RNA–Protein interactions for RNA: ENST00000494333.1

RIF1-211, Transcript of replication timing regulatory factor 1, humanhuman

TSL 3

Gene RIF1, Length 743 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-211ENST00000494333 REREQ9P2R6 1566 aa12.64□□□□□ -0.39
RIF1-211ENST00000494333 NBPF26B4DH59 902 aa12.64□□□□□ -0.39
RIF1-211ENST00000494333 GGT6Q6P531 493 aa12.64□□□□□ -0.39
RIF1-211ENST00000494333 NUDT18Q6ZVK8 323 aa12.64□□□□□ -0.39
RIF1-211ENST00000494333 PNMA3Q9UL41 463 aa12.64□□□□□ -0.39
RIF1-211ENST00000494333 SMAPO00193 183 aa12.63□□□□□ -0.39
RIF1-211ENST00000494333 OATP04181 439 aa12.63□□□□□ -0.39
RIF1-211ENST00000494333 TSPY4P0CV99 314 aa12.63□□□□□ -0.39
RIF1-211ENST00000494333 TSPY10P0CW01 314 aa12.63□□□□□ -0.39
RIF1-211ENST00000494333 FER1L4A9Z1Z3 1794 aa12.63□□□□□ -0.39
RIF1-211ENST00000494333 ATP7AQ04656 1500 aa12.62□□□□□ -0.39
RIF1-211ENST00000494333 A2MP01023 1474 aa12.62□□□□□ -0.39
RIF1-211ENST00000494333 BHMG1C9JSJ3 638 aaPredicted RBP12.62□□□□□ -0.39
RIF1-211ENST00000494333 HRO43593 1189 aa12.62□□□□□ -0.39
RIF1-211ENST00000494333 EYA1Q99502 592 aa12.62□□□□□ -0.39
RIF1-211ENST00000494333 SUPT6HQ7KZ85 1726 aaKnown RBP12.62□□□□□ -0.39
RIF1-211ENST00000494333 TRIM66O15016 1216 aa12.61□□□□□ -0.39
RIF1-211ENST00000494333 METTL3Q86U44 580 aaKnown RBP12.61□□□□□ -0.39
RIF1-211ENST00000494333 RBM46Q8TBY0 533 aaKnown RBP12.61□□□□□ -0.39
RIF1-211ENST00000494333 PXYLP1Q8TE99 480 aa12.61□□□□□ -0.39
RIF1-211ENST00000494333 MAP3K1Q13233 1512 aa12.61□□□□□ -0.39
RIF1-211ENST00000494333 RTEL1-TNFRSF6BF6WH68 1400 aa12.61□□□□□ -0.39
RIF1-211ENST00000494333 SEPT9Q9UHD8 586 aaPredicted RBP12.6□□□□□ -0.39
RIF1-211ENST00000494333 CAMSAP2Q08AD1 1489 aa12.59□□□□□ -0.39
RIF1-211ENST00000494333 ZMYM3Q14202 1370 aa12.59□□□□□ -0.39
RIF1-211ENST00000494333 PHOX2BQ99453 314 aa12.59□□□□□ -0.39
RIF1-211ENST00000494333 CNTLNQ9NXG0 1405 aa12.59□□□□□ -0.39
RIF1-211ENST00000494333 DHX29Q7Z478 1369 aaKnown RBP12.58□□□□□ -0.4
RIF1-211ENST00000494333 KIF3BO15066 747 aa12.58□□□□□ -0.4
RIF1-211ENST00000494333 NBPF3Q9H094 633 aa12.58□□□□□ -0.4
RIF1-211ENST00000494333 INO80Q9ULG1 1556 aaPredicted RBP12.58□□□□□ -0.4
RIF1-211ENST00000494333 CCDC141Q6ZP82 1450 aa12.58□□□□□ -0.4
RIF1-211ENST00000494333 UHRF1BP1Q6BDS2 1440 aa12.56□□□□□ -0.4
RIF1-211ENST00000494333 PCDH10Q9P2E7 1040 aa12.56□□□□□ -0.4
RIF1-211ENST00000494333 MYOM3Q5VTT5 1437 aa12.55□□□□□ -0.4
RIF1-211ENST00000494333 MIA2Q96PC5 1412 aa12.55□□□□□ -0.4
RIF1-211ENST00000494333 MRPL50Q8N5N7 158 aaKnown RBP12.55□□□□□ -0.4
RIF1-211ENST00000494333 NLRP7Q8WX94 980 aa12.55□□□□□ -0.4
RIF1-211ENST00000494333 RCCD1A6NED2 376 aa12.54□□□□□ -0.4
RIF1-211ENST00000494333 LAPTM4BQ86VI4 370 aa12.54□□□□□ -0.4
RIF1-211ENST00000494333 STAC3Q96MF2 364 aa12.54□□□□□ -0.4
RIF1-211ENST00000494333 PLXNC1O60486 1568 aa12.54□□□□□ -0.4
RIF1-211ENST00000494333 FAM98CQ17RN3 349 aaKnown RBP12.53□□□□□ -0.4
RIF1-211ENST00000494333 C3P01024 1663 aa12.52□□□□□ -0.4
RIF1-211ENST00000494333 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.52□□□□□ -0.41
RIF1-211ENST00000494333 PDE4DQ08499 809 aa12.52□□□□□ -0.41
RIF1-211ENST00000494333 AMHR2Q16671 573 aa12.52□□□□□ -0.41
RIF1-211ENST00000494333 WASHC2CQ9Y4E1 1318 aa12.52□□□□□ -0.41
RIF1-211ENST00000494333 DNAJB2P25686 324 aa12.51□□□□□ -0.41
RIF1-211ENST00000494333 NPATQ14207 1427 aa12.51□□□□□ -0.41
RIF1-211ENST00000494333 ARHGEF5Q12774 1597 aa12.51□□□□□ -0.41
RIF1-211ENST00000494333 ADGBQ8N7X0 1667 aa12.51□□□□□ -0.41
RIF1-211ENST00000494333 PREX1Q8TCU6 1659 aa12.51□□□□□ -0.41
RIF1-211ENST00000494333 SETD1BQ9UPS6 1966 aaKnown RBP12.5□□□□□ -0.41
RIF1-211ENST00000494333 MDM2Q00987 491 aaPredicted RBP12.5□□□□□ -0.41
RIF1-211ENST00000494333 FBXO31Q5XUX0 539 aaPredicted RBP12.49□□□□□ -0.41
RIF1-211ENST00000494333 ZFRQ96KR1 1074 aaKnown RBP12.49□□□□□ -0.41
RIF1-211ENST00000494333 PTPRKQ15262 1439 aa12.48□□□□□ -0.41
RIF1-211ENST00000494333 FBXO41Q8TF61 875 aa12.48□□□□□ -0.41
RIF1-211ENST00000494333 REPIN1Q9BWE0 567 aaKnown RBP12.48□□□□□ -0.41
RIF1-211ENST00000494333 TMEM134Q9H6X4 195 aa12.48□□□□□ -0.41
RIF1-211ENST00000494333 RRP7BPQ9NSQ0 103 aa12.48□□□□□ -0.41
RIF1-211ENST00000494333 TTLL12Q14166 644 aaPredicted RBP12.47□□□□□ -0.41
RIF1-211ENST00000494333 TMUB1Q9BVT8 246 aa12.47□□□□□ -0.41
RIF1-211ENST00000494333 CHIC2Q9UKJ5 165 aa12.47□□□□□ -0.41
RIF1-211ENST00000494333 CLTCQ00610 1675 aaKnown RBP12.47□□□□□ -0.41
RIF1-211ENST00000494333 ABCC5O15440 1437 aa12.46□□□□□ -0.41
RIF1-211ENST00000494333 FGD6Q6ZV73 1430 aa12.46□□□□□ -0.41
RIF1-211ENST00000494333 GOLGA8CPA6NN73 597 aa12.46□□□□□ -0.41
RIF1-211ENST00000494333 BRPF1P55201 1214 aaPredicted RBP12.46□□□□□ -0.41
RIF1-211ENST00000494333 PARP9Q8IXQ6 854 aa12.46□□□□□ -0.41
RIF1-211ENST00000494333 MROH2AA6NES4 1674 aa12.45□□□□□ -0.42
RIF1-211ENST00000494333 CLCN1P35523 988 aa12.45□□□□□ -0.42
RIF1-211ENST00000494333 FAM50AQ14320 339 aaKnown RBP12.45□□□□□ -0.42
RIF1-211ENST00000494333 SWT1Q5T5J6 900 aaKnown RBP12.45□□□□□ -0.42
RIF1-211ENST00000494333 SAMD7Q7Z3H4 446 aa12.45□□□□□ -0.42
RIF1-211ENST00000494333 GPCPD1Q9NPB8 672 aa12.45□□□□□ -0.42
RIF1-211ENST00000494333 MAST1Q9Y2H9 1570 aa12.44□□□□□ -0.42
RIF1-211ENST00000494333 NEUROD2Q15784 382 aa12.44□□□□□ -0.42
RIF1-211ENST00000494333 GPBP1L1Q9HC44 474 aaPredicted RBP12.44□□□□□ -0.42
RIF1-211ENST00000494333 DAXXQ9UER7 740 aaPredicted RBP12.44□□□□□ -0.42
RIF1-211ENST00000494333 HDGFP51858 240 aaKnown RBP12.43□□□□□ -0.42
RIF1-211ENST00000494333 GIGYF2Q6Y7W6 1299 aaKnown RBP12.43□□□□□ -0.42
RIF1-211ENST00000494333 PTPN23Q9H3S7 1636 aa12.43□□□□□ -0.42
RIF1-211ENST00000494333 DAPK1P53355 1430 aa12.43□□□□□ -0.42
RIF1-211ENST00000494333 KIF15Q9NS87 1388 aa12.43□□□□□ -0.42
RIF1-211ENST00000494333 PPARGC1BQ86YN6 1023 aaKnown RBP12.42□□□□□ -0.42
RIF1-211ENST00000494333 WNT2BQ93097 391 aa12.42□□□□□ -0.42
RIF1-211ENST00000494333 PTPRTO14522 1441 aa12.42□□□□□ -0.42
RIF1-211ENST00000494333 TNRQ92752 1358 aa12.42□□□□□ -0.42
RIF1-211ENST00000494333 KDM5DQ9BY66 1539 aa12.42□□□□□ -0.42
RIF1-211ENST00000494333 TCOF1Q13428 1488 aaKnown RBP12.41□□□□□ -0.42
RIF1-211ENST00000494333 NCOA1Q15788 1441 aa12.41□□□□□ -0.42
RIF1-211ENST00000494333 STRCQ7RTU9 1775 aa12.41□□□□□ -0.42
RIF1-211ENST00000494333 PZPP20742 1482 aa12.4□□□□□ -0.42
RIF1-211ENST00000494333 SPNS2Q8IVW8 549 aa12.4□□□□□ -0.42
RIF1-211ENST00000494333 ANKK1Q8NFD2 765 aa12.4□□□□□ -0.42
RIF1-211ENST00000494333 KDM4CQ9H3R0 1056 aa12.4□□□□□ -0.42
RIF1-211ENST00000494333 DUOX2Q9NRD8 1548 aa12.4□□□□□ -0.42
RIF1-211ENST00000494333 ANKRD30AQ9BXX3 1397 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 274.5 ms