RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 PPM1FP49593 454 aaPredicted RBP8.63□□□□□ -1.03
SYNE1-228ENST00000490135 KRBA2Q6ZNG9 492 aa8.63□□□□□ -1.03
SYNE1-228ENST00000490135 EID1Q9Y6B2 187 aa8.63□□□□□ -1.03
SYNE1-228ENST00000490135 FAM177BA6PVY3 158 aa8.63□□□□□ -1.03
SYNE1-228ENST00000490135 SETSIPP0DME0 302 aa8.63□□□□□ -1.03
SYNE1-228ENST00000490135 OLFM4Q6UX06 510 aa8.63□□□□□ -1.03
SYNE1-228ENST00000490135 SPC24Q8NBT2 197 aa8.63□□□□□ -1.03
SYNE1-228ENST00000490135 INCENPQ9NQS7 918 aa8.63□□□□□ -1.03
SYNE1-228ENST00000490135 TERF2IPQ9NYB0 399 aa8.63□□□□□ -1.03
SYNE1-228ENST00000490135 VGFO15240 615 aaPredicted RBP8.62□□□□□ -1.03
SYNE1-228ENST00000490135 ENOX2Q16206 610 aaKnown RBP8.62□□□□□ -1.03
SYNE1-228ENST00000490135 ZNF853P0CG23 659 aa8.62□□□□□ -1.03
SYNE1-228ENST00000490135 TTC5Q8N0Z6 440 aa8.62□□□□□ -1.03
SYNE1-228ENST00000490135 TMCO5BA8MYB1 307 aa8.62□□□□□ -1.03
SYNE1-228ENST00000490135 KIAA0754O94854 1291 aa8.62□□□□□ -1.03
SYNE1-228ENST00000490135 IKQ13123 557 aaPredicted RBP8.62□□□□□ -1.03
SYNE1-228ENST00000490135 CCNB3Q8WWL7 1395 aa8.62□□□□□ -1.03
SYNE1-228ENST00000490135 ZCCHC6Q5VYS8 1495 aaKnown RBP8.62□□□□□ -1.03
SYNE1-228ENST00000490135 PRPF40AO75400 957 aaKnown RBP8.62□□□□□ -1.03
SYNE1-228ENST00000490135 NEBLO76041 1014 aa8.62□□□□□ -1.03
SYNE1-228ENST00000490135 MAP2K2P36507 400 aa8.62□□□□□ -1.03
SYNE1-228ENST00000490135 RGS22Q8NE09 1264 aa8.62□□□□□ -1.03
SYNE1-228ENST00000490135 GGT6Q6P531 493 aa8.61□□□□□ -1.03
SYNE1-228ENST00000490135 IBSPP21815 317 aaPredicted RBP8.61□□□□□ -1.03
SYNE1-228ENST00000490135 BMS1Q14692 1282 aaKnown RBP8.61□□□□□ -1.03
SYNE1-228ENST00000490135 CCDC73Q6ZRK6 1079 aa8.61□□□□□ -1.03
SYNE1-228ENST00000490135 FAM107BQ9H098 131 aa8.61□□□□□ -1.03
SYNE1-228ENST00000490135 RABEP1Q15276 862 aa8.61□□□□□ -1.03
SYNE1-228ENST00000490135 PDILTQ8N807 584 aa8.61□□□□□ -1.03
SYNE1-228ENST00000490135 NOL7Q9UMY1 257 aaKnown RBP8.61□□□□□ -1.03
SYNE1-228ENST00000490135 IVLP07476 585 aa8.61□□□□□ -1.03
SYNE1-228ENST00000490135 PHF23Q9BUL5 403 aaPredicted RBP8.61□□□□□ -1.03
SYNE1-228ENST00000490135 EIF3AQ14152 1382 aaKnown RBP8.61□□□□□ -1.03
SYNE1-228ENST00000490135 CCDC172P0C7W6 258 aa8.6□□□□□ -1.03
SYNE1-228ENST00000490135 XBP1P17861 261 aa8.6□□□□□ -1.03
SYNE1-228ENST00000490135 TMCO3Q6UWJ1 677 aa8.6□□□□□ -1.03
SYNE1-228ENST00000490135 CEP83Q9Y592 693 aa8.6□□□□□ -1.03
SYNE1-228ENST00000490135 CLUAP1Q96AJ1 413 aa8.6□□□□□ -1.03
SYNE1-228ENST00000490135 CNTLNQ9NXG0 1405 aa8.6□□□□□ -1.03
SYNE1-228ENST00000490135 GOLGA6L10A6NI86 522 aa8.6□□□□□ -1.03
SYNE1-228ENST00000490135 PIK3R5Q8WYR1 880 aa8.6□□□□□ -1.03
SYNE1-228ENST00000490135 CENPHQ9H3R5 247 aa8.6□□□□□ -1.03
SYNE1-228ENST00000490135 LRRFIP2Q9Y608 721 aaKnown RBP8.6□□□□□ -1.03
SYNE1-228ENST00000490135 NOLC1Q14978 699 aaKnown RBP eCLIP8.6□□□□□ -1.03
SYNE1-228ENST00000490135 NAT10Q9H0A0 1025 aaKnown RBP8.6□□□□□ -1.03
SYNE1-228ENST00000490135 CCP110O43303 1012 aa8.59□□□□□ -1.03
SYNE1-228ENST00000490135 IFIT2P09913 472 aaKnown RBP8.59□□□□□ -1.03
SYNE1-228ENST00000490135 LMAN1P49257 510 aa8.59□□□□□ -1.03
SYNE1-228ENST00000490135 HSP90AB4PQ58FF6 505 aa8.59□□□□□ -1.03
SYNE1-228ENST00000490135 GEMIN8Q9NWZ8 242 aaKnown RBP8.59□□□□□ -1.03
SYNE1-228ENST00000490135 DESP17661 470 aa8.59□□□□□ -1.03
SYNE1-228ENST00000490135 SMARCE1Q969G3 411 aa8.59□□□□□ -1.03
SYNE1-228ENST00000490135 CDK5RAP3Q96JB5 506 aa8.59□□□□□ -1.03
SYNE1-228ENST00000490135 RB1CC1Q8TDY2 1594 aa8.59□□□□□ -1.03
SYNE1-228ENST00000490135 MBD3O95983 291 aa8.59□□□□□ -1.03
SYNE1-228ENST00000490135 ATP6V1AP38606 617 aa8.59□□□□□ -1.03
SYNE1-228ENST00000490135 DYDC1Q8WWB3 177 aa8.59□□□□□ -1.03
SYNE1-228ENST00000490135 MAGEC2Q9UBF1 373 aaPredicted RBP8.59□□□□□ -1.03
SYNE1-228ENST00000490135 CIZ1Q9ULV3 898 aaPredicted RBP8.59□□□□□ -1.03
SYNE1-228ENST00000490135 CLASRPQ8N2M8 674 aaKnown RBP8.59□□□□□ -1.04
SYNE1-228ENST00000490135 YY1AP1Q9H869 796 aa8.59□□□□□ -1.04
SYNE1-228ENST00000490135 C9orf78Q9NZ63 289 aaPredicted RBP8.59□□□□□ -1.04
SYNE1-228ENST00000490135 CT47B1P0C2W7 299 aaPredicted RBP8.58□□□□□ -1.04
SYNE1-228ENST00000490135 GBP6Q6ZN66 633 aa8.58□□□□□ -1.04
SYNE1-228ENST00000490135 NGEFQ8N5V2 710 aa8.58□□□□□ -1.04
SYNE1-228ENST00000490135 SKAP1Q86WV1 359 aa8.58□□□□□ -1.04
SYNE1-228ENST00000490135 KRT18P05783 430 aaKnown RBP8.58□□□□□ -1.04
SYNE1-228ENST00000490135 GBP2P32456 591 aaPredicted RBP8.58□□□□□ -1.04
SYNE1-228ENST00000490135 AP1ARQ63HQ0 302 aa8.58□□□□□ -1.04
SYNE1-228ENST00000490135 NACADO15069 1562 aa8.58□□□□□ -1.04
SYNE1-228ENST00000490135 CGNL1Q0VF96 1302 aa8.57□□□□□ -1.04
SYNE1-228ENST00000490135 EIF3JO75822 258 aaKnown RBP8.57□□□□□ -1.04
SYNE1-228ENST00000490135 REC8O95072 547 aa8.57□□□□□ -1.04
SYNE1-228ENST00000490135 ANKRD45Q5TZF3 282 aa8.57□□□□□ -1.04
SYNE1-228ENST00000490135 MICALL1Q8N3F8 863 aa8.57□□□□□ -1.04
SYNE1-228ENST00000490135 ERCC6Q03468 1493 aa8.57□□□□□ -1.04
SYNE1-228ENST00000490135 SYCE3A1L190 88 aa8.57□□□□□ -1.04
SYNE1-228ENST00000490135 KIF1CO43896 1103 aaKnown RBP8.57□□□□□ -1.04
SYNE1-228ENST00000490135 PPP2R5AQ15172 486 aa8.57□□□□□ -1.04
SYNE1-228ENST00000490135 ZNF397Q8NF99 534 aaPredicted RBP8.57□□□□□ -1.04
SYNE1-228ENST00000490135 FYB1O15117 783 aa8.57□□□□□ -1.04
SYNE1-228ENST00000490135 RIPK4P57078 832 aa8.57□□□□□ -1.04
SYNE1-228ENST00000490135 TEFQ10587 303 aa8.57□□□□□ -1.04
SYNE1-228ENST00000490135 RALYLQ86SE5 291 aaKnown RBP8.57□□□□□ -1.04
SYNE1-228ENST00000490135 CEP120Q8N960 986 aa8.57□□□□□ -1.04
SYNE1-228ENST00000490135 TNPO1Q92973 898 aaKnown RBP8.57□□□□□ -1.04
SYNE1-228ENST00000490135 VPS37CA5D8V6 355 aaPredicted RBP8.57□□□□□ -1.04
SYNE1-228ENST00000490135 BIRC2Q13490 618 aa8.57□□□□□ -1.04
SYNE1-228ENST00000490135 FILIP1LQ4L180 1135 aa8.57□□□□□ -1.04
SYNE1-228ENST00000490135 TBC1D2Q9BYX2 928 aa8.57□□□□□ -1.04
SYNE1-228ENST00000490135 CEP164Q9UPV0 1460 aa8.56□□□□□ -1.04
SYNE1-228ENST00000490135 FOSBP53539 338 aa8.56□□□□□ -1.04
SYNE1-228ENST00000490135 CCDC27Q2M243 656 aa8.56□□□□□ -1.04
SYNE1-228ENST00000490135 SYTL4Q96C24 671 aaPredicted RBP8.56□□□□□ -1.04
SYNE1-228ENST00000490135 KIAA1328Q86T90 577 aa8.56□□□□□ -1.04
SYNE1-228ENST00000490135 SMC3Q9UQE7 1217 aa8.56□□□□□ -1.04
SYNE1-228ENST00000490135 DDX58O95786 925 aaKnown RBP8.56□□□□□ -1.04
SYNE1-228ENST00000490135 GRIPAP1Q4V328 841 aa8.56□□□□□ -1.04
SYNE1-228ENST00000490135 KIF2AO00139 706 aaPredicted RBP8.55□□□□□ -1.04
SYNE1-228ENST00000490135 SATB1Q01826 763 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms