RNA–Protein interactions for RNA: ENST00000488921.5

SPTLC1-207, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 3

Gene SPTLC1, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-207ENST00000488921 UNC5CLQ8IV45 518 aa19.76■□□□□ 0.75
SPTLC1-207ENST00000488921 CABLES1Q8TDN4 633 aa19.76■□□□□ 0.75
SPTLC1-207ENST00000488921 PAK3O75914 559 aaPredicted RBP19.75■□□□□ 0.75
SPTLC1-207ENST00000488921 NRAPQ86VF7 1730 aa19.75■□□□□ 0.75
SPTLC1-207ENST00000488921 PLEKHG5O94827 1062 aa19.74■□□□□ 0.75
SPTLC1-207ENST00000488921 PPIP5K1Q6PFW1 1433 aa19.74■□□□□ 0.75
SPTLC1-207ENST00000488921 GLI3P10071 1580 aa19.74■□□□□ 0.75
SPTLC1-207ENST00000488921 ACEP12821 1306 aa19.74■□□□□ 0.75
SPTLC1-207ENST00000488921 PLEKHG3A1L390 1219 aa19.73■□□□□ 0.75
SPTLC1-207ENST00000488921 UPF1Q92900 1129 aaKnown RBP eCLIP19.73■□□□□ 0.75
SPTLC1-207ENST00000488921 GJD4Q96KN9 370 aaPredicted RBP19.73■□□□□ 0.75
SPTLC1-207ENST00000488921 RALGAPBQ86X10 1494 aa19.72■□□□□ 0.75
SPTLC1-207ENST00000488921 ATAD2Q6PL18 1390 aa19.71■□□□□ 0.75
SPTLC1-207ENST00000488921 EVC2Q86UK5 1308 aa19.71■□□□□ 0.75
SPTLC1-207ENST00000488921 BRD4O60885 1362 aaPredicted RBP19.7■□□□□ 0.74
SPTLC1-207ENST00000488921 NBPF8Q3BBV2 869 aa19.69■□□□□ 0.74
SPTLC1-207ENST00000488921 CABP2Q9NPB3 220 aa19.69■□□□□ 0.74
SPTLC1-207ENST00000488921 VPS72Q15906 364 aa19.68■□□□□ 0.74
SPTLC1-207ENST00000488921 AKAP12Q02952 1782 aa19.67■□□□□ 0.74
SPTLC1-207ENST00000488921 BRWD3Q6RI45 1802 aa19.67■□□□□ 0.74
SPTLC1-207ENST00000488921 NRKQ7Z2Y5 1582 aa19.67■□□□□ 0.74
SPTLC1-207ENST00000488921 SBNO2Q9Y2G9 1366 aa19.67■□□□□ 0.74
SPTLC1-207ENST00000488921 FAM83GA6ND36 823 aa19.65■□□□□ 0.74
SPTLC1-207ENST00000488921 CARD11Q9BXL7 1154 aa19.65■□□□□ 0.74
SPTLC1-207ENST00000488921 CCDC9Q9Y3X0 531 aaKnown RBP19.65■□□□□ 0.74
SPTLC1-207ENST00000488921 PRDM11Q9NQV5 511 aa19.64■□□□□ 0.73
SPTLC1-207ENST00000488921 BTG4Q9NY30 223 aa19.64■□□□□ 0.73
SPTLC1-207ENST00000488921 USP6P35125 1406 aa19.64■□□□□ 0.73
SPTLC1-207ENST00000488921 ABTB2Q8N961 1025 aa19.63■□□□□ 0.73
SPTLC1-207ENST00000488921 CABP1Q9NZU7 370 aa19.62■□□□□ 0.73
SPTLC1-207ENST00000488921 EP400Q96L91 3159 aa19.61■□□□□ 0.73
SPTLC1-207ENST00000488921 KIAA0232Q92628 1395 aa19.61■□□□□ 0.73
SPTLC1-207ENST00000488921 PIK3C2AO00443 1686 aa19.61■□□□□ 0.73
SPTLC1-207ENST00000488921 MON2Q7Z3U7 1717 aa19.6■□□□□ 0.73
SPTLC1-207ENST00000488921 USP19O94966 1318 aa19.6■□□□□ 0.73
SPTLC1-207ENST00000488921 NUTM2GQ5VZR2 741 aa19.6■□□□□ 0.73
SPTLC1-207ENST00000488921 NLRP13Q86W25 1043 aa19.6■□□□□ 0.73
SPTLC1-207ENST00000488921 LMO7Q8WWI1 1683 aa19.58■□□□□ 0.72
SPTLC1-207ENST00000488921 CPDO75976 1380 aa19.57■□□□□ 0.72
SPTLC1-207ENST00000488921 SLIT3O75094 1523 aa19.57■□□□□ 0.72
SPTLC1-207ENST00000488921 SEPT12Q8IYM1 358 aa19.57■□□□□ 0.72
SPTLC1-207ENST00000488921 ZNF692Q9BU19 519 aaPredicted RBP19.57■□□□□ 0.72
SPTLC1-207ENST00000488921 ONECUT3O60422 494 aaPredicted RBP19.56■□□□□ 0.72
SPTLC1-207ENST00000488921 ZC3H6P61129 1189 aaKnown RBP19.56■□□□□ 0.72
SPTLC1-207ENST00000488921 SSH2Q76I76 1423 aa19.56■□□□□ 0.72
SPTLC1-207ENST00000488921 THSD7AQ9UPZ6 1657 aa19.56■□□□□ 0.72
SPTLC1-207ENST00000488921 CCDC125Q86Z20 511 aa19.55■□□□□ 0.72
SPTLC1-207ENST00000488921 SPATA31A5Q5VU36 1347 aa19.54■□□□□ 0.72
SPTLC1-207ENST00000488921 SPATA31A7Q8IWB4 1347 aa19.54■□□□□ 0.72
SPTLC1-207ENST00000488921 CPSF1Q10570 1443 aaKnown RBP19.54■□□□□ 0.72
SPTLC1-207ENST00000488921 A0A0G2JS52 829 aa19.54■□□□□ 0.72
SPTLC1-207ENST00000488921 MYT1Q01538 1121 aa19.54■□□□□ 0.72
SPTLC1-207ENST00000488921 CHRNA2Q15822 529 aa19.54■□□□□ 0.72
SPTLC1-207ENST00000488921 TTC21AQ8NDW8 1320 aa19.52■□□□□ 0.72
SPTLC1-207ENST00000488921 CLSPNQ9HAW4 1339 aa19.52■□□□□ 0.72
SPTLC1-207ENST00000488921 GCP02774 474 aa19.52■□□□□ 0.72
SPTLC1-207ENST00000488921 NLRP6P59044 892 aa19.52■□□□□ 0.72
SPTLC1-207ENST00000488921 FAM98CQ17RN3 349 aaKnown RBP19.52■□□□□ 0.72
SPTLC1-207ENST00000488921 KTN1Q86UP2 1357 aaKnown RBP19.52■□□□□ 0.72
SPTLC1-207ENST00000488921 USP54Q70EL1 1684 aa19.52■□□□□ 0.71
SPTLC1-207ENST00000488921 BLMP54132 1417 aaPredicted RBP19.51■□□□□ 0.71
SPTLC1-207ENST00000488921 SLC24A1O60721 1099 aa19.51■□□□□ 0.71
SPTLC1-207ENST00000488921 KRT27Q7Z3Y8 459 aa19.51■□□□□ 0.71
SPTLC1-207ENST00000488921 CAMTA1Q9Y6Y1 1673 aa19.51■□□□□ 0.71
SPTLC1-207ENST00000488921 TTC21BQ7Z4L5 1316 aa19.51■□□□□ 0.71
SPTLC1-207ENST00000488921 STRN4Q9NRL3 753 aa19.5■□□□□ 0.71
SPTLC1-207ENST00000488921 SPATA31A1Q5TZJ5 1347 aa19.5■□□□□ 0.71
SPTLC1-207ENST00000488921 EVA1CP58658 441 aa19.49■□□□□ 0.71
SPTLC1-207ENST00000488921 RGPD1P0DJD0 1748 aa19.48■□□□□ 0.71
SPTLC1-207ENST00000488921 PUS7Q96PZ0 661 aaKnown RBP19.48■□□□□ 0.71
SPTLC1-207ENST00000488921 COL5A2P05997 1499 aaPredicted RBP19.48■□□□□ 0.71
SPTLC1-207ENST00000488921 TIMELESSQ9UNS1 1208 aa19.47■□□□□ 0.71
SPTLC1-207ENST00000488921 CD163L1Q9NR16 1453 aa19.47■□□□□ 0.71
SPTLC1-207ENST00000488921 COL18A1P39060 1754 aa19.47■□□□□ 0.71
SPTLC1-207ENST00000488921 NINLQ9Y2I6 1382 aa19.46■□□□□ 0.71
SPTLC1-207ENST00000488921 SF3B2Q13435 895 aaKnown RBP19.46■□□□□ 0.71
SPTLC1-207ENST00000488921 HDGFL2Q7Z4V5 671 aaPredicted RBP19.46■□□□□ 0.71
SPTLC1-207ENST00000488921 KCNH5Q8NCM2 988 aa19.46■□□□□ 0.71
SPTLC1-207ENST00000488921 ABCC6O95255 1503 aa19.46■□□□□ 0.71
SPTLC1-207ENST00000488921 AATKQ6ZMQ8 1374 aa19.45■□□□□ 0.7
SPTLC1-207ENST00000488921 TMC1Q8TDI8 760 aa19.45■□□□□ 0.7
SPTLC1-207ENST00000488921 PARP4Q9UKK3 1724 aaKnown RBP19.45■□□□□ 0.7
SPTLC1-207ENST00000488921 EDC4Q6P2E9 1401 aaKnown RBP19.44■□□□□ 0.7
SPTLC1-207ENST00000488921 ST20-MTHFSA0A0A6YYL1 179 aa19.44■□□□□ 0.7
SPTLC1-207ENST00000488921 PCGF6Q9BYE7 350 aa19.44■□□□□ 0.7
SPTLC1-207ENST00000488921 TERF2IPQ9NYB0 399 aa19.44■□□□□ 0.7
SPTLC1-207ENST00000488921 NFAT5O94916 1531 aa19.44■□□□□ 0.7
SPTLC1-207ENST00000488921 RGPD5Q99666 1765 aa19.44■□□□□ 0.7
SPTLC1-207ENST00000488921 WNK3Q9BYP7 1800 aa19.44■□□□□ 0.7
SPTLC1-207ENST00000488921 USP47Q96K76 1375 aa19.44■□□□□ 0.7
SPTLC1-207ENST00000488921 LTN1O94822 1766 aa19.43■□□□□ 0.7
SPTLC1-207ENST00000488921 ZBTB7CA1YPR0 619 aa19.43■□□□□ 0.7
SPTLC1-207ENST00000488921 TESK2Q96S53 571 aa19.43■□□□□ 0.7
SPTLC1-207ENST00000488921 CRB1P82279 1406 aa19.42■□□□□ 0.7
SPTLC1-207ENST00000488921 LARP1Q6PKG0 1096 aaKnown RBP19.42■□□□□ 0.7
SPTLC1-207ENST00000488921 BARGINQ6ZT62 677 aa19.42■□□□□ 0.7
SPTLC1-207ENST00000488921 USP35Q9P2H5 1018 aa19.42■□□□□ 0.7
SPTLC1-207ENST00000488921 THRAP3Q9Y2W1 955 aaKnown RBP19.42■□□□□ 0.7
SPTLC1-207ENST00000488921 A0A1W2PP64 1363 aa19.42■□□□□ 0.7
SPTLC1-207ENST00000488921 USP31Q70CQ4 1352 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms