RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 NNTQ13423 1086 aa9.94□□□□□ -0.82
SMC4-220ENST00000488017 PCDHGC3Q9UN70 934 aa9.94□□□□□ -0.82
SMC4-220ENST00000488017 TLL2Q9Y6L7 1015 aa9.94□□□□□ -0.82
SMC4-220ENST00000488017 C6orf229H3BNL8 230 aa9.93□□□□□ -0.82
SMC4-220ENST00000488017 PTPRNQ16849 979 aa9.93□□□□□ -0.82
SMC4-220ENST00000488017 DNMT3AQ9Y6K1 912 aaPredicted RBP9.93□□□□□ -0.82
SMC4-220ENST00000488017 ADH1CP00326 375 aa9.92□□□□□ -0.82
SMC4-220ENST00000488017 XP32Q5T750 250 aa9.92□□□□□ -0.82
SMC4-220ENST00000488017 WDR4P57081 412 aaKnown RBP9.91□□□□□ -0.82
SMC4-220ENST00000488017 GPAT2Q6NUI2 795 aa9.91□□□□□ -0.82
SMC4-220ENST00000488017 KLF16Q9BXK1 252 aaPredicted RBP9.91□□□□□ -0.82
SMC4-220ENST00000488017 EVA1BQ9NVM1 165 aa9.91□□□□□ -0.82
SMC4-220ENST00000488017 MAN1A2O60476 641 aa9.9□□□□□ -0.82
SMC4-220ENST00000488017 KRT76Q01546 638 aa9.9□□□□□ -0.82
SMC4-220ENST00000488017 UNC93B1Q9H1C4 597 aa9.9□□□□□ -0.82
SMC4-220ENST00000488017 VARSP26640 1264 aaKnown RBP9.89□□□□□ -0.83
SMC4-220ENST00000488017 SSTR3P32745 418 aaPredicted RBP9.89□□□□□ -0.83
SMC4-220ENST00000488017 SPIRE2Q8WWL2 714 aa9.89□□□□□ -0.83
SMC4-220ENST00000488017 SPDYE5A6NIY4 337 aa9.88□□□□□ -0.83
SMC4-220ENST00000488017 KCNH2Q12809 1159 aa9.88□□□□□ -0.83
SMC4-220ENST00000488017 DESI1Q6ICB0 168 aa9.88□□□□□ -0.83
SMC4-220ENST00000488017 VSIG10Q8N0Z9 540 aa9.88□□□□□ -0.83
SMC4-220ENST00000488017 FOXK2Q01167 660 aa9.87□□□□□ -0.83
SMC4-220ENST00000488017 BAP1Q92560 729 aa9.86□□□□□ -0.83
SMC4-220ENST00000488017 CNTNAP3BQ96NU0 1288 aa9.86□□□□□ -0.83
SMC4-220ENST00000488017 CNTNAP3Q9BZ76 1288 aa9.86□□□□□ -0.83
SMC4-220ENST00000488017 GPR161Q8N6U8 529 aaKnown RBP9.85□□□□□ -0.83
SMC4-220ENST00000488017 ZNF511Q8NB15 262 aa9.85□□□□□ -0.83
SMC4-220ENST00000488017 PRR7Q8TB68 274 aa9.85□□□□□ -0.83
SMC4-220ENST00000488017 MOXD2PA6NHM9 499 aa9.84□□□□□ -0.83
SMC4-220ENST00000488017 NDUFV2P19404 249 aa9.84□□□□□ -0.83
SMC4-220ENST00000488017 MTMR2Q13614 643 aa9.84□□□□□ -0.83
SMC4-220ENST00000488017 LINC01559Q495D7 138 aa9.84□□□□□ -0.83
SMC4-220ENST00000488017 IRS1P35568 1242 aa9.83□□□□□ -0.84
SMC4-220ENST00000488017 GJA5P36382 358 aa9.83□□□□□ -0.84
SMC4-220ENST00000488017 ZNF385CQ66K41 422 aaPredicted RBP9.83□□□□□ -0.84
SMC4-220ENST00000488017 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.83□□□□□ -0.84
SMC4-220ENST00000488017 C6orf118Q5T5N4 469 aa9.82□□□□□ -0.84
SMC4-220ENST00000488017 KANK3Q6NY19 840 aa9.82□□□□□ -0.84
SMC4-220ENST00000488017 AMHR2Q16671 573 aa9.81□□□□□ -0.84
SMC4-220ENST00000488017 ZIC2O95409 532 aaPredicted RBP9.8□□□□□ -0.84
SMC4-220ENST00000488017 TTLL12Q14166 644 aaPredicted RBP9.8□□□□□ -0.84
SMC4-220ENST00000488017 ZFAND3Q9H8U3 227 aa9.8□□□□□ -0.84
SMC4-220ENST00000488017 DIXDC1Q155Q3 683 aa9.79□□□□□ -0.84
SMC4-220ENST00000488017 BARGINQ6ZT62 677 aa9.79□□□□□ -0.84
SMC4-220ENST00000488017 SVOPQ8N4V2 548 aa9.79□□□□□ -0.84
SMC4-220ENST00000488017 FAM174AQ8TBP5 190 aa9.79□□□□□ -0.84
SMC4-220ENST00000488017 CDK15Q96Q40 435 aa9.79□□□□□ -0.84
SMC4-220ENST00000488017 COL25A1Q9BXS0 654 aaPredicted RBP9.79□□□□□ -0.84
SMC4-220ENST00000488017 KRTAP4-8Q9BYQ9 185 aa9.79□□□□□ -0.84
SMC4-220ENST00000488017 ARHGEF15O94989 841 aa9.78□□□□□ -0.84
SMC4-220ENST00000488017 BMP2P12643 396 aa9.78□□□□□ -0.84
SMC4-220ENST00000488017 LYPD8Q6UX82 237 aa9.78□□□□□ -0.84
SMC4-220ENST00000488017 DNMT3LQ9UJW3 386 aa9.78□□□□□ -0.84
SMC4-220ENST00000488017 SOS2Q07890 1332 aaPredicted RBP9.78□□□□□ -0.84
SMC4-220ENST00000488017 UPP2O95045 317 aa9.77□□□□□ -0.85
SMC4-220ENST00000488017 GIGYF2Q6Y7W6 1299 aaKnown RBP9.77□□□□□ -0.85
SMC4-220ENST00000488017 NANOS1Q8WY41 292 aaKnown RBP9.77□□□□□ -0.85
SMC4-220ENST00000488017 ITPKCQ96DU7 683 aa9.77□□□□□ -0.85
SMC4-220ENST00000488017 SLURP2P0DP57 97 aa9.76□□□□□ -0.85
SMC4-220ENST00000488017 CTHP32929 405 aa9.76□□□□□ -0.85
SMC4-220ENST00000488017 BEGAINQ9BUH8 593 aa9.76□□□□□ -0.85
SMC4-220ENST00000488017 ADAM23O75077 832 aa9.75□□□□□ -0.85
SMC4-220ENST00000488017 ZMYND10O75800 440 aa9.75□□□□□ -0.85
SMC4-220ENST00000488017 NR5A1Q13285 461 aa9.75□□□□□ -0.85
SMC4-220ENST00000488017 RSBN1LQ6PCB5 846 aaPredicted RBP9.75□□□□□ -0.85
SMC4-220ENST00000488017 LINC00528Q8N1L1 170 aa9.75□□□□□ -0.85
SMC4-220ENST00000488017 MARSP56192 900 aaKnown RBP9.74□□□□□ -0.85
SMC4-220ENST00000488017 RNFT1Q5M7Z0 435 aa9.74□□□□□ -0.85
SMC4-220ENST00000488017 MEIOBQ8N635 442 aa9.74□□□□□ -0.85
SMC4-220ENST00000488017 WHAMMQ8TF30 809 aa9.74□□□□□ -0.85
SMC4-220ENST00000488017 SCARF2Q96GP6 870 aaPredicted RBP9.74□□□□□ -0.85
SMC4-220ENST00000488017 TBC1D2Q9BYX2 928 aa9.74□□□□□ -0.85
SMC4-220ENST00000488017 SPTLC1O15269 473 aa9.72□□□□□ -0.85
SMC4-220ENST00000488017 F12P00748 615 aaPredicted RBP9.72□□□□□ -0.85
SMC4-220ENST00000488017 NR3C2P08235 984 aa9.72□□□□□ -0.85
SMC4-220ENST00000488017 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.72□□□□□ -0.85
SMC4-220ENST00000488017 PRPF38BQ5VTL8 546 aaKnown RBP9.72□□□□□ -0.85
SMC4-220ENST00000488017 ZBTB3Q9H5J0 574 aa9.72□□□□□ -0.85
SMC4-220ENST00000488017 CFAP99D6REC4 459 aa9.71□□□□□ -0.86
SMC4-220ENST00000488017 PTSQ03393 145 aa9.7□□□□□ -0.86
SMC4-220ENST00000488017 ARID5BQ14865 1188 aa9.7□□□□□ -0.86
SMC4-220ENST00000488017 FOXJ1Q92949 421 aa9.7□□□□□ -0.86
SMC4-220ENST00000488017 PCDHB15Q9Y5E8 787 aa9.7□□□□□ -0.86
SMC4-220ENST00000488017 HRCP23327 699 aa9.69□□□□□ -0.86
SMC4-220ENST00000488017 GRM5P41594 1212 aa9.69□□□□□ -0.86
SMC4-220ENST00000488017 MAP10Q9P2G4 905 aa9.69□□□□□ -0.86
SMC4-220ENST00000488017 BPHLQ86WA6 291 aaPredicted RBP9.68□□□□□ -0.86
SMC4-220ENST00000488017 MSTNO14793 375 aa9.67□□□□□ -0.86
SMC4-220ENST00000488017 ZC3H15Q8WU90 426 aaKnown RBP9.67□□□□□ -0.86
SMC4-220ENST00000488017 TSEN34Q9BSV6 310 aaKnown RBP9.67□□□□□ -0.86
SMC4-220ENST00000488017 AGERQ15109 404 aa9.66□□□□□ -0.86
SMC4-220ENST00000488017 RIC3Q7Z5B4 369 aa9.66□□□□□ -0.86
SMC4-220ENST00000488017 PARP9Q8IXQ6 854 aa9.66□□□□□ -0.86
SMC4-220ENST00000488017 CCDC155Q8N6L0 562 aa9.66□□□□□ -0.86
SMC4-220ENST00000488017 ARMC2Q8NEN0 867 aa9.66□□□□□ -0.86
SMC4-220ENST00000488017 TTLL8A6PVC2 850 aa9.65□□□□□ -0.86
SMC4-220ENST00000488017 C4orf48Q5BLP8 95 aa9.65□□□□□ -0.86
SMC4-220ENST00000488017 SPOCK3Q9BQ16 436 aa9.64□□□□□ -0.87
SMC4-220ENST00000488017 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms