RNA–Protein interactions for RNA: ENST00000490283.1

SEC13-218, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 2

Gene SEC13, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-218ENST00000490283 SLIT2O94813 1529 aa24.82■■□□□ 1.56
SEC13-218ENST00000490283 TOPAZ1Q8N9V7 1692 aa24.82■■□□□ 1.56
SEC13-218ENST00000490283 CARD11Q9BXL7 1154 aa24.82■■□□□ 1.56
SEC13-218ENST00000490283 ALS2Q96Q42 1657 aa24.81■■□□□ 1.56
SEC13-218ENST00000490283 GJD4Q96KN9 370 aaPredicted RBP24.81■■□□□ 1.56
SEC13-218ENST00000490283 ABCA3Q99758 1704 aa24.79■■□□□ 1.56
SEC13-218ENST00000490283 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.78■■□□□ 1.56
SEC13-218ENST00000490283 RALGAPBQ86X10 1494 aa24.77■■□□□ 1.56
SEC13-218ENST00000490283 CCDC9Q9Y3X0 531 aaKnown RBP24.77■■□□□ 1.56
SEC13-218ENST00000490283 FAM83GA6ND36 823 aa24.76■■□□□ 1.55
SEC13-218ENST00000490283 UPF1Q92900 1129 aaKnown RBP eCLIP24.76■■□□□ 1.55
SEC13-218ENST00000490283 CABP1Q9NZU7 370 aa24.76■■□□□ 1.55
SEC13-218ENST00000490283 ABTB2Q8N961 1025 aa24.75■■□□□ 1.55
SEC13-218ENST00000490283 BRD4O60885 1362 aaPredicted RBP24.75■■□□□ 1.55
SEC13-218ENST00000490283 VPS72Q15906 364 aa24.74■■□□□ 1.55
SEC13-218ENST00000490283 PRDM11Q9NQV5 511 aa24.74■■□□□ 1.55
SEC13-218ENST00000490283 ATAD2Q6PL18 1390 aa24.73■■□□□ 1.55
SEC13-218ENST00000490283 NUTM2GQ5VZR2 741 aa24.73■■□□□ 1.55
SEC13-218ENST00000490283 NWD2Q9ULI1 1742 aa24.72■■□□□ 1.55
SEC13-218ENST00000490283 PLCH1Q4KWH8 1693 aa24.72■■□□□ 1.55
SEC13-218ENST00000490283 BTG4Q9NY30 223 aa24.72■■□□□ 1.55
SEC13-218ENST00000490283 SBNO2Q9Y2G9 1366 aa24.71■■□□□ 1.55
SEC13-218ENST00000490283 NLRP13Q86W25 1043 aa24.7■■□□□ 1.54
SEC13-218ENST00000490283 COL14A1Q05707 1796 aaKnown RBP24.7■■□□□ 1.54
SEC13-218ENST00000490283 PCGF6Q9BYE7 350 aa24.69■■□□□ 1.54
SEC13-218ENST00000490283 USP6P35125 1406 aa24.69■■□□□ 1.54
SEC13-218ENST00000490283 ZNF692Q9BU19 519 aaPredicted RBP24.67■■□□□ 1.54
SEC13-218ENST00000490283 KIAA0232Q92628 1395 aa24.67■■□□□ 1.54
SEC13-218ENST00000490283 ZC3H6P61129 1189 aaKnown RBP24.66■■□□□ 1.54
SEC13-218ENST00000490283 GLI3P10071 1580 aa24.66■■□□□ 1.54
SEC13-218ENST00000490283 CRYBG1Q9Y4K1 1723 aa24.66■■□□□ 1.54
SEC13-218ENST00000490283 CLSPNQ9HAW4 1339 aa24.65■■□□□ 1.54
SEC13-218ENST00000490283 PHRF1Q9P1Y6 1649 aaKnown RBP24.64■■□□□ 1.54
SEC13-218ENST00000490283 A0A0G2JS52 829 aa24.64■■□□□ 1.54
SEC13-218ENST00000490283 MYT1Q01538 1121 aa24.64■■□□□ 1.54
SEC13-218ENST00000490283 USP19O94966 1318 aa24.63■■□□□ 1.53
SEC13-218ENST00000490283 NLRP6P59044 892 aa24.63■■□□□ 1.53
SEC13-218ENST00000490283 SLC24A1O60721 1099 aa24.62■■□□□ 1.53
SEC13-218ENST00000490283 CHRNA2Q15822 529 aa24.62■■□□□ 1.53
SEC13-218ENST00000490283 SEPT12Q8IYM1 358 aa24.62■■□□□ 1.53
SEC13-218ENST00000490283 TIMELESSQ9UNS1 1208 aa24.61■■□□□ 1.53
SEC13-218ENST00000490283 GCP02774 474 aa24.6■■□□□ 1.53
SEC13-218ENST00000490283 NRAPQ86VF7 1730 aa24.6■■□□□ 1.53
SEC13-218ENST00000490283 NRKQ7Z2Y5 1582 aa24.59■■□□□ 1.53
SEC13-218ENST00000490283 CPDO75976 1380 aa24.59■■□□□ 1.53
SEC13-218ENST00000490283 TMC1Q8TDI8 760 aa24.59■■□□□ 1.53
SEC13-218ENST00000490283 STRN4Q9NRL3 753 aa24.59■■□□□ 1.53
SEC13-218ENST00000490283 KTN1Q86UP2 1357 aaKnown RBP24.58■■□□□ 1.53
SEC13-218ENST00000490283 ONECUT3O60422 494 aaPredicted RBP24.58■■□□□ 1.53
SEC13-218ENST00000490283 EVA1CP58658 441 aa24.58■■□□□ 1.53
SEC13-218ENST00000490283 TTC21AQ8NDW8 1320 aa24.58■■□□□ 1.52
SEC13-218ENST00000490283 FAM98CQ17RN3 349 aaKnown RBP24.57■■□□□ 1.52
SEC13-218ENST00000490283 SPATA31A5Q5VU36 1347 aa24.57■■□□□ 1.52
SEC13-218ENST00000490283 TTC21BQ7Z4L5 1316 aa24.57■■□□□ 1.52
SEC13-218ENST00000490283 SPATA31A7Q8IWB4 1347 aa24.57■■□□□ 1.52
SEC13-218ENST00000490283 SSH2Q76I76 1423 aa24.56■■□□□ 1.52
SEC13-218ENST00000490283 ST20-MTHFSA0A0A6YYL1 179 aa24.56■■□□□ 1.52
SEC13-218ENST00000490283 HDGFL2Q7Z4V5 671 aaPredicted RBP24.56■■□□□ 1.52
SEC13-218ENST00000490283 CPSF1Q10570 1443 aaKnown RBP24.55■■□□□ 1.52
SEC13-218ENST00000490283 ZBTB7CA1YPR0 619 aa24.55■■□□□ 1.52
SEC13-218ENST00000490283 CCDC125Q86Z20 511 aa24.55■■□□□ 1.52
SEC13-218ENST00000490283 PUS7Q96PZ0 661 aaKnown RBP24.55■■□□□ 1.52
SEC13-218ENST00000490283 KRT27Q7Z3Y8 459 aa24.54■■□□□ 1.52
SEC13-218ENST00000490283 TERF2IPQ9NYB0 399 aa24.53■■□□□ 1.52
SEC13-218ENST00000490283 KCNH5Q8NCM2 988 aa24.52■■□□□ 1.52
SEC13-218ENST00000490283 CCER1Q8TC90 406 aaPredicted RBP24.51■■□□□ 1.51
SEC13-218ENST00000490283 SPATA31A1Q5TZJ5 1347 aa24.51■■□□□ 1.51
SEC13-218ENST00000490283 AKAP12Q02952 1782 aa24.51■■□□□ 1.51
SEC13-218ENST00000490283 USP47Q96K76 1375 aa24.51■■□□□ 1.51
SEC13-218ENST00000490283 SLIT3O75094 1523 aa24.51■■□□□ 1.51
SEC13-218ENST00000490283 TESK2Q96S53 571 aa24.5■■□□□ 1.51
SEC13-218ENST00000490283 PIK3C2AO00443 1686 aa24.5■■□□□ 1.51
SEC13-218ENST00000490283 SF3B2Q13435 895 aaKnown RBP24.49■■□□□ 1.51
SEC13-218ENST00000490283 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.49■■□□□ 1.51
SEC13-218ENST00000490283 SLC12A5Q9H2X9 1139 aa24.49■■□□□ 1.51
SEC13-218ENST00000490283 NINLQ9Y2I6 1382 aa24.49■■□□□ 1.51
SEC13-218ENST00000490283 USP35Q9P2H5 1018 aa24.48■■□□□ 1.51
SEC13-218ENST00000490283 CAMTA1Q9Y6Y1 1673 aa24.47■■□□□ 1.51
SEC13-218ENST00000490283 BLMP54132 1417 aaPredicted RBP24.47■■□□□ 1.51
SEC13-218ENST00000490283 AATKQ6ZMQ8 1374 aa24.47■■□□□ 1.51
SEC13-218ENST00000490283 TMF1P82094 1093 aa24.47■■□□□ 1.51
SEC13-218ENST00000490283 SOX12O15370 315 aa24.46■■□□□ 1.51
SEC13-218ENST00000490283 BRWD3Q6RI45 1802 aa24.45■■□□□ 1.5
SEC13-218ENST00000490283 MON2Q7Z3U7 1717 aa24.45■■□□□ 1.5
SEC13-218ENST00000490283 LARP1Q6PKG0 1096 aaKnown RBP24.45■■□□□ 1.5
SEC13-218ENST00000490283 LMO7Q8WWI1 1683 aa24.45■■□□□ 1.5
SEC13-218ENST00000490283 EDC4Q6P2E9 1401 aaKnown RBP24.44■■□□□ 1.5
SEC13-218ENST00000490283 CD163L1Q9NR16 1453 aa24.44■■□□□ 1.5
SEC13-218ENST00000490283 CDCA8Q53HL2 280 aa24.43■■□□□ 1.5
SEC13-218ENST00000490283 BARGINQ6ZT62 677 aa24.43■■□□□ 1.5
SEC13-218ENST00000490283 TCP11L2Q8N4U5 519 aa24.43■■□□□ 1.5
SEC13-218ENST00000490283 COL5A2P05997 1499 aaPredicted RBP24.43■■□□□ 1.5
SEC13-218ENST00000490283 A0A1W2PP64 1363 aa24.42■■□□□ 1.5
SEC13-218ENST00000490283 THRAP3Q9Y2W1 955 aaKnown RBP24.42■■□□□ 1.5
SEC13-218ENST00000490283 USP31Q70CQ4 1352 aa24.42■■□□□ 1.5
SEC13-218ENST00000490283 ARHGEF25Q86VW2 580 aa24.41■■□□□ 1.5
SEC13-218ENST00000490283 NME9Q86XW9 330 aa24.41■■□□□ 1.5
SEC13-218ENST00000490283 THSD7AQ9UPZ6 1657 aa24.4■■□□□ 1.5
SEC13-218ENST00000490283 CRB1P82279 1406 aa24.4■■□□□ 1.5
SEC13-218ENST00000490283 PDE3BQ13370 1112 aa24.38■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms