RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 ALS2Q96Q42 1657 aa32.48■■■□□ 2.79
PTPN4-211ENST00000488279 SRPK2P78362 688 aaKnown RBP32.48■■■□□ 2.79
PTPN4-211ENST00000488279 CCDC125Q86Z20 511 aa32.48■■■□□ 2.79
PTPN4-211ENST00000488279 GLI3P10071 1580 aa32.48■■■□□ 2.79
PTPN4-211ENST00000488279 SEPT12Q8IYM1 358 aa32.47■■■□□ 2.79
PTPN4-211ENST00000488279 POLR3AO14802 1390 aaPredicted RBP32.46■■■□□ 2.79
PTPN4-211ENST00000488279 ITSN1Q15811 1721 aa32.46■■■□□ 2.79
PTPN4-211ENST00000488279 ABCA3Q99758 1704 aa32.46■■■□□ 2.79
PTPN4-211ENST00000488279 ONECUT3O60422 494 aaPredicted RBP32.46■■■□□ 2.79
PTPN4-211ENST00000488279 NWD2Q9ULI1 1742 aa32.45■■■□□ 2.78
PTPN4-211ENST00000488279 CABP2Q9NPB3 220 aa32.43■■■□□ 2.78
PTPN4-211ENST00000488279 PRDM11Q9NQV5 511 aa32.43■■■□□ 2.78
PTPN4-211ENST00000488279 PLCH1Q4KWH8 1693 aa32.43■■■□□ 2.78
PTPN4-211ENST00000488279 NUTM2GQ5VZR2 741 aa32.41■■■□□ 2.78
PTPN4-211ENST00000488279 ABTB2Q8N961 1025 aa32.38■■■□□ 2.77
PTPN4-211ENST00000488279 PPIP5K1Q6PFW1 1433 aa32.36■■■□□ 2.77
PTPN4-211ENST00000488279 A0A0G2JS52 829 aa32.36■■■□□ 2.77
PTPN4-211ENST00000488279 MYT1Q01538 1121 aa32.36■■■□□ 2.77
PTPN4-211ENST00000488279 COL14A1Q05707 1796 aaKnown RBP32.36■■■□□ 2.77
PTPN4-211ENST00000488279 ROCK2O75116 1388 aaKnown RBP32.35■■■□□ 2.77
PTPN4-211ENST00000488279 FAM98CQ17RN3 349 aaKnown RBP32.35■■■□□ 2.77
PTPN4-211ENST00000488279 KRT27Q7Z3Y8 459 aa32.35■■■□□ 2.77
PTPN4-211ENST00000488279 KIAA0232Q92628 1395 aa32.34■■■□□ 2.77
PTPN4-211ENST00000488279 TOPAZ1Q8N9V7 1692 aa32.34■■■□□ 2.77
PTPN4-211ENST00000488279 ZC3H6P61129 1189 aaKnown RBP32.33■■■□□ 2.77
PTPN4-211ENST00000488279 CABP1Q9NZU7 370 aa32.33■■■□□ 2.77
PTPN4-211ENST00000488279 EVC2Q86UK5 1308 aa32.32■■■□□ 2.76
PTPN4-211ENST00000488279 CHRNA2Q15822 529 aa32.32■■■□□ 2.76
PTPN4-211ENST00000488279 SPATA31A5Q5VU36 1347 aa32.31■■■□□ 2.76
PTPN4-211ENST00000488279 SPATA31A7Q8IWB4 1347 aa32.31■■■□□ 2.76
PTPN4-211ENST00000488279 BLMP54132 1417 aaPredicted RBP32.29■■■□□ 2.76
PTPN4-211ENST00000488279 NLRP13Q86W25 1043 aa32.29■■■□□ 2.76
PTPN4-211ENST00000488279 NRAPQ86VF7 1730 aa32.29■■■□□ 2.76
PTPN4-211ENST00000488279 CRYBG1Q9Y4K1 1723 aa32.29■■■□□ 2.76
PTPN4-211ENST00000488279 SF3B2Q13435 895 aaKnown RBP32.28■■■□□ 2.76
PTPN4-211ENST00000488279 TRPM1Q7Z4N2 1603 aa32.28■■■□□ 2.76
PTPN4-211ENST00000488279 QRICH2Q9H0J4 1663 aa32.27■■■□□ 2.76
PTPN4-211ENST00000488279 BRD4O60885 1362 aaPredicted RBP32.27■■■□□ 2.76
PTPN4-211ENST00000488279 STRN4Q9NRL3 753 aa32.26■■■□□ 2.75
PTPN4-211ENST00000488279 ZRANB1Q9UGI0 708 aa32.26■■■□□ 2.75
PTPN4-211ENST00000488279 BRWD3Q6RI45 1802 aa32.25■■■□□ 2.75
PTPN4-211ENST00000488279 EVA1CP58658 441 aa32.24■■■□□ 2.75
PTPN4-211ENST00000488279 SRCAPQ6ZRS2 3230 aa32.24■■■□□ 2.75
PTPN4-211ENST00000488279 USP19O94966 1318 aa32.24■■■□□ 2.75
PTPN4-211ENST00000488279 GCP02774 474 aa32.22■■■□□ 2.75
PTPN4-211ENST00000488279 SPATA31A1Q5TZJ5 1347 aa32.22■■■□□ 2.75
PTPN4-211ENST00000488279 PHRF1Q9P1Y6 1649 aaKnown RBP32.21■■■□□ 2.75
PTPN4-211ENST00000488279 CPDO75976 1380 aa32.19■■■□□ 2.74
PTPN4-211ENST00000488279 USP6P35125 1406 aa32.19■■■□□ 2.74
PTPN4-211ENST00000488279 NLRP6P59044 892 aa32.19■■■□□ 2.74
PTPN4-211ENST00000488279 TRIM26Q12899 539 aaPredicted RBP32.19■■■□□ 2.74
PTPN4-211ENST00000488279 DEFB132Q7Z7B7 95 aa32.18■■■□□ 2.74
PTPN4-211ENST00000488279 ZNF692Q9BU19 519 aaPredicted RBP32.18■■■□□ 2.74
PTPN4-211ENST00000488279 CARD11Q9BXL7 1154 aa32.17■■■□□ 2.74
PTPN4-211ENST00000488279 TONSLQ96HA7 1378 aa32.17■■■□□ 2.74
PTPN4-211ENST00000488279 USP35Q9P2H5 1018 aa32.15■■■□□ 2.74
PTPN4-211ENST00000488279 NRKQ7Z2Y5 1582 aa32.13■■■□□ 2.73
PTPN4-211ENST00000488279 FAM182BQ5T319 152 aa32.12■■■□□ 2.73
PTPN4-211ENST00000488279 LARP1Q6PKG0 1096 aaKnown RBP32.12■■■□□ 2.73
PTPN4-211ENST00000488279 SSH2Q76I76 1423 aa32.11■■■□□ 2.73
PTPN4-211ENST00000488279 BARGINQ6ZT62 677 aa32.1■■■□□ 2.73
PTPN4-211ENST00000488279 CAMTA1Q9Y6Y1 1673 aa32.1■■■□□ 2.73
PTPN4-211ENST00000488279 BAG6P46379 1132 aa32.09■■■□□ 2.73
PTPN4-211ENST00000488279 TTC21BQ7Z4L5 1316 aa32.08■■■□□ 2.73
PTPN4-211ENST00000488279 ZBTB7CA1YPR0 619 aa32.08■■■□□ 2.73
PTPN4-211ENST00000488279 TCP11L2Q8N4U5 519 aa32.08■■■□□ 2.73
PTPN4-211ENST00000488279 SBNO2Q9Y2G9 1366 aa32.07■■■□□ 2.73
PTPN4-211ENST00000488279 THSD7AQ9UPZ6 1657 aa32.06■■■□□ 2.72
PTPN4-211ENST00000488279 THRAP3Q9Y2W1 955 aaKnown RBP32.05■■■□□ 2.72
PTPN4-211ENST00000488279 FAM196AQ6ZSG2 479 aa32.04■■■□□ 2.72
PTPN4-211ENST00000488279 TTC21AQ8NDW8 1320 aa32.03■■■□□ 2.72
PTPN4-211ENST00000488279 PDE3BQ13370 1112 aa32.03■■■□□ 2.72
PTPN4-211ENST00000488279 AATKQ6ZMQ8 1374 aa32.03■■■□□ 2.72
PTPN4-211ENST00000488279 KCNH5Q8NCM2 988 aa32.02■■■□□ 2.72
PTPN4-211ENST00000488279 KTN1Q86UP2 1357 aaKnown RBP32.02■■■□□ 2.72
PTPN4-211ENST00000488279 LMO7Q8WWI1 1683 aa32.02■■■□□ 2.72
PTPN4-211ENST00000488279 CPSF1Q10570 1443 aaKnown RBP32.01■■■□□ 2.72
PTPN4-211ENST00000488279 SLIT3O75094 1523 aa32■■■□□ 2.71
PTPN4-211ENST00000488279 COL5A2P05997 1499 aaPredicted RBP31.99■■■□□ 2.71
PTPN4-211ENST00000488279 EN1Q05925 392 aaPredicted RBP31.98■■■□□ 2.71
PTPN4-211ENST00000488279 TMC1Q8TDI8 760 aa31.98■■■□□ 2.71
PTPN4-211ENST00000488279 PIK3C2AO00443 1686 aa31.96■■■□□ 2.71
PTPN4-211ENST00000488279 ARHGEF25Q86VW2 580 aa31.96■■■□□ 2.71
PTPN4-211ENST00000488279 CRB1P82279 1406 aa31.95■■■□□ 2.71
PTPN4-211ENST00000488279 SOX12O15370 315 aa31.95■■■□□ 2.71
PTPN4-211ENST00000488279 TRIM37O94972 964 aa31.95■■■□□ 2.71
PTPN4-211ENST00000488279 TOM1L2Q6ZVM7 507 aa31.94■■■□□ 2.7
PTPN4-211ENST00000488279 SUGP2Q8IX01 1082 aaKnown RBP eCLIP31.94■■■□□ 2.7
PTPN4-211ENST00000488279 AXIN2Q9Y2T1 843 aa31.94■■■□□ 2.7
PTPN4-211ENST00000488279 HDGFL2Q7Z4V5 671 aaPredicted RBP31.93■■■□□ 2.7
PTPN4-211ENST00000488279 PUS7Q96PZ0 661 aaKnown RBP31.93■■■□□ 2.7
PTPN4-211ENST00000488279 SLC12A5Q9H2X9 1139 aa31.93■■■□□ 2.7
PTPN4-211ENST00000488279 AKAP12Q02952 1782 aa31.91■■■□□ 2.7
PTPN4-211ENST00000488279 SLC24A1O60721 1099 aa31.89■■■□□ 2.7
PTPN4-211ENST00000488279 TERF2IPQ9NYB0 399 aa31.89■■■□□ 2.7
PTPN4-211ENST00000488279 WDR17Q8IZU2 1322 aa31.89■■■□□ 2.7
PTPN4-211ENST00000488279 RGPD1P0DJD0 1748 aa31.89■■■□□ 2.69
PTPN4-211ENST00000488279 ST20-MTHFSA0A0A6YYL1 179 aa31.88■■■□□ 2.69
PTPN4-211ENST00000488279 APBA3O96018 575 aa31.88■■■□□ 2.69
PTPN4-211ENST00000488279 DISP2A7MBM2 1401 aa31.88■■■□□ 2.69
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms