RNA–Protein interactions for RNA: ENST00000489417.5

SND1-214, Transcript of staphylococcal nuclease and tudor domain containing 1, humanhuman

TSL 2

Gene SND1, Length 1,447 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-214ENST00000489417 CADPS2Q86UW7 1296 aa28.23■■■□□ 2.11
SND1-214ENST00000489417 MST1RQ04912 1400 aa28.23■■■□□ 2.11
SND1-214ENST00000489417 ESCO1Q5FWF5 840 aa28.22■■■□□ 2.11
SND1-214ENST00000489417 TTC21BQ7Z4L5 1316 aa28.21■■■□□ 2.11
SND1-214ENST00000489417 SSH2Q76I76 1423 aa28.21■■■□□ 2.11
SND1-214ENST00000489417 NME9Q86XW9 330 aa28.18■■■□□ 2.1
SND1-214ENST00000489417 YTHDC1Q96MU7 727 aaKnown RBP28.18■■■□□ 2.1
SND1-214ENST00000489417 KIF1AQ12756 1690 aa28.18■■■□□ 2.1
SND1-214ENST00000489417 ORAI2Q96SN7 254 aa28.18■■■□□ 2.1
SND1-214ENST00000489417 TTC21AQ8NDW8 1320 aa28.17■■■□□ 2.1
SND1-214ENST00000489417 TNNT2P45379 298 aaPredicted RBP28.15■■■□□ 2.1
SND1-214ENST00000489417 LTBP4Q8N2S1 1624 aa28.13■■■□□ 2.09
SND1-214ENST00000489417 COG3Q96JB2 828 aa28.11■■■□□ 2.09
SND1-214ENST00000489417 ZRANB1Q9UGI0 708 aa28.11■■■□□ 2.09
SND1-214ENST00000489417 FAM9BQ8IZU0 186 aa28.1■■■□□ 2.09
SND1-214ENST00000489417 PNISRQ8TF01 805 aaKnown RBP28.1■■■□□ 2.09
SND1-214ENST00000489417 PSME1Q06323 249 aa28.09■■■□□ 2.09
SND1-214ENST00000489417 SCAF1Q9H7N4 1312 aaKnown RBP28.09■■■□□ 2.09
SND1-214ENST00000489417 OVOS2A0A0J9YW53 1432 aa28.09■■■□□ 2.09
SND1-214ENST00000489417 OVOS2Q6IE36 1432 aa28.09■■■□□ 2.09
SND1-214ENST00000489417 PIK3C2AO00443 1686 aa28.07■■■□□ 2.08
SND1-214ENST00000489417 FOXO3O43524 673 aa28.07■■■□□ 2.08
SND1-214ENST00000489417 USP31Q70CQ4 1352 aa28.07■■■□□ 2.08
SND1-214ENST00000489417 MTHFSP49914 203 aa28.04■■■□□ 2.08
SND1-214ENST00000489417 PAK3O75914 559 aaPredicted RBP28.03■■■□□ 2.08
SND1-214ENST00000489417 AATKQ6ZMQ8 1374 aa28.03■■■□□ 2.08
SND1-214ENST00000489417 USP54Q70EL1 1684 aa28.03■■■□□ 2.08
SND1-214ENST00000489417 SLAIN2Q9P270 581 aa28.02■■■□□ 2.08
SND1-214ENST00000489417 KRT28Q7Z3Y7 464 aa28.01■■■□□ 2.08
SND1-214ENST00000489417 TRPM3Q9HCF6 1732 aaPredicted RBP28.01■■■□□ 2.08
SND1-214ENST00000489417 CFAP53Q96M91 514 aa28.01■■■□□ 2.07
SND1-214ENST00000489417 ABTB2Q8N961 1025 aa28■■■□□ 2.07
SND1-214ENST00000489417 NPHP3Q7Z494 1330 aa27.99■■■□□ 2.07
SND1-214ENST00000489417 XPCQ01831 940 aaPredicted RBP27.99■■■□□ 2.07
SND1-214ENST00000489417 BRINP3Q76B58 766 aa27.99■■■□□ 2.07
SND1-214ENST00000489417 NLRP6P59044 892 aa27.98■■■□□ 2.07
SND1-214ENST00000489417 SMG6Q86US8 1419 aaKnown RBP27.97■■■□□ 2.07
SND1-214ENST00000489417 POLKQ9UBT6 870 aa27.97■■■□□ 2.07
SND1-214ENST00000489417 MARF1Q9Y4F3 1742 aaKnown RBP27.96■■■□□ 2.07
SND1-214ENST00000489417 WDR43Q15061 677 aaKnown RBP eCLIP27.96■■■□□ 2.077e-7■□□□□ 8.4
SND1-214ENST00000489417 FBLN1P23142 703 aa27.95■■■□□ 2.07
SND1-214ENST00000489417 NUTM2GQ5VZR2 741 aa27.94■■■□□ 2.06
SND1-214ENST00000489417 SBNO1A3KN83 1393 aa27.93■■■□□ 2.06
SND1-214ENST00000489417 INSRP06213 1382 aa27.93■■■□□ 2.06
SND1-214ENST00000489417 MAP2P11137 1827 aaKnown RBP27.93■■■□□ 2.06
SND1-214ENST00000489417 COL3A1P02461 1466 aaPredicted RBP27.93■■■□□ 2.06
SND1-214ENST00000489417 PXDNQ92626 1479 aa27.93■■■□□ 2.06
SND1-214ENST00000489417 DDX17Q92841 729 aaKnown RBP27.92■■■□□ 2.06
SND1-214ENST00000489417 SHPRHQ149N8 1683 aa27.92■■■□□ 2.06
SND1-214ENST00000489417 PNPLA6Q8IY17 1366 aa27.92■■■□□ 2.06
SND1-214ENST00000489417 HNRNPUQ00839 825 aaKnown RBP eCLIP27.92■■■□□ 2.06
SND1-214ENST00000489417 EMILIN1Q9Y6C2 1016 aa27.92■■■□□ 2.06
SND1-214ENST00000489417 CDK12Q9NYV4 1490 aaPredicted RBP27.9■■■□□ 2.06
SND1-214ENST00000489417 ALS2Q96Q42 1657 aa27.9■■■□□ 2.06
SND1-214ENST00000489417 RRS1Q15050 365 aaKnown RBP27.9■■■□□ 2.06
SND1-214ENST00000489417 ADAMTS8Q9UP79 889 aa27.89■■■□□ 2.06
SND1-214ENST00000489417 PPM1GO15355 546 aaPredicted RBP27.88■■■□□ 2.05
SND1-214ENST00000489417 BLMP54132 1417 aaPredicted RBP27.88■■■□□ 2.05
SND1-214ENST00000489417 SOX12O15370 315 aa27.87■■■□□ 2.05
SND1-214ENST00000489417 CENPBP07199 599 aaPredicted RBP27.87■■■□□ 2.05
SND1-214ENST00000489417 TNS3Q68CZ2 1445 aa27.87■■■□□ 2.05
SND1-214ENST00000489417 LMOD2Q6P5Q4 547 aa27.86■■■□□ 2.05
SND1-214ENST00000489417 NHSL1Q5SYE7 1610 aa27.86■■■□□ 2.05
SND1-214ENST00000489417 SLIT3O75094 1523 aa27.84■■■□□ 2.05
SND1-214ENST00000489417 DIAPH1O60610 1272 aaKnown RBP27.84■■■□□ 2.05
SND1-214ENST00000489417 USP19O94966 1318 aa27.84■■■□□ 2.05
SND1-214ENST00000489417 SOS2Q07890 1332 aaPredicted RBP27.84■■■□□ 2.05
SND1-214ENST00000489417 NUDCQ9Y266 331 aa27.84■■■□□ 2.05
SND1-214ENST00000489417 PEAK1Q9H792 1746 aa27.83■■■□□ 2.05
SND1-214ENST00000489417 NFAT5O94916 1531 aa27.83■■■□□ 2.05
SND1-214ENST00000489417 MAP3K19Q56UN5 1328 aa27.83■■■□□ 2.05
SND1-214ENST00000489417 SPATA31A3Q5VYP0 1347 aa27.83■■■□□ 2.05
SND1-214ENST00000489417 KCNH5Q8NCM2 988 aa27.82■■■□□ 2.04
SND1-214ENST00000489417 ROBO1Q9Y6N7 1651 aa27.81■■■□□ 2.04
SND1-214ENST00000489417 ARHGEF10O15013 1369 aa27.8■■■□□ 2.04
SND1-214ENST00000489417 FLT4P35916 1363 aa27.79■■■□□ 2.04
SND1-214ENST00000489417 KIF24Q5T7B8 1368 aa27.79■■■□□ 2.04
SND1-214ENST00000489417 IQSEC2Q5JU85 1478 aa27.78■■■□□ 2.04
SND1-214ENST00000489417 MED1Q15648 1581 aaPredicted RBP27.77■■■□□ 2.04
SND1-214ENST00000489417 U2SURPO15042 1029 aaKnown RBP27.76■■■□□ 2.04
SND1-214ENST00000489417 U2AF1L5P0DN76 240 aaPredicted RBP27.76■■■□□ 2.04
SND1-214ENST00000489417 U2AF1Q01081 240 aaKnown RBP eCLIP27.76■■■□□ 2.04
SND1-214ENST00000489417 ZBED9Q6R2W3 1325 aa27.76■■■□□ 2.03
SND1-214ENST00000489417 GCP02774 474 aa27.75■■■□□ 2.03
SND1-214ENST00000489417 IL13P35225 146 aa27.75■■■□□ 2.03
SND1-214ENST00000489417 AMPHP49418 695 aa27.75■■■□□ 2.03
SND1-214ENST00000489417 TOM1O60784 492 aa27.75■■■□□ 2.03
SND1-214ENST00000489417 RTL1A6NKG5 1358 aa27.74■■■□□ 2.03
SND1-214ENST00000489417 AHDC1Q5TGY3 1603 aaPredicted RBP27.74■■■□□ 2.03
SND1-214ENST00000489417 PHRF1Q9P1Y6 1649 aaKnown RBP27.74■■■□□ 2.03
SND1-214ENST00000489417 LTN1O94822 1766 aa27.73■■■□□ 2.03
SND1-214ENST00000489417 PLEKHG5O94827 1062 aa27.73■■■□□ 2.03
SND1-214ENST00000489417 CCDC146Q8IYE0 955 aa27.73■■■□□ 2.03
SND1-214ENST00000489417 HSP90AB2PQ58FF8 381 aa27.72■■■□□ 2.03
SND1-214ENST00000489417 HOXC9P31274 260 aa27.71■■■□□ 2.03
SND1-214ENST00000489417 EIF4A2Q14240 407 aaKnown RBP27.71■■■□□ 2.03
SND1-214ENST00000489417 CRYBG1Q9Y4K1 1723 aa27.71■■■□□ 2.03
SND1-214ENST00000489417 SENP3-EIF4A1A0A087X0R7 540 aa27.69■■■□□ 2.02
SND1-214ENST00000489417 RUNDC1Q96C34 613 aa27.69■■■□□ 2.02
SND1-214ENST00000489417 ARHGEF25Q86VW2 580 aa27.68■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms