RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 FAM83GA6ND36 823 aa19.75■□□□□ 0.75
COL6A3-211ENST00000491233 PAK3O75914 559 aaPredicted RBP19.75■□□□□ 0.75
COL6A3-211ENST00000491233 CDK19Q9BWU1 502 aa19.75■□□□□ 0.75
COL6A3-211ENST00000491233 CCDC9Q9Y3X0 531 aaKnown RBP19.75■□□□□ 0.75
COL6A3-211ENST00000491233 POLR3AO14802 1390 aaPredicted RBP19.72■□□□□ 0.75
COL6A3-211ENST00000491233 SEPT12Q8IYM1 358 aa19.71■□□□□ 0.75
COL6A3-211ENST00000491233 CENPJQ9HC77 1338 aaPredicted RBP19.71■□□□□ 0.75
COL6A3-211ENST00000491233 EP400Q96L91 3159 aa19.71■□□□□ 0.75
COL6A3-211ENST00000491233 NRKQ7Z2Y5 1582 aa19.7■□□□□ 0.74
COL6A3-211ENST00000491233 BTG4Q9NY30 223 aa19.7■□□□□ 0.74
COL6A3-211ENST00000491233 CCDC125Q86Z20 511 aa19.69■□□□□ 0.74
COL6A3-211ENST00000491233 L3MBTL2Q969R5 705 aa19.69■□□□□ 0.74
COL6A3-211ENST00000491233 CCDC61Q9Y6R9 512 aa19.69■□□□□ 0.74
COL6A3-211ENST00000491233 ACEP12821 1306 aa19.69■□□□□ 0.74
COL6A3-211ENST00000491233 BLMP54132 1417 aaPredicted RBP19.68■□□□□ 0.74
COL6A3-211ENST00000491233 SIN3AQ96ST3 1273 aa19.68■□□□□ 0.74
COL6A3-211ENST00000491233 PRDM11Q9NQV5 511 aa19.68■□□□□ 0.74
COL6A3-211ENST00000491233 PPIP5K1Q6PFW1 1433 aa19.68■□□□□ 0.74
COL6A3-211ENST00000491233 THSD7AQ9UPZ6 1657 aa19.67■□□□□ 0.74
COL6A3-211ENST00000491233 KIAA0232Q92628 1395 aa19.67■□□□□ 0.74
COL6A3-211ENST00000491233 A0A0G2JS52 829 aa19.66■□□□□ 0.74
COL6A3-211ENST00000491233 PLEKHG3A1L390 1219 aa19.66■□□□□ 0.74
COL6A3-211ENST00000491233 ONECUT3O60422 494 aaPredicted RBP19.66■□□□□ 0.74
COL6A3-211ENST00000491233 SRPK2P78362 688 aaKnown RBP19.66■□□□□ 0.74
COL6A3-211ENST00000491233 MYT1Q01538 1121 aa19.66■□□□□ 0.74
COL6A3-211ENST00000491233 NBPF8Q3BBV2 869 aa19.65■□□□□ 0.74
COL6A3-211ENST00000491233 NUTM2GQ5VZR2 741 aa19.65■□□□□ 0.74
COL6A3-211ENST00000491233 FAM98CQ17RN3 349 aaKnown RBP19.64■□□□□ 0.73
COL6A3-211ENST00000491233 KRT27Q7Z3Y8 459 aa19.64■□□□□ 0.73
COL6A3-211ENST00000491233 CABP2Q9NPB3 220 aa19.64■□□□□ 0.73
COL6A3-211ENST00000491233 LMO7Q8WWI1 1683 aa19.62■□□□□ 0.73
COL6A3-211ENST00000491233 SPATA31A5Q5VU36 1347 aa19.62■□□□□ 0.73
COL6A3-211ENST00000491233 SPATA31A7Q8IWB4 1347 aa19.62■□□□□ 0.73
COL6A3-211ENST00000491233 NEUROD1Q13562 356 aa19.62■□□□□ 0.73
COL6A3-211ENST00000491233 CHRNA2Q15822 529 aa19.62■□□□□ 0.73
COL6A3-211ENST00000491233 RGPD1P0DJD0 1748 aa19.62■□□□□ 0.73
COL6A3-211ENST00000491233 ROCK2O75116 1388 aaKnown RBP19.61■□□□□ 0.73
COL6A3-211ENST00000491233 USP19O94966 1318 aa19.6■□□□□ 0.73
COL6A3-211ENST00000491233 ZC3H6P61129 1189 aaKnown RBP19.6■□□□□ 0.73
COL6A3-211ENST00000491233 ABTB2Q8N961 1025 aa19.6■□□□□ 0.73
COL6A3-211ENST00000491233 AKAP12Q02952 1782 aa19.6■□□□□ 0.73
COL6A3-211ENST00000491233 DEFB132Q7Z7B7 95 aa19.59■□□□□ 0.73
COL6A3-211ENST00000491233 ZRANB1Q9UGI0 708 aa19.59■□□□□ 0.73
COL6A3-211ENST00000491233 USP6P35125 1406 aa19.59■□□□□ 0.73
COL6A3-211ENST00000491233 PIK3C2AO00443 1686 aa19.59■□□□□ 0.73
COL6A3-211ENST00000491233 SF3B2Q13435 895 aaKnown RBP19.58■□□□□ 0.72
COL6A3-211ENST00000491233 STRN4Q9NRL3 753 aa19.58■□□□□ 0.72
COL6A3-211ENST00000491233 TNS1Q9HBL0 1735 aaKnown RBP19.58■□□□□ 0.72
COL6A3-211ENST00000491233 CAMTA1Q9Y6Y1 1673 aa19.58■□□□□ 0.72
COL6A3-211ENST00000491233 SSH2Q76I76 1423 aa19.57■□□□□ 0.72
COL6A3-211ENST00000491233 BRD4O60885 1362 aaPredicted RBP19.57■□□□□ 0.72
COL6A3-211ENST00000491233 CPDO75976 1380 aa19.57■□□□□ 0.72
COL6A3-211ENST00000491233 SPATA31A1Q5TZJ5 1347 aa19.56■□□□□ 0.72
COL6A3-211ENST00000491233 EVC2Q86UK5 1308 aa19.56■□□□□ 0.72
COL6A3-211ENST00000491233 SLIT3O75094 1523 aa19.56■□□□□ 0.72
COL6A3-211ENST00000491233 CABP1Q9NZU7 370 aa19.55■□□□□ 0.72
COL6A3-211ENST00000491233 NLRP13Q86W25 1043 aa19.54■□□□□ 0.72
COL6A3-211ENST00000491233 FAM182BQ5T319 152 aa19.53■□□□□ 0.72
COL6A3-211ENST00000491233 MON2Q7Z3U7 1717 aa19.52■□□□□ 0.72
COL6A3-211ENST00000491233 COL5A2P05997 1499 aaPredicted RBP19.51■□□□□ 0.71
COL6A3-211ENST00000491233 GCP02774 474 aa19.5■□□□□ 0.71
COL6A3-211ENST00000491233 BAG6P46379 1132 aa19.5■□□□□ 0.71
COL6A3-211ENST00000491233 EVA1CP58658 441 aa19.5■□□□□ 0.71
COL6A3-211ENST00000491233 USP35Q9P2H5 1018 aa19.5■□□□□ 0.71
COL6A3-211ENST00000491233 WNK3Q9BYP7 1800 aa19.49■□□□□ 0.71
COL6A3-211ENST00000491233 PARP4Q9UKK3 1724 aaKnown RBP19.49■□□□□ 0.71
COL6A3-211ENST00000491233 NLRP6P59044 892 aa19.49■□□□□ 0.71
COL6A3-211ENST00000491233 LARP1Q6PKG0 1096 aaKnown RBP19.49■□□□□ 0.71
COL6A3-211ENST00000491233 COL18A1P39060 1754 aa19.49■□□□□ 0.71
COL6A3-211ENST00000491233 TONSLQ96HA7 1378 aa19.47■□□□□ 0.71
COL6A3-211ENST00000491233 SBNO2Q9Y2G9 1366 aa19.47■□□□□ 0.71
COL6A3-211ENST00000491233 ZBTB7CA1YPR0 619 aa19.47■□□□□ 0.71
COL6A3-211ENST00000491233 DISP2A7MBM2 1401 aa19.46■□□□□ 0.71
COL6A3-211ENST00000491233 BARGINQ6ZT62 677 aa19.46■□□□□ 0.71
COL6A3-211ENST00000491233 RGPD5Q99666 1765 aa19.46■□□□□ 0.71
COL6A3-211ENST00000491233 CPSF1Q10570 1443 aaKnown RBP19.45■□□□□ 0.7
COL6A3-211ENST00000491233 LRRC37A3O60309 1634 aa19.45■□□□□ 0.7
COL6A3-211ENST00000491233 TCP11L2Q8N4U5 519 aa19.45■□□□□ 0.7
COL6A3-211ENST00000491233 AATKQ6ZMQ8 1374 aa19.44■□□□□ 0.7
COL6A3-211ENST00000491233 LRP5O75197 1615 aa19.44■□□□□ 0.7
COL6A3-211ENST00000491233 CRB1P82279 1406 aa19.44■□□□□ 0.7
COL6A3-211ENST00000491233 CARD11Q9BXL7 1154 aa19.44■□□□□ 0.7
COL6A3-211ENST00000491233 TTC21BQ7Z4L5 1316 aa19.44■□□□□ 0.7
COL6A3-211ENST00000491233 USP54Q70EL1 1684 aa19.43■□□□□ 0.7
COL6A3-211ENST00000491233 EN1Q05925 392 aaPredicted RBP19.43■□□□□ 0.7
COL6A3-211ENST00000491233 NFAT5O94916 1531 aa19.42■□□□□ 0.7
COL6A3-211ENST00000491233 FAM196AQ6ZSG2 479 aa19.42■□□□□ 0.7
COL6A3-211ENST00000491233 ZNF692Q9BU19 519 aaPredicted RBP19.42■□□□□ 0.7
COL6A3-211ENST00000491233 TTC21AQ8NDW8 1320 aa19.42■□□□□ 0.7
COL6A3-211ENST00000491233 KTN1Q86UP2 1357 aaKnown RBP19.42■□□□□ 0.7
COL6A3-211ENST00000491233 RREB1Q92766 1687 aa19.41■□□□□ 0.7
COL6A3-211ENST00000491233 THRAP3Q9Y2W1 955 aaKnown RBP19.41■□□□□ 0.7
COL6A3-211ENST00000491233 TRIM37O94972 964 aa19.4■□□□□ 0.7
COL6A3-211ENST00000491233 PDE3BQ13370 1112 aa19.4■□□□□ 0.7
COL6A3-211ENST00000491233 CD163L1Q9NR16 1453 aa19.4■□□□□ 0.7
COL6A3-211ENST00000491233 PEAK1Q9H792 1746 aa19.39■□□□□ 0.7
COL6A3-211ENST00000491233 PSDA5PKW4 1024 aaPredicted RBP19.39■□□□□ 0.69
COL6A3-211ENST00000491233 NUP188Q5SRE5 1749 aa19.39■□□□□ 0.69
COL6A3-211ENST00000491233 LTN1O94822 1766 aa19.39■□□□□ 0.69
COL6A3-211ENST00000491233 SOX12O15370 315 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms