RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 NPC1L1Q9UHC9 1359 aa21.58■■□□□ 1.04
SYNE1-227ENST00000489156 KRT28Q7Z3Y7 464 aa21.58■■□□□ 1.04
SYNE1-227ENST00000489156 NHSL1Q5SYE7 1610 aa21.58■■□□□ 1.04
SYNE1-227ENST00000489156 USP6P35125 1406 aa21.57■■□□□ 1.04
SYNE1-227ENST00000489156 MYBBP1AQ9BQG0 1328 aaKnown RBP21.56■■□□□ 1.04
SYNE1-227ENST00000489156 MRS2Q9HD23 443 aa21.56■■□□□ 1.04
SYNE1-227ENST00000489156 NSD3Q9BZ95 1437 aa21.54■■□□□ 1.04
SYNE1-227ENST00000489156 PAK3O75914 559 aaPredicted RBP21.54■■□□□ 1.04
SYNE1-227ENST00000489156 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.54■■□□□ 1.04
SYNE1-227ENST00000489156 PXDNQ92626 1479 aa21.54■■□□□ 1.04
SYNE1-227ENST00000489156 AMER1Q5JTC6 1135 aaPredicted RBP21.54■■□□□ 1.04
SYNE1-227ENST00000489156 NRKQ7Z2Y5 1582 aa21.53■■□□□ 1.04
SYNE1-227ENST00000489156 TRPM3Q9HCF6 1732 aaPredicted RBP21.53■■□□□ 1.04
SYNE1-227ENST00000489156 EDC4Q6P2E9 1401 aaKnown RBP21.53■■□□□ 1.04
SYNE1-227ENST00000489156 AHDC1Q5TGY3 1603 aaPredicted RBP21.52■■□□□ 1.04
SYNE1-227ENST00000489156 CCDC184Q52MB2 194 aa21.52■■□□□ 1.04
SYNE1-227ENST00000489156 PHLPP1O60346 1717 aa21.52■■□□□ 1.04
SYNE1-227ENST00000489156 SOS2Q07890 1332 aaPredicted RBP21.52■■□□□ 1.04
SYNE1-227ENST00000489156 TTC21BQ7Z4L5 1316 aa21.52■■□□□ 1.04
SYNE1-227ENST00000489156 BRD4O60885 1362 aaPredicted RBP21.52■■□□□ 1.04
SYNE1-227ENST00000489156 SSH2Q76I76 1423 aa21.52■■□□□ 1.04
SYNE1-227ENST00000489156 CNGB1Q14028 1251 aaPredicted RBP21.5■■□□□ 1.03
SYNE1-227ENST00000489156 CC2D1BQ5T0F9 858 aaKnown RBP21.5■■□□□ 1.03
SYNE1-227ENST00000489156 NLRP13Q86W25 1043 aa21.5■■□□□ 1.03
SYNE1-227ENST00000489156 LMOD2Q6P5Q4 547 aa21.48■■□□□ 1.03
SYNE1-227ENST00000489156 NME9Q86XW9 330 aa21.47■■□□□ 1.03
SYNE1-227ENST00000489156 SBNO1A3KN83 1393 aa21.47■■□□□ 1.03
SYNE1-227ENST00000489156 CGNL1Q0VF96 1302 aa21.47■■□□□ 1.03
SYNE1-227ENST00000489156 TTC21AQ8NDW8 1320 aa21.47■■□□□ 1.03
SYNE1-227ENST00000489156 KIF20BQ96Q89 1820 aa21.47■■□□□ 1.03
SYNE1-227ENST00000489156 ABTB2Q8N961 1025 aa21.47■■□□□ 1.03
SYNE1-227ENST00000489156 SPATA31A3Q5VYP0 1347 aa21.46■■□□□ 1.03
SYNE1-227ENST00000489156 FYB1O15117 783 aa21.46■■□□□ 1.03
SYNE1-227ENST00000489156 NUTM2GQ5VZR2 741 aa21.46■■□□□ 1.03
SYNE1-227ENST00000489156 ZRANB1Q9UGI0 708 aa21.46■■□□□ 1.03
SYNE1-227ENST00000489156 ALS2Q96Q42 1657 aa21.46■■□□□ 1.03
SYNE1-227ENST00000489156 COL16A1Q07092 1604 aaPredicted RBP21.46■■□□□ 1.03
SYNE1-227ENST00000489156 PIK3C2AO00443 1686 aa21.46■■□□□ 1.03
SYNE1-227ENST00000489156 GGNBP2Q9H3C7 697 aa21.45■■□□□ 1.02
SYNE1-227ENST00000489156 TNS3Q68CZ2 1445 aa21.45■■□□□ 1.02
SYNE1-227ENST00000489156 LRRC59Q96AG4 307 aaKnown RBP21.44■■□□□ 1.02
SYNE1-227ENST00000489156 HSPA1LP34931 641 aa21.43■■□□□ 1.02
SYNE1-227ENST00000489156 NLRP6P59044 892 aa21.43■■□□□ 1.02
SYNE1-227ENST00000489156 FBXO41Q8TF61 875 aa21.43■■□□□ 1.02
SYNE1-227ENST00000489156 PLEKHG5O94827 1062 aa21.42■■□□□ 1.02
SYNE1-227ENST00000489156 FAM9BQ8IZU0 186 aa21.41■■□□□ 1.02
SYNE1-227ENST00000489156 PNISRQ8TF01 805 aaKnown RBP21.41■■□□□ 1.02
SYNE1-227ENST00000489156 MARF1Q9Y4F3 1742 aaKnown RBP21.4■■□□□ 1.02
SYNE1-227ENST00000489156 ANKRD26Q9UPS8 1709 aa21.39■■□□□ 1.01
SYNE1-227ENST00000489156 ARHGEF10O15013 1369 aa21.39■■□□□ 1.01
SYNE1-227ENST00000489156 NSD2O96028 1365 aa21.39■■□□□ 1.01
SYNE1-227ENST00000489156 COG3Q96JB2 828 aa21.39■■□□□ 1.01
SYNE1-227ENST00000489156 USP31Q70CQ4 1352 aa21.38■■□□□ 1.01
SYNE1-227ENST00000489156 PPP2R1AP30153 589 aa21.37■■□□□ 1.01
SYNE1-227ENST00000489156 OVOS2A0A0J9YW53 1432 aa21.37■■□□□ 1.01
SYNE1-227ENST00000489156 OVOS2Q6IE36 1432 aa21.37■■□□□ 1.01
SYNE1-227ENST00000489156 CABLES1Q8TDN4 633 aa21.37■■□□□ 1.01
SYNE1-227ENST00000489156 MORC1Q86VD1 984 aa21.35■■□□□ 1.01
SYNE1-227ENST00000489156 USP54Q70EL1 1684 aa21.35■■□□□ 1.01
SYNE1-227ENST00000489156 PNPLA6Q8IY17 1366 aa21.35■■□□□ 1.01
SYNE1-227ENST00000489156 SOX12O15370 315 aa21.35■■□□□ 1.01
SYNE1-227ENST00000489156 HNRNPUQ00839 825 aaKnown RBP eCLIP21.35■■□□□ 1.01
SYNE1-227ENST00000489156 MED1Q15648 1581 aaPredicted RBP21.34■■□□□ 1.01
SYNE1-227ENST00000489156 TNNT2P45379 298 aaPredicted RBP21.34■■□□□ 1.01
SYNE1-227ENST00000489156 FBLN1P23142 703 aa21.33■■□□□ 1.01
SYNE1-227ENST00000489156 CRYBG1Q9Y4K1 1723 aa21.33■■□□□ 1.01
SYNE1-227ENST00000489156 USP19O94966 1318 aa21.32■■□□□ 1
SYNE1-227ENST00000489156 SHPRHQ149N8 1683 aa21.32■■□□□ 1
SYNE1-227ENST00000489156 COL22A1Q8NFW1 1626 aaPredicted RBP21.31■■□□□ 1
SYNE1-227ENST00000489156 INSRP06213 1382 aa21.31■■□□□ 1
SYNE1-227ENST00000489156 JCADQ9P266 1359 aa21.31■■□□□ 1
SYNE1-227ENST00000489156 MAP2P11137 1827 aaKnown RBP21.31■■□□□ 1
SYNE1-227ENST00000489156 PHRF1Q9P1Y6 1649 aaKnown RBP21.31■■□□□ 1
SYNE1-227ENST00000489156 GCP02774 474 aa21.3■■□□□ 1
SYNE1-227ENST00000489156 ABCA3Q99758 1704 aa21.3■■□□□ 1
SYNE1-227ENST00000489156 SLIT3O75094 1523 aa21.3■■□□□ 1
SYNE1-227ENST00000489156 HAP1P54257 671 aaPredicted RBP21.28■■□□□ 1
SYNE1-227ENST00000489156 KCNH5Q8NCM2 988 aa21.28■■□□□ 1
SYNE1-227ENST00000489156 NUTM2BA6NNL0 878 aaPredicted RBP21.26■□□□□ 0.99
SYNE1-227ENST00000489156 NUTM2EB1AL46 878 aaPredicted RBP21.26■□□□□ 0.99
SYNE1-227ENST00000489156 NUTM2AQ8IVF1 878 aaPredicted RBP21.26■□□□□ 0.99
SYNE1-227ENST00000489156 ZBED9Q6R2W3 1325 aa21.26■□□□□ 0.99
SYNE1-227ENST00000489156 ZC3H6P61129 1189 aaKnown RBP21.26■□□□□ 0.99
SYNE1-227ENST00000489156 RRS1Q15050 365 aaKnown RBP21.26■□□□□ 0.99
SYNE1-227ENST00000489156 NFAT5O94916 1531 aa21.25■□□□□ 0.99
SYNE1-227ENST00000489156 LTN1O94822 1766 aa21.25■□□□□ 0.99
SYNE1-227ENST00000489156 AATKQ6ZMQ8 1374 aa21.23■□□□□ 0.99
SYNE1-227ENST00000489156 ZBTB7CA1YPR0 619 aa21.23■□□□□ 0.99
SYNE1-227ENST00000489156 EMILIN1Q9Y6C2 1016 aa21.22■□□□□ 0.99
SYNE1-227ENST00000489156 POLKQ9UBT6 870 aa21.22■□□□□ 0.99
SYNE1-227ENST00000489156 MAP3K19Q56UN5 1328 aa21.21■□□□□ 0.99
SYNE1-227ENST00000489156 SPATA31A6Q5VVP1 1343 aa21.21■□□□□ 0.99
SYNE1-227ENST00000489156 PPM1GO15355 546 aaPredicted RBP21.21■□□□□ 0.99
SYNE1-227ENST00000489156 ADAMTS2O95450 1211 aa21.21■□□□□ 0.99
SYNE1-227ENST00000489156 ARHGEF25Q86VW2 580 aa21.21■□□□□ 0.99
SYNE1-227ENST00000489156 KIAA0232Q92628 1395 aa21.21■□□□□ 0.99
SYNE1-227ENST00000489156 MTHFSP49914 203 aa21.2■□□□□ 0.98
SYNE1-227ENST00000489156 WDR43Q15061 677 aaKnown RBP eCLIP21.19■□□□□ 0.98
SYNE1-227ENST00000489156 CHRNA2Q15822 529 aa21.19■□□□□ 0.98
SYNE1-227ENST00000489156 PRDM11Q9NQV5 511 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms