RNA–Protein interactions for RNA: ENST00000494323.5

PTCD3-219, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 540 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-219ENST00000494323 TBC1D2Q9BYX2 928 aa8.78□□□□□ -1
PTCD3-219ENST00000494323 PRKD2Q9BZL6 878 aa8.78□□□□□ -1
PTCD3-219ENST00000494323 UHRF1BP1LA0JNW5 1464 aa8.77□□□□□ -1
PTCD3-219ENST00000494323 ADH1BP00325 375 aa8.77□□□□□ -1.01
PTCD3-219ENST00000494323 MYSM1Q5VVJ2 828 aa8.77□□□□□ -1.01
PTCD3-219ENST00000494323 SCUBE3Q8IX30 993 aa8.77□□□□□ -1.01
PTCD3-219ENST00000494323 PPRC1Q5VV67 1664 aaKnown RBP8.77□□□□□ -1.01
PTCD3-219ENST00000494323 RAPGEF2Q9Y4G8 1499 aa8.77□□□□□ -1.01
PTCD3-219ENST00000494323 EPRSP07814 1512 aaKnown RBP8.76□□□□□ -1.01
PTCD3-219ENST00000494323 ATP6V1AP38606 617 aa8.76□□□□□ -1.01
PTCD3-219ENST00000494323 SPIRE2Q8WWL2 714 aa8.76□□□□□ -1.01
PTCD3-219ENST00000494323 GLI2P10070 1586 aa8.76□□□□□ -1.01
PTCD3-219ENST00000494323 ARID3CA6NKF2 412 aa8.75□□□□□ -1.01
PTCD3-219ENST00000494323 S1PR4O95977 384 aa8.75□□□□□ -1.01
PTCD3-219ENST00000494323 USP46P62068 366 aa8.75□□□□□ -1.01
PTCD3-219ENST00000494323 MORN1Q5T089 497 aa8.75□□□□□ -1.01
PTCD3-219ENST00000494323 V9GY48 417 aaPredicted RBP8.75□□□□□ -1.01
PTCD3-219ENST00000494323 ADGRL1O94910 1474 aa8.75□□□□□ -1.01
PTCD3-219ENST00000494323 KDM5BQ9UGL1 1544 aa8.75□□□□□ -1.01
PTCD3-219ENST00000494323 RNF223E7ERA6 249 aa8.74□□□□□ -1.01
PTCD3-219ENST00000494323 KDM4AO75164 1064 aa8.74□□□□□ -1.01
PTCD3-219ENST00000494323 CLK2P49760 499 aaKnown RBP8.74□□□□□ -1.01
PTCD3-219ENST00000494323 SPSB2Q99619 263 aa8.74□□□□□ -1.01
PTCD3-219ENST00000494323 POLR3EQ9NVU0 708 aa8.74□□□□□ -1.01
PTCD3-219ENST00000494323 GJA5P36382 358 aa8.73□□□□□ -1.01
PTCD3-219ENST00000494323 GRIPAP1Q4V328 841 aa8.73□□□□□ -1.01
PTCD3-219ENST00000494323 SLC6A16Q9GZN6 736 aa8.73□□□□□ -1.01
PTCD3-219ENST00000494323 ATP1B4Q9UN42 357 aaPredicted RBP8.73□□□□□ -1.01
PTCD3-219ENST00000494323 UGGT2Q9NYU1 1516 aa8.73□□□□□ -1.01
PTCD3-219ENST00000494323 ZCCHC11Q5TAX3 1644 aaKnown RBP8.72□□□□□ -1.01
PTCD3-219ENST00000494323 RIC3Q7Z5B4 369 aa8.72□□□□□ -1.01
PTCD3-219ENST00000494323 ANKLE1Q8NAG6 615 aa8.72□□□□□ -1.01
PTCD3-219ENST00000494323 SPTLC1O15269 473 aa8.71□□□□□ -1.02
PTCD3-219ENST00000494323 TUSC1Q2TAM9 212 aa8.71□□□□□ -1.02
PTCD3-219ENST00000494323 SLC27A5Q9Y2P5 690 aa8.71□□□□□ -1.02
PTCD3-219ENST00000494323 MAP3K4Q9Y6R4 1608 aa8.71□□□□□ -1.02
PTCD3-219ENST00000494323 CD109Q6YHK3 1445 aa8.71□□□□□ -1.02
PTCD3-219ENST00000494323 TEX14Q8IWB6 1497 aa8.7□□□□□ -1.02
PTCD3-219ENST00000494323 KIAA0556O60303 1618 aa8.7□□□□□ -1.02
PTCD3-219ENST00000494323 PPEF1O14829 653 aaPredicted RBP8.7□□□□□ -1.02
PTCD3-219ENST00000494323 FMNL1O95466 1100 aaPredicted RBP8.7□□□□□ -1.02
PTCD3-219ENST00000494323 RSBN1LQ6PCB5 846 aaPredicted RBP8.7□□□□□ -1.02
PTCD3-219ENST00000494323 PROCA1Q8NCQ7 364 aaPredicted RBP8.7□□□□□ -1.02
PTCD3-219ENST00000494323 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.7□□□□□ -1.02
PTCD3-219ENST00000494323 WDR7Q9Y4E6 1490 aa8.7□□□□□ -1.02
PTCD3-219ENST00000494323 MOXD2PA6NHM9 499 aa8.69□□□□□ -1.02
PTCD3-219ENST00000494323 RANGAP1P46060 587 aaPredicted RBP8.69□□□□□ -1.02
PTCD3-219ENST00000494323 LAPTM4AQ15012 233 aa8.69□□□□□ -1.02
PTCD3-219ENST00000494323 FAM9AQ8IZU1 332 aaPredicted RBP8.69□□□□□ -1.02
PTCD3-219ENST00000494323 HOXA2O43364 376 aa8.68□□□□□ -1.02
PTCD3-219ENST00000494323 THAP11Q96EK4 314 aa8.68□□□□□ -1.02
PTCD3-219ENST00000494323 LIMD1Q9UGP4 676 aa8.68□□□□□ -1.02
PTCD3-219ENST00000494323 GFRA3O60609 400 aa8.67□□□□□ -1.02
PTCD3-219ENST00000494323 SLC19A1P41440 591 aa8.67□□□□□ -1.02
PTCD3-219ENST00000494323 SALL2Q9Y467 1007 aaPredicted RBP8.67□□□□□ -1.02
PTCD3-219ENST00000494323 GOLGA3Q08378 1498 aa8.66□□□□□ -1.02
PTCD3-219ENST00000494323 RAPGEF3O95398 923 aa8.66□□□□□ -1.02
PTCD3-219ENST00000494323 NDUFV2P19404 249 aa8.66□□□□□ -1.02
PTCD3-219ENST00000494323 Q3C1V9 767 aa8.66□□□□□ -1.02
PTCD3-219ENST00000494323 Q6ZNB5 142 aa8.66□□□□□ -1.02
PTCD3-219ENST00000494323 HECW2Q9P2P5 1572 aa8.65□□□□□ -1.02
PTCD3-219ENST00000494323 FDX1P10109 184 aa8.65□□□□□ -1.02
PTCD3-219ENST00000494323 FLIIQ13045 1269 aa8.65□□□□□ -1.02
PTCD3-219ENST00000494323 PPP2R2DQ66LE6 453 aa8.65□□□□□ -1.02
PTCD3-219ENST00000494323 BRICD5Q6PL45 260 aa8.65□□□□□ -1.02
PTCD3-219ENST00000494323 RNF19BQ6ZMZ0 732 aa8.65□□□□□ -1.02
PTCD3-219ENST00000494323 ABCA8O94911 1581 aa8.65□□□□□ -1.03
PTCD3-219ENST00000494323 MAGI3Q5TCQ9 1506 aa8.64□□□□□ -1.03
PTCD3-219ENST00000494323 PRPF38BQ5VTL8 546 aaKnown RBP8.64□□□□□ -1.03
PTCD3-219ENST00000494323 ARXQ96QS3 562 aa8.64□□□□□ -1.03
PTCD3-219ENST00000494323 CTTNBP2Q8WZ74 1663 aa8.64□□□□□ -1.03
PTCD3-219ENST00000494323 ATP10BO94823 1461 aa8.64□□□□□ -1.03
PTCD3-219ENST00000494323 PRXQ9BXM0 1461 aa8.64□□□□□ -1.03
PTCD3-219ENST00000494323 NRG2O14511 850 aaPredicted RBP8.63□□□□□ -1.03
PTCD3-219ENST00000494323 CSPP1Q1MSJ5 1256 aa8.63□□□□□ -1.03
PTCD3-219ENST00000494323 MSS51Q4VC12 460 aa8.63□□□□□ -1.03
PTCD3-219ENST00000494323 SPRYD7Q5W111 196 aa8.63□□□□□ -1.03
PTCD3-219ENST00000494323 FAM160A2Q8N612 972 aaPredicted RBP8.63□□□□□ -1.03
PTCD3-219ENST00000494323 EMID1Q96A84 441 aaPredicted RBP8.63□□□□□ -1.03
PTCD3-219ENST00000494323 ARID4BQ4LE39 1312 aaPredicted RBP8.62□□□□□ -1.03
PTCD3-219ENST00000494323 LILRB3O75022 631 aa8.62□□□□□ -1.03
PTCD3-219ENST00000494323 RFC5P40937 340 aa8.62□□□□□ -1.03
PTCD3-219ENST00000494323 LIAT1Q6ZQX7 453 aa8.62□□□□□ -1.03
PTCD3-219ENST00000494323 ZBTB3Q9H5J0 574 aa8.62□□□□□ -1.03
PTCD3-219ENST00000494323 PRDM9Q9NQV7 894 aa8.62□□□□□ -1.03
PTCD3-219ENST00000494323 PDZRN3Q9UPQ7 1066 aa8.62□□□□□ -1.03
PTCD3-219ENST00000494323 FCF1Q9Y324 198 aaKnown RBP8.62□□□□□ -1.03
PTCD3-219ENST00000494323 PCDHB15Q9Y5E8 787 aa8.62□□□□□ -1.03
PTCD3-219ENST00000494323 CFAP43Q8NDM7 1665 aa8.62□□□□□ -1.03
PTCD3-219ENST00000494323 NUTM2BA6NNL0 878 aaPredicted RBP8.61□□□□□ -1.03
PTCD3-219ENST00000494323 NUTM2EB1AL46 878 aaPredicted RBP8.61□□□□□ -1.03
PTCD3-219ENST00000494323 TMEM259Q4ZIN3 620 aa8.61□□□□□ -1.03
PTCD3-219ENST00000494323 PLA2G2CQ5R387 149 aa8.61□□□□□ -1.03
PTCD3-219ENST00000494323 NUTM2DQ5VT03 806 aaPredicted RBP8.61□□□□□ -1.03
PTCD3-219ENST00000494323 ZNF598Q86UK7 904 aaKnown RBP8.61□□□□□ -1.03
PTCD3-219ENST00000494323 NUTM2AQ8IVF1 878 aaPredicted RBP8.61□□□□□ -1.03
PTCD3-219ENST00000494323 HLA-CQ95604 372 aa8.61□□□□□ -1.03
PTCD3-219ENST00000494323 GUCA2AQ02747 115 aa8.6□□□□□ -1.03
PTCD3-219ENST00000494323 QPCTQ16769 361 aa8.6□□□□□ -1.03
PTCD3-219ENST00000494323 ZNF697Q5TEC3 545 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms