RNA–Protein interactions for RNA: ENST00000489072.5

HMGN1-217, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 1,014 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-217ENST00000489072 CRYBG1Q9Y4K1 1723 aa35.73■■■■□ 3.31
HMGN1-217ENST00000489072 ACEP12821 1306 aa35.73■■■■□ 3.31
HMGN1-217ENST00000489072 PAK3O75914 559 aaPredicted RBP35.72■■■■□ 3.31
HMGN1-217ENST00000489072 PLCH1Q4KWH8 1693 aa35.7■■■■□ 3.31
HMGN1-217ENST00000489072 RALGAPBQ86X10 1494 aa35.69■■■■□ 3.3
HMGN1-217ENST00000489072 PPIP5K1Q6PFW1 1433 aa35.69■■■■□ 3.3
HMGN1-217ENST00000489072 UNC5CLQ8IV45 518 aa35.66■■■■□ 3.3
HMGN1-217ENST00000489072 NWD2Q9ULI1 1742 aa35.65■■■■□ 3.3
HMGN1-217ENST00000489072 EVC2Q86UK5 1308 aa35.64■■■■□ 3.3
HMGN1-217ENST00000489072 CARD11Q9BXL7 1154 aa35.63■■■■□ 3.29
HMGN1-217ENST00000489072 FAM83GA6ND36 823 aa35.62■■■■□ 3.29
HMGN1-217ENST00000489072 GJD4Q96KN9 370 aaPredicted RBP35.6■■■■□ 3.29
HMGN1-217ENST00000489072 GLI3P10071 1580 aa35.59■■■■□ 3.29
HMGN1-217ENST00000489072 PHRF1Q9P1Y6 1649 aaKnown RBP35.59■■■■□ 3.29
HMGN1-217ENST00000489072 CABP1Q9NZU7 370 aa35.59■■■■□ 3.29
HMGN1-217ENST00000489072 UPF1Q92900 1129 aaKnown RBP eCLIP35.58■■■■□ 3.29
HMGN1-217ENST00000489072 NUTM2GQ5VZR2 741 aa35.57■■■■□ 3.28
HMGN1-217ENST00000489072 COL14A1Q05707 1796 aaKnown RBP35.56■■■■□ 3.28
HMGN1-217ENST00000489072 NRAPQ86VF7 1730 aa35.56■■■■□ 3.28
HMGN1-217ENST00000489072 SBNO2Q9Y2G9 1366 aa35.54■■■■□ 3.28
HMGN1-217ENST00000489072 VPS72Q15906 364 aa35.52■■■■□ 3.28
HMGN1-217ENST00000489072 PCGF6Q9BYE7 350 aa35.52■■■■□ 3.28
HMGN1-217ENST00000489072 USP6P35125 1406 aa35.51■■■■□ 3.28
HMGN1-217ENST00000489072 ABTB2Q8N961 1025 aa35.5■■■■□ 3.27
HMGN1-217ENST00000489072 BTG4Q9NY30 223 aa35.49■■■■□ 3.27
HMGN1-217ENST00000489072 BRD4O60885 1362 aaPredicted RBP35.48■■■■□ 3.27
HMGN1-217ENST00000489072 NRKQ7Z2Y5 1582 aa35.47■■■■□ 3.27
HMGN1-217ENST00000489072 AKAP12Q02952 1782 aa35.47■■■■□ 3.27
HMGN1-217ENST00000489072 KIAA0232Q92628 1395 aa35.47■■■■□ 3.27
HMGN1-217ENST00000489072 PRDM11Q9NQV5 511 aa35.46■■■■□ 3.27
HMGN1-217ENST00000489072 USP19O94966 1318 aa35.45■■■■□ 3.27
HMGN1-217ENST00000489072 ATAD2Q6PL18 1390 aa35.45■■■■□ 3.27
HMGN1-217ENST00000489072 SSH2Q76I76 1423 aa35.45■■■■□ 3.27
HMGN1-217ENST00000489072 ZC3H6P61129 1189 aaKnown RBP35.43■■■■□ 3.26
HMGN1-217ENST00000489072 CCDC9Q9Y3X0 531 aaKnown RBP35.43■■■■□ 3.26
HMGN1-217ENST00000489072 EP400Q96L91 3159 aa35.42■■■■□ 3.26
HMGN1-217ENST00000489072 BRWD3Q6RI45 1802 aa35.42■■■■□ 3.26
HMGN1-217ENST00000489072 CHRNA2Q15822 529 aa35.41■■■■□ 3.26
HMGN1-217ENST00000489072 PIK3C2AO00443 1686 aa35.4■■■■□ 3.26
HMGN1-217ENST00000489072 NLRP13Q86W25 1043 aa35.4■■■■□ 3.26
HMGN1-217ENST00000489072 CLSPNQ9HAW4 1339 aa35.38■■■■□ 3.25
HMGN1-217ENST00000489072 CPSF1Q10570 1443 aaKnown RBP35.38■■■■□ 3.25
HMGN1-217ENST00000489072 ONECUT3O60422 494 aaPredicted RBP35.36■■■■□ 3.25
HMGN1-217ENST00000489072 ZNF692Q9BU19 519 aaPredicted RBP35.36■■■■□ 3.25
HMGN1-217ENST00000489072 SEPT12Q8IYM1 358 aa35.35■■■■□ 3.25
HMGN1-217ENST00000489072 ST20-MTHFSA0A0A6YYL1 179 aa35.34■■■■□ 3.25
HMGN1-217ENST00000489072 GCP02774 474 aa35.34■■■■□ 3.25
HMGN1-217ENST00000489072 TESK2Q96S53 571 aa35.34■■■■□ 3.25
HMGN1-217ENST00000489072 CPDO75976 1380 aa35.34■■■■□ 3.25
HMGN1-217ENST00000489072 MON2Q7Z3U7 1717 aa35.34■■■■□ 3.25
HMGN1-217ENST00000489072 TTC21BQ7Z4L5 1316 aa35.33■■■■□ 3.25
HMGN1-217ENST00000489072 NLRP6P59044 892 aa35.33■■■■□ 3.25
HMGN1-217ENST00000489072 SLIT3O75094 1523 aa35.32■■■■□ 3.25
HMGN1-217ENST00000489072 LMO7Q8WWI1 1683 aa35.32■■■■□ 3.24
HMGN1-217ENST00000489072 SPATA31A5Q5VU36 1347 aa35.32■■■■□ 3.24
HMGN1-217ENST00000489072 SPATA31A7Q8IWB4 1347 aa35.32■■■■□ 3.24
HMGN1-217ENST00000489072 CD163L1Q9NR16 1453 aa35.31■■■■□ 3.24
HMGN1-217ENST00000489072 KTN1Q86UP2 1357 aaKnown RBP35.3■■■■□ 3.24
HMGN1-217ENST00000489072 CAMTA1Q9Y6Y1 1673 aa35.3■■■■□ 3.24
HMGN1-217ENST00000489072 TIMELESSQ9UNS1 1208 aa35.29■■■■□ 3.24
HMGN1-217ENST00000489072 FAM98CQ17RN3 349 aaKnown RBP35.28■■■■□ 3.24
HMGN1-217ENST00000489072 STRN4Q9NRL3 753 aa35.27■■■■□ 3.24
HMGN1-217ENST00000489072 TMC1Q8TDI8 760 aa35.26■■■■□ 3.24
HMGN1-217ENST00000489072 PUS7Q96PZ0 661 aaKnown RBP35.26■■■■□ 3.24
HMGN1-217ENST00000489072 TTC21AQ8NDW8 1320 aa35.26■■■■□ 3.23
HMGN1-217ENST00000489072 USP47Q96K76 1375 aa35.25■■■■□ 3.23
HMGN1-217ENST00000489072 SLC12A5Q9H2X9 1139 aa35.25■■■■□ 3.23
HMGN1-217ENST00000489072 SPATA31A1Q5TZJ5 1347 aa35.23■■■■□ 3.23
HMGN1-217ENST00000489072 THSD7AQ9UPZ6 1657 aa35.22■■■■□ 3.23
HMGN1-217ENST00000489072 A0A0G2JS52 829 aa35.21■■■■□ 3.23
HMGN1-217ENST00000489072 MYT1Q01538 1121 aa35.21■■■■□ 3.23
HMGN1-217ENST00000489072 KRT27Q7Z3Y8 459 aa35.19■■■■□ 3.22
HMGN1-217ENST00000489072 COL18A1P39060 1754 aa35.18■■■■□ 3.22
HMGN1-217ENST00000489072 EVA1CP58658 441 aa35.18■■■■□ 3.22
HMGN1-217ENST00000489072 SUGP2Q8IX01 1082 aaKnown RBP eCLIP35.18■■■■□ 3.22
HMGN1-217ENST00000489072 A0A1W2PP64 1363 aa35.17■■■■□ 3.22
HMGN1-217ENST00000489072 ZBTB7CA1YPR0 619 aa35.17■■■■□ 3.22
HMGN1-217ENST00000489072 LARP1Q6PKG0 1096 aaKnown RBP35.17■■■■□ 3.22
HMGN1-217ENST00000489072 HDGFL2Q7Z4V5 671 aaPredicted RBP35.17■■■■□ 3.22
HMGN1-217ENST00000489072 CCER1Q8TC90 406 aaPredicted RBP35.17■■■■□ 3.22
HMGN1-217ENST00000489072 COL5A2P05997 1499 aaPredicted RBP35.16■■■■□ 3.22
HMGN1-217ENST00000489072 ZRANB1Q9UGI0 708 aa35.16■■■■□ 3.22
HMGN1-217ENST00000489072 USP54Q70EL1 1684 aa35.16■■■■□ 3.22
HMGN1-217ENST00000489072 AATKQ6ZMQ8 1374 aa35.15■■■■□ 3.22
HMGN1-217ENST00000489072 SLC24A1O60721 1099 aa35.15■■■■□ 3.22
HMGN1-217ENST00000489072 NFAT5O94916 1531 aa35.14■■■■□ 3.22
HMGN1-217ENST00000489072 EDC4Q6P2E9 1401 aaKnown RBP35.14■■■■□ 3.22
HMGN1-217ENST00000489072 NME9Q86XW9 330 aa35.13■■■■□ 3.21
HMGN1-217ENST00000489072 TERF2IPQ9NYB0 399 aa35.13■■■■□ 3.21
HMGN1-217ENST00000489072 USP31Q70CQ4 1352 aa35.13■■■■□ 3.21
HMGN1-217ENST00000489072 SOX12O15370 315 aa35.12■■■■□ 3.21
HMGN1-217ENST00000489072 CCDC125Q86Z20 511 aa35.12■■■■□ 3.21
HMGN1-217ENST00000489072 KCNH5Q8NCM2 988 aa35.12■■■■□ 3.21
HMGN1-217ENST00000489072 USP35Q9P2H5 1018 aa35.12■■■■□ 3.21
HMGN1-217ENST00000489072 NINLQ9Y2I6 1382 aa35.12■■■■□ 3.21
HMGN1-217ENST00000489072 ARHGEF25Q86VW2 580 aa35.1■■■■□ 3.21
HMGN1-217ENST00000489072 BLMP54132 1417 aaPredicted RBP35.09■■■■□ 3.21
HMGN1-217ENST00000489072 RGPD5Q99666 1765 aa35.09■■■■□ 3.21
HMGN1-217ENST00000489072 TMF1P82094 1093 aa35.08■■■■□ 3.21
HMGN1-217ENST00000489072 AXIN2Q9Y2T1 843 aa35.08■■■■□ 3.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms