RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 ADAMTS8Q9UP79 889 aa16.21■□□□□ 0.19
HDAC6-230ENST00000488543 POLR3AO14802 1390 aaPredicted RBP16.21■□□□□ 0.19
HDAC6-230ENST00000488543 RGPD8O14715 1765 aaPredicted RBP16.21■□□□□ 0.19
HDAC6-230ENST00000488543 ZRANB1Q9UGI0 708 aa16.21■□□□□ 0.18
HDAC6-230ENST00000488543 TMEM94Q12767 1356 aa16.2■□□□□ 0.18
HDAC6-230ENST00000488543 TOPAZ1Q8N9V7 1692 aa16.2■□□□□ 0.18
HDAC6-230ENST00000488543 NWD1Q149M9 1564 aa16.2■□□□□ 0.18
HDAC6-230ENST00000488543 ADGRL3Q9HAR2 1447 aa16.2■□□□□ 0.18
HDAC6-230ENST00000488543 AKAP12Q02952 1782 aa16.2■□□□□ 0.18
HDAC6-230ENST00000488543 NKTRP30414 1462 aaKnown RBP16.2■□□□□ 0.18
HDAC6-230ENST00000488543 FBLN1P23142 703 aa16.2■□□□□ 0.18
HDAC6-230ENST00000488543 MON2Q7Z3U7 1717 aa16.19■□□□□ 0.18
HDAC6-230ENST00000488543 CDC42BPGQ6DT37 1551 aa16.19■□□□□ 0.18
HDAC6-230ENST00000488543 NME9Q86XW9 330 aa16.19■□□□□ 0.18
HDAC6-230ENST00000488543 NGDNQ8NEJ9 315 aaKnown RBP16.19■□□□□ 0.18
HDAC6-230ENST00000488543 C19orf44Q9H6X5 657 aa16.18■□□□□ 0.18
HDAC6-230ENST00000488543 ITSN1Q15811 1721 aa16.18■□□□□ 0.18
HDAC6-230ENST00000488543 ZNF692Q9BU19 519 aaPredicted RBP16.18■□□□□ 0.18
HDAC6-230ENST00000488543 WDR43Q15061 677 aaKnown RBP eCLIP16.17■□□□□ 0.18
HDAC6-230ENST00000488543 ESCO1Q5FWF5 840 aa16.17■□□□□ 0.18
HDAC6-230ENST00000488543 ORAI2Q96SN7 254 aa16.17■□□□□ 0.18
HDAC6-230ENST00000488543 PHF23Q9BUL5 403 aaPredicted RBP16.16■□□□□ 0.18
HDAC6-230ENST00000488543 NUDCQ9Y266 331 aa16.16■□□□□ 0.18
HDAC6-230ENST00000488543 EDC4Q6P2E9 1401 aaKnown RBP16.15■□□□□ 0.18
HDAC6-230ENST00000488543 MSH5O43196 834 aa16.14■□□□□ 0.18
HDAC6-230ENST00000488543 FMN2Q9NZ56 1722 aa16.14■□□□□ 0.18
HDAC6-230ENST00000488543 TTC21BQ7Z4L5 1316 aa16.14■□□□□ 0.17
HDAC6-230ENST00000488543 B4GALNT3Q6L9W6 998 aa16.14■□□□□ 0.17
HDAC6-230ENST00000488543 PHF8Q9UPP1 1060 aa16.14■□□□□ 0.17
HDAC6-230ENST00000488543 ANKARQ7Z5J8 1434 aa16.14■□□□□ 0.17
HDAC6-230ENST00000488543 MTHFSP49914 203 aa16.13■□□□□ 0.17
HDAC6-230ENST00000488543 USP6P35125 1406 aa16.13■□□□□ 0.17
HDAC6-230ENST00000488543 NRKQ7Z2Y5 1582 aa16.12■□□□□ 0.17
HDAC6-230ENST00000488543 ATF3P18847 181 aa16.12■□□□□ 0.17
HDAC6-230ENST00000488543 SALL2Q9Y467 1007 aaPredicted RBP16.12■□□□□ 0.17
HDAC6-230ENST00000488543 DMRT2Q9Y5R5 561 aa16.12■□□□□ 0.17
HDAC6-230ENST00000488543 FOXO3O43524 673 aa16.11■□□□□ 0.17
HDAC6-230ENST00000488543 XPCQ01831 940 aaPredicted RBP16.11■□□□□ 0.17
HDAC6-230ENST00000488543 COL3A1P02461 1466 aaPredicted RBP16.11■□□□□ 0.17
HDAC6-230ENST00000488543 NUTM2GQ5VZR2 741 aa16.1■□□□□ 0.17
HDAC6-230ENST00000488543 PAK3O75914 559 aaPredicted RBP16.1■□□□□ 0.17
HDAC6-230ENST00000488543 PDE3BQ13370 1112 aa16.1■□□□□ 0.17
HDAC6-230ENST00000488543 LRRC7Q96NW7 1537 aa16.1■□□□□ 0.17
HDAC6-230ENST00000488543 SSH2Q76I76 1423 aa16.09■□□□□ 0.17
HDAC6-230ENST00000488543 DDX17Q92841 729 aaKnown RBP16.09■□□□□ 0.17
HDAC6-230ENST00000488543 SOX12O15370 315 aa16.08■□□□□ 0.17
HDAC6-230ENST00000488543 PSME1Q06323 249 aa16.08■□□□□ 0.17
HDAC6-230ENST00000488543 CCDC146Q8IYE0 955 aa16.08■□□□□ 0.17
HDAC6-230ENST00000488543 COG3Q96JB2 828 aa16.08■□□□□ 0.17
HDAC6-230ENST00000488543 PPM1GO15355 546 aaPredicted RBP16.08■□□□□ 0.16
HDAC6-230ENST00000488543 C1orf167Q5SNV9 1468 aa16.08■□□□□ 0.16
HDAC6-230ENST00000488543 ZNF521Q96K83 1311 aa16.07■□□□□ 0.16
HDAC6-230ENST00000488543 CADPS2Q86UW7 1296 aa16.07■□□□□ 0.16
HDAC6-230ENST00000488543 CDCA7LQ96GN5 454 aa16.07■□□□□ 0.16
HDAC6-230ENST00000488543 CFAP53Q96M91 514 aa16.07■□□□□ 0.16
HDAC6-230ENST00000488543 MSH6P52701 1360 aa16.06■□□□□ 0.16
HDAC6-230ENST00000488543 RRS1Q15050 365 aaKnown RBP16.06■□□□□ 0.16
HDAC6-230ENST00000488543 POLKQ9UBT6 870 aa16.06■□□□□ 0.16
HDAC6-230ENST00000488543 MAP2P11137 1827 aaKnown RBP16.06■□□□□ 0.16
HDAC6-230ENST00000488543 XIRP1Q702N8 1843 aaKnown RBP16.06■□□□□ 0.16
HDAC6-230ENST00000488543 NCOA3Q9Y6Q9 1424 aa16.06■□□□□ 0.16
HDAC6-230ENST00000488543 EMILIN1Q9Y6C2 1016 aa16.06■□□□□ 0.16
HDAC6-230ENST00000488543 RNF123Q5XPI4 1314 aa16.06■□□□□ 0.16
HDAC6-230ENST00000488543 MST1RQ04912 1400 aa16.05■□□□□ 0.16
HDAC6-230ENST00000488543 PLEKHG5O94827 1062 aa16.05■□□□□ 0.16
HDAC6-230ENST00000488543 PPP4R2Q9NY27 417 aa16.05■□□□□ 0.16
HDAC6-230ENST00000488543 IQSEC2Q5JU85 1478 aa16.05■□□□□ 0.16
HDAC6-230ENST00000488543 ABTB2Q8N961 1025 aa16.05■□□□□ 0.16
HDAC6-230ENST00000488543 NLRP6P59044 892 aa16.04■□□□□ 0.16
HDAC6-230ENST00000488543 PNPLA6Q8IY17 1366 aa16.04■□□□□ 0.16
HDAC6-230ENST00000488543 APAF1O14727 1248 aa16.04■□□□□ 0.16
HDAC6-230ENST00000488543 TTC21AQ8NDW8 1320 aa16.03■□□□□ 0.16
HDAC6-230ENST00000488543 KRT28Q7Z3Y7 464 aa16.02■□□□□ 0.15
HDAC6-230ENST00000488543 SLAIN2Q9P270 581 aa16.02■□□□□ 0.15
HDAC6-230ENST00000488543 DCCP43146 1447 aa16.01■□□□□ 0.15
HDAC6-230ENST00000488543 LMOD2Q6P5Q4 547 aa16.01■□□□□ 0.15
HDAC6-230ENST00000488543 OVOS2A0A0J9YW53 1432 aa16.01■□□□□ 0.15
HDAC6-230ENST00000488543 OVOS2Q6IE36 1432 aa16.01■□□□□ 0.15
HDAC6-230ENST00000488543 RUNDC1Q96C34 613 aa16■□□□□ 0.15
HDAC6-230ENST00000488543 ARXQ96QS3 562 aa16■□□□□ 0.15
HDAC6-230ENST00000488543 AATKQ6ZMQ8 1374 aa16■□□□□ 0.15
HDAC6-230ENST00000488543 ERICH6Q7L0X2 663 aa16■□□□□ 0.15
HDAC6-230ENST00000488543 BRINP3Q76B58 766 aa15.99■□□□□ 0.15
HDAC6-230ENST00000488543 NGEFQ8N5V2 710 aa15.99■□□□□ 0.15
HDAC6-230ENST00000488543 PIK3C2AO00443 1686 aa15.98■□□□□ 0.15
HDAC6-230ENST00000488543 CDK12Q9NYV4 1490 aaPredicted RBP15.98■□□□□ 0.15
HDAC6-230ENST00000488543 U2SURPO15042 1029 aaKnown RBP15.97■□□□□ 0.15
HDAC6-230ENST00000488543 U2AF1L5P0DN76 240 aaPredicted RBP15.97■□□□□ 0.15
HDAC6-230ENST00000488543 U2AF1Q01081 240 aaKnown RBP eCLIP15.97■□□□□ 0.15
HDAC6-230ENST00000488543 ERICH6BQ5W0A0 696 aa15.97■□□□□ 0.15
HDAC6-230ENST00000488543 USP31Q70CQ4 1352 aa15.97■□□□□ 0.15
HDAC6-230ENST00000488543 GOLGA2Q08379 1002 aa15.96■□□□□ 0.15
HDAC6-230ENST00000488543 DUSP27Q5VZP5 1158 aa15.96■□□□□ 0.15
HDAC6-230ENST00000488543 RCAN3Q9UKA8 241 aa15.96■□□□□ 0.15
HDAC6-230ENST00000488543 SLFN5Q08AF3 891 aa15.96■□□□□ 0.15
HDAC6-230ENST00000488543 TRMT2AQ8IZ69 625 aaKnown RBP15.96■□□□□ 0.15
HDAC6-230ENST00000488543 DIAPH1O60610 1272 aaKnown RBP15.95■□□□□ 0.14
HDAC6-230ENST00000488543 TCP11L2Q8N4U5 519 aa15.95■□□□□ 0.14
HDAC6-230ENST00000488543 MAP3K19Q56UN5 1328 aa15.95■□□□□ 0.14
HDAC6-230ENST00000488543 MARF1Q9Y4F3 1742 aaKnown RBP15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms