RNA–Protein interactions for RNA: ENST00000493430.5

PTCD3-218, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 782 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-218ENST00000493430 ZNF511Q8NB15 262 aa8.09□□□□□ -1.11
PTCD3-218ENST00000493430 ATP13A2Q9NQ11 1180 aa8.09□□□□□ -1.11
PTCD3-218ENST00000493430 WASF2Q9Y6W5 498 aa8.09□□□□□ -1.11
PTCD3-218ENST00000493430 RSPH6AQ9H0K4 717 aa8.08□□□□□ -1.12
PTCD3-218ENST00000493430 LIMD1Q9UGP4 676 aa8.08□□□□□ -1.12
PTCD3-218ENST00000493430 VARSP26640 1264 aaKnown RBP8.07□□□□□ -1.12
PTCD3-218ENST00000493430 SENP2Q9HC62 589 aa8.07□□□□□ -1.12
PTCD3-218ENST00000493430 PLEKHG3A1L390 1219 aa8.06□□□□□ -1.12
PTCD3-218ENST00000493430 LILRB3O75022 631 aa8.06□□□□□ -1.12
PTCD3-218ENST00000493430 QPCTQ16769 361 aa8.06□□□□□ -1.12
PTCD3-218ENST00000493430 TSC1Q92574 1164 aa8.06□□□□□ -1.12
PTCD3-218ENST00000493430 BCANQ96GW7 911 aa8.06□□□□□ -1.12
PTCD3-218ENST00000493430 F12P00748 615 aaPredicted RBP8.05□□□□□ -1.12
PTCD3-218ENST00000493430 MAP10Q9P2G4 905 aa8.05□□□□□ -1.12
PTCD3-218ENST00000493430 PER1O15534 1290 aaPredicted RBP8.04□□□□□ -1.12
PTCD3-218ENST00000493430 CLK2P49760 499 aaKnown RBP8.04□□□□□ -1.12
PTCD3-218ENST00000493430 TREML4Q6UXN2 200 aa8.04□□□□□ -1.12
PTCD3-218ENST00000493430 MPNDQ8N594 471 aa8.04□□□□□ -1.12
PTCD3-218ENST00000493430 TRIM47Q96LD4 638 aa8.04□□□□□ -1.12
PTCD3-218ENST00000493430 CAPN5O15484 640 aaPredicted RBP8.03□□□□□ -1.12
PTCD3-218ENST00000493430 FAM174AQ8TBP5 190 aa8.03□□□□□ -1.12
PTCD3-218ENST00000493430 KIFC2Q96AC6 838 aa8.03□□□□□ -1.12
PTCD3-218ENST00000493430 POLR3EQ9NVU0 708 aa8.03□□□□□ -1.12
PTCD3-218ENST00000493430 SNRPBP14678 240 aaKnown RBP8.02□□□□□ -1.13
PTCD3-218ENST00000493430 RTL5Q5HYW3 569 aaPredicted RBP8.02□□□□□ -1.13
PTCD3-218ENST00000493430 HELBQ8NG08 1087 aaPredicted RBP8.02□□□□□ -1.13
PTCD3-218ENST00000493430 TLL2Q9Y6L7 1015 aa8.02□□□□□ -1.13
PTCD3-218ENST00000493430 AGERQ15109 404 aa8.01□□□□□ -1.13
PTCD3-218ENST00000493430 ARMC2Q8NEN0 867 aa8.01□□□□□ -1.13
PTCD3-218ENST00000493430 FOXJ1Q92949 421 aa8.01□□□□□ -1.13
PTCD3-218ENST00000493430 WFS1O76024 890 aa7.99□□□□□ -1.13
PTCD3-218ENST00000493430 NNTQ13423 1086 aa7.99□□□□□ -1.13
PTCD3-218ENST00000493430 LCE2AQ5TA79 106 aaPredicted RBP7.99□□□□□ -1.13
PTCD3-218ENST00000493430 BPHLQ86WA6 291 aaPredicted RBP7.99□□□□□ -1.13
PTCD3-218ENST00000493430 ARID5BQ14865 1188 aa7.98□□□□□ -1.13
PTCD3-218ENST00000493430 CDK15Q96Q40 435 aa7.98□□□□□ -1.13
PTCD3-218ENST00000493430 KDM4CQ9H3R0 1056 aa7.98□□□□□ -1.13
PTCD3-218ENST00000493430 SLC24A1O60721 1099 aa7.97□□□□□ -1.13
PTCD3-218ENST00000493430 ADH1CP00326 375 aa7.97□□□□□ -1.13
PTCD3-218ENST00000493430 BMP1P13497 986 aa7.97□□□□□ -1.13
PTCD3-218ENST00000493430 SKIV2LQ15477 1246 aaKnown RBP7.97□□□□□ -1.13
PTCD3-218ENST00000493430 NBPF14Q5TI25 921 aa7.97□□□□□ -1.13
PTCD3-218ENST00000493430 TRIM46Q7Z4K8 759 aa7.97□□□□□ -1.13
PTCD3-218ENST00000493430 DDRGK1Q96HY6 314 aa7.97□□□□□ -1.13
PTCD3-218ENST00000493430 GPBP1L1Q9HC44 474 aaPredicted RBP7.96□□□□□ -1.14
PTCD3-218ENST00000493430 ATP1B4Q9UN42 357 aaPredicted RBP7.96□□□□□ -1.14
PTCD3-218ENST00000493430 TERTO14746 1132 aaKnown RBP7.95□□□□□ -1.14
PTCD3-218ENST00000493430 WDR4P57081 412 aaKnown RBP7.95□□□□□ -1.14
PTCD3-218ENST00000493430 CTDSPL2Q05D32 466 aa7.95□□□□□ -1.14
PTCD3-218ENST00000493430 NFX1Q12986 1120 aaKnown RBP7.95□□□□□ -1.14
PTCD3-218ENST00000493430 NR5A1Q13285 461 aa7.95□□□□□ -1.14
PTCD3-218ENST00000493430 C4orf48Q5BLP8 95 aa7.95□□□□□ -1.14
PTCD3-218ENST00000493430 SH3D19Q5HYK7 790 aa7.95□□□□□ -1.14
PTCD3-218ENST00000493430 FAM117AQ9C073 453 aa7.95□□□□□ -1.14
PTCD3-218ENST00000493430 TIMP2P16035 220 aa7.93□□□□□ -1.14
PTCD3-218ENST00000493430 SH3RF1Q7Z6J0 888 aa7.93□□□□□ -1.14
PTCD3-218ENST00000493430 GPKOWQ92917 476 aaPredicted RBP eCLIP7.93□□□□□ -1.142e-6■■■□□ 15.9
PTCD3-218ENST00000493430 KLF16Q9BXK1 252 aaPredicted RBP7.93□□□□□ -1.14
PTCD3-218ENST00000493430 GRM5P41594 1212 aa7.92□□□□□ -1.14
PTCD3-218ENST00000493430 SCARF1Q14162 830 aa7.92□□□□□ -1.14
PTCD3-218ENST00000493430 MRPL14Q6P1L8 145 aaKnown RBP7.92□□□□□ -1.14
PTCD3-218ENST00000493430 SH3BP5LQ7L8J4 393 aa7.92□□□□□ -1.14
PTCD3-218ENST00000493430 PROCA1Q8NCQ7 364 aaPredicted RBP7.92□□□□□ -1.14
PTCD3-218ENST00000493430 ZFP42Q96MM3 310 aa7.92□□□□□ -1.14
PTCD3-218ENST00000493430 MAGEB6P1A0A0J9YX57 407 aa7.91□□□□□ -1.14
PTCD3-218ENST00000493430 PPP2R2DQ66LE6 453 aa7.91□□□□□ -1.14
PTCD3-218ENST00000493430 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.91□□□□□ -1.14
PTCD3-218ENST00000493430 C1QTNF2Q9BXJ5 285 aa7.91□□□□□ -1.14
PTCD3-218ENST00000493430 ZIC2O95409 532 aaPredicted RBP7.9□□□□□ -1.14
PTCD3-218ENST00000493430 NR3C2P08235 984 aa7.9□□□□□ -1.14
PTCD3-218ENST00000493430 TRMT44Q8IYL2 757 aaKnown RBP7.9□□□□□ -1.14
PTCD3-218ENST00000493430 SLC16A10Q8TF71 515 aa7.9□□□□□ -1.14
PTCD3-218ENST00000493430 LRRN4Q8WUT4 740 aa7.9□□□□□ -1.14
PTCD3-218ENST00000493430 NXF1Q9UBU9 619 aaKnown RBP7.9□□□□□ -1.14
PTCD3-218ENST00000493430 VASH1Q7L8A9 365 aaPredicted RBP7.89□□□□□ -1.15
PTCD3-218ENST00000493430 ITPKCQ96DU7 683 aa7.89□□□□□ -1.15
PTCD3-218ENST00000493430 PURBQ96QR8 312 aaKnown RBP7.89□□□□□ -1.15
PTCD3-218ENST00000493430 ZFAND3Q9H8U3 227 aa7.89□□□□□ -1.15
PTCD3-218ENST00000493430 MAP4K5Q9Y4K4 846 aa7.89□□□□□ -1.15
PTCD3-218ENST00000493430 FBXO31Q5XUX0 539 aaPredicted RBP7.88□□□□□ -1.15
PTCD3-218ENST00000493430 PDXDC2PQ6P474 469 aa7.88□□□□□ -1.15
PTCD3-218ENST00000493430 CARD14Q9BXL6 1004 aa7.88□□□□□ -1.15
PTCD3-218ENST00000493430 FKBPLQ9UIM3 349 aa7.88□□□□□ -1.15
PTCD3-218ENST00000493430 WIPF1O43516 503 aa7.87□□□□□ -1.15
PTCD3-218ENST00000493430 AP1G2O75843 785 aa7.87□□□□□ -1.15
PTCD3-218ENST00000493430 FSHRP23945 695 aa7.87□□□□□ -1.15
PTCD3-218ENST00000493430 NR6A1Q15406 480 aa7.87□□□□□ -1.15
PTCD3-218ENST00000493430 NPAS3Q8IXF0 933 aa7.87□□□□□ -1.15
PTCD3-218ENST00000493430 ZC3H4Q9UPT8 1303 aaKnown RBP7.86□□□□□ -1.15
PTCD3-218ENST00000493430 UPP2O95045 317 aa7.86□□□□□ -1.15
PTCD3-218ENST00000493430 ERFEQ4G0M1 354 aa7.86□□□□□ -1.15
PTCD3-218ENST00000493430 ARHGAP9Q9BRR9 750 aa7.86□□□□□ -1.15
PTCD3-218ENST00000493430 INSM1Q01101 510 aaPredicted RBP7.85□□□□□ -1.15
PTCD3-218ENST00000493430 ZBTB33Q86T24 672 aa7.85□□□□□ -1.15
PTCD3-218ENST00000493430 EMILIN1Q9Y6C2 1016 aa7.85□□□□□ -1.15
PTCD3-218ENST00000493430 C6orf118Q5T5N4 469 aa7.84□□□□□ -1.15
PTCD3-218ENST00000493430 LCE2CQ5TA81 110 aa7.84□□□□□ -1.15
PTCD3-218ENST00000493430 CCDC116Q8IYX3 515 aa7.84□□□□□ -1.15
PTCD3-218ENST00000493430 PNMA1Q8ND90 353 aa7.84□□□□□ -1.15
PTCD3-218ENST00000493430 BMP2P12643 396 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms