RNA–Protein interactions for RNA: ENST00000489111.1

USP11-211, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 3

Gene USP11, Length 516 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-211ENST00000489111 TTC21AQ8NDW8 1320 aa13.44□□□□□ -0.26
USP11-211ENST00000489111 PNISRQ8TF01 805 aaKnown RBP13.44□□□□□ -0.26
USP11-211ENST00000489111 CFAP53Q96M91 514 aa13.44□□□□□ -0.26
USP11-211ENST00000489111 MON2Q7Z3U7 1717 aa13.44□□□□□ -0.26
USP11-211ENST00000489111 C1orf167Q5SNV9 1468 aa13.43□□□□□ -0.26
USP11-211ENST00000489111 WDR43Q15061 677 aaKnown RBP eCLIP13.43□□□□□ -0.26
USP11-211ENST00000489111 STRCP1A6NGW2 1772 aa13.43□□□□□ -0.26
USP11-211ENST00000489111 NRKQ7Z2Y5 1582 aa13.42□□□□□ -0.26
USP11-211ENST00000489111 HNRNPUQ00839 825 aaKnown RBP eCLIP13.42□□□□□ -0.26
USP11-211ENST00000489111 AKAP12Q02952 1782 aa13.42□□□□□ -0.26
USP11-211ENST00000489111 SCAF1Q9H7N4 1312 aaKnown RBP13.41□□□□□ -0.26
USP11-211ENST00000489111 MST1RQ04912 1400 aa13.41□□□□□ -0.26
USP11-211ENST00000489111 SSH2Q76I76 1423 aa13.41□□□□□ -0.26
USP11-211ENST00000489111 KIF20BQ96Q89 1820 aa13.41□□□□□ -0.26
USP11-211ENST00000489111 MTHFSP49914 203 aa13.4□□□□□ -0.26
USP11-211ENST00000489111 PSME1Q06323 249 aa13.4□□□□□ -0.26
USP11-211ENST00000489111 ORAI2Q96SN7 254 aa13.4□□□□□ -0.26
USP11-211ENST00000489111 PAK3O75914 559 aaPredicted RBP13.39□□□□□ -0.27
USP11-211ENST00000489111 ZRANB1Q9UGI0 708 aa13.39□□□□□ -0.27
USP11-211ENST00000489111 ANKRD26Q9UPS8 1709 aa13.39□□□□□ -0.27
USP11-211ENST00000489111 OVOS2A0A0J9YW53 1432 aa13.39□□□□□ -0.27
USP11-211ENST00000489111 OVOS2Q6IE36 1432 aa13.39□□□□□ -0.27
USP11-211ENST00000489111 INSRP06213 1382 aa13.38□□□□□ -0.27
USP11-211ENST00000489111 KIF1AQ12756 1690 aa13.37□□□□□ -0.27
USP11-211ENST00000489111 AATKQ6ZMQ8 1374 aa13.37□□□□□ -0.27
USP11-211ENST00000489111 USP31Q70CQ4 1352 aa13.36□□□□□ -0.27
USP11-211ENST00000489111 FOXO3O43524 673 aa13.36□□□□□ -0.27
USP11-211ENST00000489111 ABTB2Q8N961 1025 aa13.36□□□□□ -0.27
USP11-211ENST00000489111 PPM1GO15355 546 aaPredicted RBP13.35□□□□□ -0.27
USP11-211ENST00000489111 NLRP6P59044 892 aa13.35□□□□□ -0.27
USP11-211ENST00000489111 BLMP54132 1417 aaPredicted RBP13.35□□□□□ -0.27
USP11-211ENST00000489111 SMG6Q86US8 1419 aaKnown RBP13.35□□□□□ -0.27
USP11-211ENST00000489111 NPHP3Q7Z494 1330 aa13.35□□□□□ -0.27
USP11-211ENST00000489111 XPCQ01831 940 aaPredicted RBP13.34□□□□□ -0.27
USP11-211ENST00000489111 KRT28Q7Z3Y7 464 aa13.34□□□□□ -0.27
USP11-211ENST00000489111 POLKQ9UBT6 870 aa13.34□□□□□ -0.27
USP11-211ENST00000489111 ADAMTS8Q9UP79 889 aa13.34□□□□□ -0.27
USP11-211ENST00000489111 NUDCQ9Y266 331 aa13.34□□□□□ -0.27
USP11-211ENST00000489111 RGPD8O14715 1765 aaPredicted RBP13.34□□□□□ -0.27
USP11-211ENST00000489111 CDK12Q9NYV4 1490 aaPredicted RBP13.34□□□□□ -0.27
USP11-211ENST00000489111 ZBED9Q6R2W3 1325 aa13.34□□□□□ -0.27
USP11-211ENST00000489111 SOX12O15370 315 aa13.33□□□□□ -0.28
USP11-211ENST00000489111 NUTM2GQ5VZR2 741 aa13.33□□□□□ -0.28
USP11-211ENST00000489111 SLAIN2Q9P270 581 aa13.33□□□□□ -0.28
USP11-211ENST00000489111 EMILIN1Q9Y6C2 1016 aa13.33□□□□□ -0.28
USP11-211ENST00000489111 PIK3C2AO00443 1686 aa13.32□□□□□ -0.28
USP11-211ENST00000489111 RRS1Q15050 365 aaKnown RBP13.32□□□□□ -0.28
USP11-211ENST00000489111 LMOD2Q6P5Q4 547 aa13.32□□□□□ -0.28
USP11-211ENST00000489111 PNPLA6Q8IY17 1366 aa13.32□□□□□ -0.28
USP11-211ENST00000489111 COL3A1P02461 1466 aaPredicted RBP13.31□□□□□ -0.28
USP11-211ENST00000489111 DIAPH1O60610 1272 aaKnown RBP13.31□□□□□ -0.28
USP11-211ENST00000489111 BRINP3Q76B58 766 aa13.31□□□□□ -0.28
USP11-211ENST00000489111 U2SURPO15042 1029 aaKnown RBP13.3□□□□□ -0.28
USP11-211ENST00000489111 U2AF1L5P0DN76 240 aaPredicted RBP13.3□□□□□ -0.28
USP11-211ENST00000489111 FBLN1P23142 703 aa13.3□□□□□ -0.28
USP11-211ENST00000489111 U2AF1Q01081 240 aaKnown RBP eCLIP13.3□□□□□ -0.28
USP11-211ENST00000489111 SBNO1A3KN83 1393 aa13.3□□□□□ -0.28
USP11-211ENST00000489111 XIRP1Q702N8 1843 aaKnown RBP13.29□□□□□ -0.28
USP11-211ENST00000489111 LTBP4Q8N2S1 1624 aa13.29□□□□□ -0.28
USP11-211ENST00000489111 AMPHP49418 695 aa13.28□□□□□ -0.28
USP11-211ENST00000489111 CCDC146Q8IYE0 955 aa13.28□□□□□ -0.28
USP11-211ENST00000489111 KCNH5Q8NCM2 988 aa13.28□□□□□ -0.28
USP11-211ENST00000489111 MAP3K19Q56UN5 1328 aa13.28□□□□□ -0.28
USP11-211ENST00000489111 TNS3Q68CZ2 1445 aa13.28□□□□□ -0.28
USP11-211ENST00000489111 USP54Q70EL1 1684 aa13.28□□□□□ -0.28
USP11-211ENST00000489111 DDX17Q92841 729 aaKnown RBP13.27□□□□□ -0.29
USP11-211ENST00000489111 ARHGEF10O15013 1369 aa13.27□□□□□ -0.29
USP11-211ENST00000489111 FLT4P35916 1363 aa13.27□□□□□ -0.29
USP11-211ENST00000489111 PXDNQ92626 1479 aa13.27□□□□□ -0.29
USP11-211ENST00000489111 SHPRHQ149N8 1683 aa13.27□□□□□ -0.29
USP11-211ENST00000489111 SENP3-EIF4A1A0A087X0R7 540 aa13.26□□□□□ -0.29
USP11-211ENST00000489111 RTL1A6NKG5 1358 aa13.26□□□□□ -0.29
USP11-211ENST00000489111 USP19O94966 1318 aa13.26□□□□□ -0.29
USP11-211ENST00000489111 KIF24Q5T7B8 1368 aa13.26□□□□□ -0.29
USP11-211ENST00000489111 TRPM3Q9HCF6 1732 aaPredicted RBP13.25□□□□□ -0.29
USP11-211ENST00000489111 PLEKHG5O94827 1062 aa13.25□□□□□ -0.29
USP11-211ENST00000489111 RUNDC1Q96C34 613 aa13.25□□□□□ -0.29
USP11-211ENST00000489111 PNNQ9H307 717 aaKnown RBP13.25□□□□□ -0.29
USP11-211ENST00000489111 SLIT3O75094 1523 aa13.24□□□□□ -0.29
USP11-211ENST00000489111 SPATA31A3Q5VYP0 1347 aa13.24□□□□□ -0.29
USP11-211ENST00000489111 MAPK8IP3Q9UPT6 1336 aa13.24□□□□□ -0.29
USP11-211ENST00000489111 IL13P35225 146 aa13.24□□□□□ -0.29
USP11-211ENST00000489111 SALL2Q9Y467 1007 aaPredicted RBP13.24□□□□□ -0.29
USP11-211ENST00000489111 NFAT5O94916 1531 aa13.23□□□□□ -0.29
USP11-211ENST00000489111 ZBTB7CA1YPR0 619 aa13.23□□□□□ -0.29
USP11-211ENST00000489111 GCP02774 474 aa13.23□□□□□ -0.29
USP11-211ENST00000489111 NEFMP07197 916 aa13.23□□□□□ -0.29
USP11-211ENST00000489111 NGEFQ8N5V2 710 aa13.23□□□□□ -0.29
USP11-211ENST00000489111 SOS2Q07890 1332 aaPredicted RBP13.22□□□□□ -0.29
USP11-211ENST00000489111 APAF1O14727 1248 aa13.22□□□□□ -0.29
USP11-211ENST00000489111 EIF4A2Q14240 407 aaKnown RBP13.22□□□□□ -0.29
USP11-211ENST00000489111 HSP90AB2PQ58FF8 381 aa13.22□□□□□ -0.29
USP11-211ENST00000489111 FCHSD2O94868 740 aa13.21□□□□□ -0.29
USP11-211ENST00000489111 HOXC9P31274 260 aa13.21□□□□□ -0.29
USP11-211ENST00000489111 ALS2Q96Q42 1657 aa13.21□□□□□ -0.3
USP11-211ENST00000489111 PEAK1Q9H792 1746 aa13.2□□□□□ -0.3
USP11-211ENST00000489111 MARF1Q9Y4F3 1742 aaKnown RBP13.2□□□□□ -0.3
USP11-211ENST00000489111 PDE3BQ13370 1112 aa13.2□□□□□ -0.3
USP11-211ENST00000489111 IQSEC2Q5JU85 1478 aa13.2□□□□□ -0.3
USP11-211ENST00000489111 MED1Q15648 1581 aaPredicted RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms