RNA–Protein interactions for RNA: ENST00000488058.1

RNF38-208, Transcript of ring finger protein 38, human

TSL 3

Gene RNF38, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF38-208	ENST00000488058	PLEKHG3	A1L390	1219 aa		33.73	■■■□□ 2.99
RNF38-208	ENST00000488058	CDK12	Q9NYV4	1490 aa	Predicted RBP	33.71	■■■□□ 2.99
RNF38-208	ENST00000488058	BCL9L	Q86UU0	1499 aa		33.7	■■■□□ 2.99
RNF38-208	ENST00000488058	ATRN	O75882	1429 aa		33.69	■■■□□ 2.98
RNF38-208	ENST00000488058	RGS12	O14924	1447 aa		33.67	■■■□□ 2.98
RNF38-208	ENST00000488058	PLCH1	Q4KWH8	1693 aa		33.67	■■■□□ 2.98
RNF38-208	ENST00000488058	SLIT2	O94813	1529 aa		33.66	■■■□□ 2.98
RNF38-208	ENST00000488058	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	33.66	■■■□□ 2.98
RNF38-208	ENST00000488058	CABP1	Q9NZU7	370 aa		33.66	■■■□□ 2.98
RNF38-208	ENST00000488058	NUTM2G	Q5VZR2	741 aa		33.65	■■■□□ 2.98
RNF38-208	ENST00000488058	CRYBG1	Q9Y4K1	1723 aa		33.65	■■■□□ 2.98
RNF38-208	ENST00000488058	UNC5CL	Q8IV45	518 aa		33.64	■■■□□ 2.98
RNF38-208	ENST00000488058	NWD2	Q9ULI1	1742 aa		33.6	■■■□□ 2.97
RNF38-208	ENST00000488058	FAM83G	A6ND36	823 aa		33.59	■■■□□ 2.97
RNF38-208	ENST00000488058	PHRF1	Q9P1Y6	1649 aa	Known RBP	33.59	■■■□□ 2.97
RNF38-208	ENST00000488058	ABTB2	Q8N961	1025 aa		33.58	■■■□□ 2.97
RNF38-208	ENST00000488058	GJD4	Q96KN9	370 aa	Predicted RBP	33.58	■■■□□ 2.97
RNF38-208	ENST00000488058	SBNO2	Q9Y2G9	1366 aa		33.58	■■■□□ 2.97
RNF38-208	ENST00000488058	COL14A1	Q05707	1796 aa	Known RBP	33.56	■■■□□ 2.96
RNF38-208	ENST00000488058	CCDC9	Q9Y3X0	531 aa	Known RBP	33.55	■■■□□ 2.96
RNF38-208	ENST00000488058	ATAD2	Q6PL18	1390 aa		33.55	■■■□□ 2.96
RNF38-208	ENST00000488058	CLSPN	Q9HAW4	1339 aa		33.54	■■■□□ 2.96
RNF38-208	ENST00000488058	USP6	P35125	1406 aa		33.54	■■■□□ 2.96
RNF38-208	ENST00000488058	PRDM11	Q9NQV5	511 aa		33.53	■■■□□ 2.96
RNF38-208	ENST00000488058	GLI3	P10071	1580 aa		33.51	■■■□□ 2.96
RNF38-208	ENST00000488058	BTG4	Q9NY30	223 aa		33.51	■■■□□ 2.95
RNF38-208	ENST00000488058	BRD4	O60885	1362 aa	Predicted RBP	33.5	■■■□□ 2.95
RNF38-208	ENST00000488058	CCER1	Q8TC90	406 aa	Predicted RBP	33.5	■■■□□ 2.95
RNF38-208	ENST00000488058	NRAP	Q86VF7	1730 aa		33.5	■■■□□ 2.95
RNF38-208	ENST00000488058	AKAP12	Q02952	1782 aa		33.49	■■■□□ 2.95
RNF38-208	ENST00000488058	ZC3H6	P61129	1189 aa	Known RBP	33.49	■■■□□ 2.95
RNF38-208	ENST00000488058	VPS72	Q15906	364 aa		33.49	■■■□□ 2.95
RNF38-208	ENST00000488058	KIAA0232	Q92628	1395 aa		33.48	■■■□□ 2.95
RNF38-208	ENST00000488058	NLRP13	Q86W25	1043 aa		33.48	■■■□□ 2.95
RNF38-208	ENST00000488058	ST20-MTHFS	A0A0A6YYL1	179 aa		33.47	■■■□□ 2.95
RNF38-208	ENST00000488058	UPF1	Q92900	1129 aa	Known RBP eCLIP	33.47	■■■□□ 2.95
RNF38-208	ENST00000488058	NRK	Q7Z2Y5	1582 aa		33.47	■■■□□ 2.95
RNF38-208	ENST00000488058	CHRNA2	Q15822	529 aa		33.46	■■■□□ 2.95
RNF38-208	ENST00000488058	TIMELESS	Q9UNS1	1208 aa		33.45	■■■□□ 2.95
RNF38-208	ENST00000488058	TMC1	Q8TDI8	760 aa		33.44	■■■□□ 2.94
RNF38-208	ENST00000488058	ZNF692	Q9BU19	519 aa	Predicted RBP	33.44	■■■□□ 2.94
RNF38-208	ENST00000488058	USP19	O94966	1318 aa		33.44	■■■□□ 2.94
RNF38-208	ENST00000488058	NLRP6	P59044	892 aa		33.43	■■■□□ 2.94
RNF38-208	ENST00000488058	PIK3C2A	O00443	1686 aa		33.42	■■■□□ 2.94
RNF38-208	ENST00000488058	KTN1	Q86UP2	1357 aa	Known RBP	33.41	■■■□□ 2.94
RNF38-208	ENST00000488058	SSH2	Q76I76	1423 aa		33.41	■■■□□ 2.94
RNF38-208	ENST00000488058	USP47	Q96K76	1375 aa		33.4	■■■□□ 2.94
RNF38-208	ENST00000488058	CPSF1	Q10570	1443 aa	Known RBP	33.39	■■■□□ 2.94
RNF38-208	ENST00000488058	TTC21B	Q7Z4L5	1316 aa		33.39	■■■□□ 2.94
RNF38-208	ENST00000488058	TESK2	Q96S53	571 aa		33.39	■■■□□ 2.94
RNF38-208	ENST00000488058	MON2	Q7Z3U7	1717 aa		33.39	■■■□□ 2.94
RNF38-208	ENST00000488058	GC	P02774	474 aa		33.38	■■■□□ 2.93
RNF38-208	ENST00000488058	ZBTB7C	A1YPR0	619 aa		33.37	■■■□□ 2.93
RNF38-208	ENST00000488058	STRN4	Q9NRL3	753 aa		33.37	■■■□□ 2.93
RNF38-208	ENST00000488058		A0A0G2JS52	829 aa		33.36	■■■□□ 2.93
RNF38-208	ENST00000488058	MYT1	Q01538	1121 aa		33.36	■■■□□ 2.93
RNF38-208	ENST00000488058	SLC12A5	Q9H2X9	1139 aa		33.35	■■■□□ 2.93
RNF38-208	ENST00000488058	BRWD3	Q6RI45	1802 aa		33.35	■■■□□ 2.93
RNF38-208	ENST00000488058	TTC21A	Q8NDW8	1320 aa		33.34	■■■□□ 2.93
RNF38-208	ENST00000488058	SEPT12	Q8IYM1	358 aa		33.34	■■■□□ 2.93
RNF38-208	ENST00000488058	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	33.33	■■■□□ 2.93
RNF38-208	ENST00000488058	CPD	O75976	1380 aa		33.33	■■■□□ 2.93
RNF38-208	ENST00000488058	SLIT3	O75094	1523 aa		33.33	■■■□□ 2.93
RNF38-208	ENST00000488058	CD163L1	Q9NR16	1453 aa		33.31	■■■□□ 2.92
RNF38-208	ENST00000488058	SLC24A1	O60721	1099 aa		33.31	■■■□□ 2.92
RNF38-208	ENST00000488058	FAM98C	Q17RN3	349 aa	Known RBP	33.31	■■■□□ 2.92
RNF38-208	ENST00000488058	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	33.31	■■■□□ 2.92
RNF38-208	ENST00000488058	PUS7	Q96PZ0	661 aa	Known RBP	33.31	■■■□□ 2.92
RNF38-208	ENST00000488058	EVA1C	P58658	441 aa		33.3	■■■□□ 2.92
RNF38-208	ENST00000488058	SPATA31A5	Q5VU36	1347 aa		33.29	■■■□□ 2.92
RNF38-208	ENST00000488058	SPATA31A7	Q8IWB4	1347 aa		33.29	■■■□□ 2.92
RNF38-208	ENST00000488058	SOX12	O15370	315 aa		33.29	■■■□□ 2.92
RNF38-208	ENST00000488058	TMF1	P82094	1093 aa		33.28	■■■□□ 2.92
RNF38-208	ENST00000488058	TERF2IP	Q9NYB0	399 aa		33.28	■■■□□ 2.92
RNF38-208	ENST00000488058	LMO7	Q8WWI1	1683 aa		33.28	■■■□□ 2.92
RNF38-208	ENST00000488058	CAMTA1	Q9Y6Y1	1673 aa		33.28	■■■□□ 2.92
RNF38-208	ENST00000488058	ONECUT3	O60422	494 aa	Predicted RBP	33.26	■■■□□ 2.91
RNF38-208	ENST00000488058		A0A1W2PP64	1363 aa		33.25	■■■□□ 2.91
RNF38-208	ENST00000488058	USP35	Q9P2H5	1018 aa		33.23	■■■□□ 2.91
RNF38-208	ENST00000488058	ZRANB1	Q9UGI0	708 aa		33.23	■■■□□ 2.91
RNF38-208	ENST00000488058	SPATA31A1	Q5TZJ5	1347 aa		33.23	■■■□□ 2.91
RNF38-208	ENST00000488058	NME9	Q86XW9	330 aa		33.22	■■■□□ 2.91
RNF38-208	ENST00000488058	KCNH5	Q8NCM2	988 aa		33.22	■■■□□ 2.91
RNF38-208	ENST00000488058	NINL	Q9Y2I6	1382 aa		33.21	■■■□□ 2.91
RNF38-208	ENST00000488058	EDC4	Q6P2E9	1401 aa	Known RBP	33.21	■■■□□ 2.91
RNF38-208	ENST00000488058	KRT27	Q7Z3Y8	459 aa		33.21	■■■□□ 2.91
RNF38-208	ENST00000488058	LARP1	Q6PKG0	1096 aa	Known RBP	33.2	■■■□□ 2.91
RNF38-208	ENST00000488058	AATK	Q6ZMQ8	1374 aa		33.18	■■■□□ 2.9
RNF38-208	ENST00000488058	COL5A2	P05997	1499 aa	Predicted RBP	33.18	■■■□□ 2.9
RNF38-208	ENST00000488058	THSD7A	Q9UPZ6	1657 aa		33.17	■■■□□ 2.9
RNF38-208	ENST00000488058	USP31	Q70CQ4	1352 aa		33.16	■■■□□ 2.9
RNF38-208	ENST00000488058	COL18A1	P39060	1754 aa		33.15	■■■□□ 2.9
RNF38-208	ENST00000488058	USP54	Q70EL1	1684 aa		33.15	■■■□□ 2.9
RNF38-208	ENST00000488058	NFAT5	O94916	1531 aa		33.14	■■■□□ 2.9
RNF38-208	ENST00000488058	CDCA8	Q53HL2	280 aa		33.14	■■■□□ 2.9
RNF38-208	ENST00000488058	ARHGEF25	Q86VW2	580 aa		33.13	■■■□□ 2.89
RNF38-208	ENST00000488058	RGPD5	Q99666	1765 aa		33.12	■■■□□ 2.89
RNF38-208	ENST00000488058	ANKRD36B	Q8N2N9	1353 aa		33.1	■■■□□ 2.89
RNF38-208	ENST00000488058	TCP11L2	Q8N4U5	519 aa		33.1	■■■□□ 2.89
RNF38-208	ENST00000488058	CCDC125	Q86Z20	511 aa		33.09	■■■□□ 2.89

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