RNA–Protein interactions for RNA: ENST00000491421.5

LSM2-213, Transcript of LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM2, Length 820 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM2-213ENST00000491421 ABCA3Q99758 1704 aa11.85□□□□□ -0.51
LSM2-213ENST00000491421 ACEP12821 1306 aa11.85□□□□□ -0.51
LSM2-213ENST00000491421 ALS2Q96Q42 1657 aa11.84□□□□□ -0.51
LSM2-213ENST00000491421 ROCK2O75116 1388 aaKnown RBP11.84□□□□□ -0.51
LSM2-213ENST00000491421 NBPF8Q3BBV2 869 aa11.84□□□□□ -0.51
LSM2-213ENST00000491421 CABP2Q9NPB3 220 aa11.84□□□□□ -0.51
LSM2-213ENST00000491421 GLI3P10071 1580 aa11.84□□□□□ -0.51
LSM2-213ENST00000491421 BTG4Q9NY30 223 aa11.83□□□□□ -0.52
LSM2-213ENST00000491421 PLCH1Q4KWH8 1693 aa11.83□□□□□ -0.52
LSM2-213ENST00000491421 TOPAZ1Q8N9V7 1692 aa11.83□□□□□ -0.52
LSM2-213ENST00000491421 PPIP5K1Q6PFW1 1433 aa11.83□□□□□ -0.52
LSM2-213ENST00000491421 NUTM2GQ5VZR2 741 aa11.82□□□□□ -0.52
LSM2-213ENST00000491421 PRDM11Q9NQV5 511 aa11.82□□□□□ -0.52
LSM2-213ENST00000491421 EP400Q96L91 3159 aa11.81□□□□□ -0.52
LSM2-213ENST00000491421 NWD2Q9ULI1 1742 aa11.81□□□□□ -0.52
LSM2-213ENST00000491421 TRIM26Q12899 539 aaPredicted RBP11.81□□□□□ -0.52
LSM2-213ENST00000491421 SEPT12Q8IYM1 358 aa11.81□□□□□ -0.52
LSM2-213ENST00000491421 TRPM1Q7Z4N2 1603 aa11.81□□□□□ -0.52
LSM2-213ENST00000491421 EVC2Q86UK5 1308 aa11.81□□□□□ -0.52
LSM2-213ENST00000491421 QRICH2Q9H0J4 1663 aa11.81□□□□□ -0.52
LSM2-213ENST00000491421 A0A0G2JS52 829 aa11.8□□□□□ -0.52
LSM2-213ENST00000491421 MYT1Q01538 1121 aa11.8□□□□□ -0.52
LSM2-213ENST00000491421 ABTB2Q8N961 1025 aa11.8□□□□□ -0.52
LSM2-213ENST00000491421 KIAA0232Q92628 1395 aa11.79□□□□□ -0.52
LSM2-213ENST00000491421 TONSLQ96HA7 1378 aa11.79□□□□□ -0.52
LSM2-213ENST00000491421 COL14A1Q05707 1796 aaKnown RBP11.79□□□□□ -0.52
LSM2-213ENST00000491421 ONECUT3O60422 494 aaPredicted RBP11.79□□□□□ -0.52
LSM2-213ENST00000491421 ZC3H6P61129 1189 aaKnown RBP11.79□□□□□ -0.52
LSM2-213ENST00000491421 CCDC125Q86Z20 511 aa11.79□□□□□ -0.52
LSM2-213ENST00000491421 CABP1Q9NZU7 370 aa11.79□□□□□ -0.52
LSM2-213ENST00000491421 CRYBG1Q9Y4K1 1723 aa11.78□□□□□ -0.52
LSM2-213ENST00000491421 CHRNA2Q15822 529 aa11.78□□□□□ -0.52
LSM2-213ENST00000491421 FAM98CQ17RN3 349 aaKnown RBP11.78□□□□□ -0.52
LSM2-213ENST00000491421 BRD4O60885 1362 aaPredicted RBP11.78□□□□□ -0.52
LSM2-213ENST00000491421 KRT27Q7Z3Y8 459 aa11.77□□□□□ -0.53
LSM2-213ENST00000491421 NLRP13Q86W25 1043 aa11.77□□□□□ -0.53
LSM2-213ENST00000491421 CARD11Q9BXL7 1154 aa11.77□□□□□ -0.53
LSM2-213ENST00000491421 USP19O94966 1318 aa11.77□□□□□ -0.53
LSM2-213ENST00000491421 SPATA31A5Q5VU36 1347 aa11.77□□□□□ -0.53
LSM2-213ENST00000491421 SPATA31A7Q8IWB4 1347 aa11.77□□□□□ -0.53
LSM2-213ENST00000491421 NRAPQ86VF7 1730 aa11.77□□□□□ -0.53
LSM2-213ENST00000491421 USP6P35125 1406 aa11.77□□□□□ -0.53
LSM2-213ENST00000491421 PHRF1Q9P1Y6 1649 aaKnown RBP11.76□□□□□ -0.53
LSM2-213ENST00000491421 STRN4Q9NRL3 753 aa11.76□□□□□ -0.53
LSM2-213ENST00000491421 BLMP54132 1417 aaPredicted RBP11.76□□□□□ -0.53
LSM2-213ENST00000491421 CPDO75976 1380 aa11.75□□□□□ -0.53
LSM2-213ENST00000491421 NRKQ7Z2Y5 1582 aa11.75□□□□□ -0.53
LSM2-213ENST00000491421 GCP02774 474 aa11.74□□□□□ -0.53
LSM2-213ENST00000491421 NLRP6P59044 892 aa11.74□□□□□ -0.53
LSM2-213ENST00000491421 SF3B2Q13435 895 aaKnown RBP11.74□□□□□ -0.53
LSM2-213ENST00000491421 SPATA31A1Q5TZJ5 1347 aa11.74□□□□□ -0.53
LSM2-213ENST00000491421 EVA1CP58658 441 aa11.73□□□□□ -0.53
LSM2-213ENST00000491421 SBNO2Q9Y2G9 1366 aa11.73□□□□□ -0.53
LSM2-213ENST00000491421 SSH2Q76I76 1423 aa11.72□□□□□ -0.53
LSM2-213ENST00000491421 ZBTB7CA1YPR0 619 aa11.72□□□□□ -0.53
LSM2-213ENST00000491421 ZNF692Q9BU19 519 aaPredicted RBP11.72□□□□□ -0.53
LSM2-213ENST00000491421 TTC21BQ7Z4L5 1316 aa11.71□□□□□ -0.53
LSM2-213ENST00000491421 USP35Q9P2H5 1018 aa11.71□□□□□ -0.53
LSM2-213ENST00000491421 ZRANB1Q9UGI0 708 aa11.71□□□□□ -0.53
LSM2-213ENST00000491421 BRWD3Q6RI45 1802 aa11.71□□□□□ -0.54
LSM2-213ENST00000491421 KTN1Q86UP2 1357 aaKnown RBP11.7□□□□□ -0.54
LSM2-213ENST00000491421 LARP1Q6PKG0 1096 aaKnown RBP11.7□□□□□ -0.54
LSM2-213ENST00000491421 DEFB132Q7Z7B7 95 aa11.7□□□□□ -0.54
LSM2-213ENST00000491421 THSD7AQ9UPZ6 1657 aa11.7□□□□□ -0.54
LSM2-213ENST00000491421 CAMTA1Q9Y6Y1 1673 aa11.7□□□□□ -0.54
LSM2-213ENST00000491421 SLIT3O75094 1523 aa11.7□□□□□ -0.54
LSM2-213ENST00000491421 CPSF1Q10570 1443 aaKnown RBP11.69□□□□□ -0.54
LSM2-213ENST00000491421 TTC21AQ8NDW8 1320 aa11.69□□□□□ -0.54
LSM2-213ENST00000491421 SRCAPQ6ZRS2 3230 aa11.69□□□□□ -0.54
LSM2-213ENST00000491421 FAM182BQ5T319 152 aa11.69□□□□□ -0.54
LSM2-213ENST00000491421 LMO7Q8WWI1 1683 aa11.68□□□□□ -0.54
LSM2-213ENST00000491421 AATKQ6ZMQ8 1374 aa11.68□□□□□ -0.54
LSM2-213ENST00000491421 BARGINQ6ZT62 677 aa11.68□□□□□ -0.54
LSM2-213ENST00000491421 TCP11L2Q8N4U5 519 aa11.68□□□□□ -0.54
LSM2-213ENST00000491421 TMC1Q8TDI8 760 aa11.68□□□□□ -0.54
LSM2-213ENST00000491421 COL5A2P05997 1499 aaPredicted RBP11.68□□□□□ -0.54
LSM2-213ENST00000491421 PIK3C2AO00443 1686 aa11.68□□□□□ -0.54
LSM2-213ENST00000491421 SOX12O15370 315 aa11.67□□□□□ -0.54
LSM2-213ENST00000491421 BAG6P46379 1132 aa11.67□□□□□ -0.54
LSM2-213ENST00000491421 KCNH5Q8NCM2 988 aa11.67□□□□□ -0.54
LSM2-213ENST00000491421 PDE3BQ13370 1112 aa11.66□□□□□ -0.54
LSM2-213ENST00000491421 HDGFL2Q7Z4V5 671 aaPredicted RBP11.66□□□□□ -0.54
LSM2-213ENST00000491421 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.66□□□□□ -0.54
LSM2-213ENST00000491421 THRAP3Q9Y2W1 955 aaKnown RBP11.66□□□□□ -0.54
LSM2-213ENST00000491421 CRB1P82279 1406 aa11.66□□□□□ -0.54
LSM2-213ENST00000491421 ST20-MTHFSA0A0A6YYL1 179 aa11.65□□□□□ -0.54
LSM2-213ENST00000491421 FAM196AQ6ZSG2 479 aa11.65□□□□□ -0.54
LSM2-213ENST00000491421 ARHGEF25Q86VW2 580 aa11.65□□□□□ -0.54
LSM2-213ENST00000491421 PUS7Q96PZ0 661 aaKnown RBP11.65□□□□□ -0.54
LSM2-213ENST00000491421 SLC12A5Q9H2X9 1139 aa11.65□□□□□ -0.54
LSM2-213ENST00000491421 TERF2IPQ9NYB0 399 aa11.65□□□□□ -0.54
LSM2-213ENST00000491421 AKAP12Q02952 1782 aa11.64□□□□□ -0.55
LSM2-213ENST00000491421 CD163L1Q9NR16 1453 aa11.64□□□□□ -0.55
LSM2-213ENST00000491421 TOM1L2Q6ZVM7 507 aa11.64□□□□□ -0.55
LSM2-213ENST00000491421 TESK2Q96S53 571 aa11.64□□□□□ -0.55
LSM2-213ENST00000491421 AXIN2Q9Y2T1 843 aa11.64□□□□□ -0.55
LSM2-213ENST00000491421 EDC4Q6P2E9 1401 aaKnown RBP11.63□□□□□ -0.55
LSM2-213ENST00000491421 TRIM37O94972 964 aa11.63□□□□□ -0.55
LSM2-213ENST00000491421 EN1Q05925 392 aaPredicted RBP11.63□□□□□ -0.55
LSM2-213ENST00000491421 NME9Q86XW9 330 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms