□□ -0.42
LINC00488-201ENST00000494582 SIRT2Q8IXJ6 389 aa12.42□□□□□ -0.42
LINC00488-201ENST00000494582 IPO4Q8TEX9 1081 aaKnown RBP12.42□□□□□ -0.42
LINC00488-201ENST00000494582 ANKRD7Q92527 254 aa12.42□□□□□ -0.42
LINC00488-201ENST00000494582 TSPY26PQ9H489 355 aa12.42□□□□□ -0.42
LINC00488-201ENST00000494582 SPTLC3Q9NUV7 552 aa12.42□□□□□ -0.42
LINC00488-201ENST00000494582 PLCD3Q8N3E9 789 aa12.41□□□□□ -0.42
LINC00488-201ENST00000494582 USP25Q9UHP3 1055 aa12.41□□□□□ -0.42
LINC00488-201ENST00000494582 PLEKHD1A6NEE1 506 aa12.41□□□□□ -0.42
LINC00488-201ENST00000494582 RIOK3O14730 519 aaKnown RBP12.41□□□□□ -0.42
LINC00488-201ENST00000494582 CDC45O75419 566 aa12.41□□□□□ -0.42
LINC00488-201ENST00000494582 TTC37Q6PGP7 1564 aa12.41□□□□□ -0.42
LINC00488-201ENST00000494582 ZNF518AQ6AHZ1 1483 aa12.4□□□□□ -0.42
LINC00488-201ENST00000494582 CD109Q6YHK3 1445 aa12.4□□□□□ -0.42
LINC00488-201ENST00000494582 NSD3Q9BZ95 1437 aa12.4□□□□□ -0.42
LINC00488-201ENST00000494582 USP26Q9BXU7 913 aa12.4□□□□□ -0.42
LINC00488-201ENST00000494582 TRIM35Q9UPQ4 493 aa12.4□□□□□ -0.42
LINC00488-201ENST00000494582 GADD45BO75293 160 aaPredicted RBP12.39□□□□□ -0.43
LINC00488-201ENST00000494582 ADGRB2O60241 1585 aa12.39□□□□□ -0.43
LINC00488-201ENST00000494582 SPHKAPQ2M3C7 1700 aa12.38□□□□□ -0.43
LINC00488-201ENST00000494582 CT47B1P0C2W7 299 aaPredicted RBP12.38□□□□□ -0.43
LINC00488-201ENST00000494582 U2AF1L5P0DN76 240 aaPredicted RBP12.38□□□□□ -0.43
LINC00488-201ENST00000494582 U2AF1Q01081 240 aaKnown RBP eCLIP12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms