RNA–Protein interactions for RNA: ENST00000487747.5

SMC4-219, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 637 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-219ENST00000487747 LILRB3O75022 631 aa10.94□□□□□ -0.66
SMC4-219ENST00000487747 CTHP32929 405 aa10.94□□□□□ -0.66
SMC4-219ENST00000487747 POLR3EQ9NVU0 708 aa10.94□□□□□ -0.66
SMC4-219ENST00000487747 F12P00748 615 aaPredicted RBP10.93□□□□□ -0.66
SMC4-219ENST00000487747 RTL5Q5HYW3 569 aaPredicted RBP10.93□□□□□ -0.66
SMC4-219ENST00000487747 ZNF511Q8NB15 262 aa10.92□□□□□ -0.66
SMC4-219ENST00000487747 TSC1Q92574 1164 aa10.92□□□□□ -0.66
SMC4-219ENST00000487747 NUTM2BA6NNL0 878 aaPredicted RBP10.91□□□□□ -0.66
SMC4-219ENST00000487747 NUTM2EB1AL46 878 aaPredicted RBP10.91□□□□□ -0.66
SMC4-219ENST00000487747 NUTM2DQ5VT03 806 aaPredicted RBP10.91□□□□□ -0.66
SMC4-219ENST00000487747 NUTM2AQ8IVF1 878 aaPredicted RBP10.91□□□□□ -0.66
SMC4-219ENST00000487747 CLK2P49760 499 aaKnown RBP10.9□□□□□ -0.66
SMC4-219ENST00000487747 TUSC1Q2TAM9 212 aa10.9□□□□□ -0.66
SMC4-219ENST00000487747 FBXO31Q5XUX0 539 aaPredicted RBP10.9□□□□□ -0.66
SMC4-219ENST00000487747 ATP13A2Q9NQ11 1180 aa10.9□□□□□ -0.66
SMC4-219ENST00000487747 TLL2Q9Y6L7 1015 aa10.9□□□□□ -0.66
SMC4-219ENST00000487747 FAM117AQ9C073 453 aa10.89□□□□□ -0.67
SMC4-219ENST00000487747 FOXJ1Q92949 421 aa10.88□□□□□ -0.67
SMC4-219ENST00000487747 KDM4CQ9H3R0 1056 aa10.88□□□□□ -0.67
SMC4-219ENST00000487747 C11orf95C9JLR9 678 aaPredicted RBP10.87□□□□□ -0.67
SMC4-219ENST00000487747 SNRPBP14678 240 aaKnown RBP10.85□□□□□ -0.67
SMC4-219ENST00000487747 RSPH6AQ9H0K4 717 aa10.85□□□□□ -0.67
SMC4-219ENST00000487747 WASF2Q9Y6W5 498 aa10.85□□□□□ -0.67
SMC4-219ENST00000487747 VARSP26640 1264 aaKnown RBP10.84□□□□□ -0.67
SMC4-219ENST00000487747 C4orf48Q5BLP8 95 aa10.84□□□□□ -0.67
SMC4-219ENST00000487747 PROCA1Q8NCQ7 364 aaPredicted RBP10.84□□□□□ -0.67
SMC4-219ENST00000487747 PLEKHG3A1L390 1219 aa10.83□□□□□ -0.68
SMC4-219ENST00000487747 BMP1P13497 986 aa10.82□□□□□ -0.68
SMC4-219ENST00000487747 CTDSPL2Q05D32 466 aa10.82□□□□□ -0.68
SMC4-219ENST00000487747 SKIV2LQ15477 1246 aaKnown RBP10.8□□□□□ -0.68
SMC4-219ENST00000487747 LCE2AQ5TA79 106 aaPredicted RBP10.8□□□□□ -0.68
SMC4-219ENST00000487747 TRIM46Q7Z4K8 759 aa10.8□□□□□ -0.68
SMC4-219ENST00000487747 CAPN5O15484 640 aaPredicted RBP10.79□□□□□ -0.68
SMC4-219ENST00000487747 HELBQ8NG08 1087 aaPredicted RBP10.79□□□□□ -0.68
SMC4-219ENST00000487747 TRIM47Q96LD4 638 aa10.79□□□□□ -0.68
SMC4-219ENST00000487747 NNTQ13423 1086 aa10.78□□□□□ -0.68
SMC4-219ENST00000487747 SH3D19Q5HYK7 790 aa10.78□□□□□ -0.68
SMC4-219ENST00000487747 MPNDQ8N594 471 aa10.78□□□□□ -0.68
SMC4-219ENST00000487747 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.78□□□□□ -0.68
SMC4-219ENST00000487747 ARID5BQ14865 1188 aa10.77□□□□□ -0.69
SMC4-219ENST00000487747 AGERQ15109 404 aa10.77□□□□□ -0.69
SMC4-219ENST00000487747 TREML4Q6UXN2 200 aa10.77□□□□□ -0.69
SMC4-219ENST00000487747 FAM174AQ8TBP5 190 aa10.77□□□□□ -0.69
SMC4-219ENST00000487747 LRRN4Q8WUT4 740 aa10.77□□□□□ -0.69
SMC4-219ENST00000487747 CDK15Q96Q40 435 aa10.76□□□□□ -0.69
SMC4-219ENST00000487747 SH3RF1Q7Z6J0 888 aa10.75□□□□□ -0.69
SMC4-219ENST00000487747 DDRGK1Q96HY6 314 aa10.75□□□□□ -0.69
SMC4-219ENST00000487747 KLF16Q9BXK1 252 aaPredicted RBP10.75□□□□□ -0.69
SMC4-219ENST00000487747 SENP2Q9HC62 589 aa10.75□□□□□ -0.69
SMC4-219ENST00000487747 ADH1CP00326 375 aa10.74□□□□□ -0.69
SMC4-219ENST00000487747 NR3C2P08235 984 aa10.74□□□□□ -0.69
SMC4-219ENST00000487747 GRM5P41594 1212 aa10.74□□□□□ -0.69
SMC4-219ENST00000487747 TIMP2P16035 220 aa10.73□□□□□ -0.69
SMC4-219ENST00000487747 NFX1Q12986 1120 aaKnown RBP10.73□□□□□ -0.69
SMC4-219ENST00000487747 BPHLQ86WA6 291 aaPredicted RBP10.73□□□□□ -0.69
SMC4-219ENST00000487747 WDR4P57081 412 aaKnown RBP10.72□□□□□ -0.69
SMC4-219ENST00000487747 LCE2CQ5TA81 110 aa10.72□□□□□ -0.69
SMC4-219ENST00000487747 PPP2R2DQ66LE6 453 aa10.72□□□□□ -0.69
SMC4-219ENST00000487747 SH3BP5LQ7L8J4 393 aa10.72□□□□□ -0.69
SMC4-219ENST00000487747 ATP1B4Q9UN42 357 aaPredicted RBP10.72□□□□□ -0.69
SMC4-219ENST00000487747 ARMC2Q8NEN0 867 aa10.71□□□□□ -0.69
SMC4-219ENST00000487747 C1QTNF2Q9BXJ5 285 aa10.71□□□□□ -0.69
SMC4-219ENST00000487747 MAGEB6P1A0A0J9YX57 407 aa10.7□□□□□ -0.7
SMC4-219ENST00000487747 NR6A1Q15406 480 aa10.7□□□□□ -0.7
SMC4-219ENST00000487747 KIFC2Q96AC6 838 aa10.7□□□□□ -0.7
SMC4-219ENST00000487747 ZFP42Q96MM3 310 aa10.7□□□□□ -0.7
SMC4-219ENST00000487747 ZFAND3Q9H8U3 227 aa10.7□□□□□ -0.7
SMC4-219ENST00000487747 WFS1O76024 890 aa10.69□□□□□ -0.7
SMC4-219ENST00000487747 NBPF14Q5TI25 921 aa10.69□□□□□ -0.7
SMC4-219ENST00000487747 EPS8L1Q8TE68 723 aa10.69□□□□□ -0.7
SMC4-219ENST00000487747 ITPKCQ96DU7 683 aa10.69□□□□□ -0.7
SMC4-219ENST00000487747 CARD14Q9BXL6 1004 aa10.69□□□□□ -0.7
SMC4-219ENST00000487747 AP1G2O75843 785 aa10.68□□□□□ -0.7
SMC4-219ENST00000487747 ZIC2O95409 532 aaPredicted RBP10.67□□□□□ -0.7
SMC4-219ENST00000487747 HMX1Q9NP08 348 aaPredicted RBP10.67□□□□□ -0.7
SMC4-219ENST00000487747 TERTO14746 1132 aaKnown RBP10.66□□□□□ -0.7
SMC4-219ENST00000487747 NR5A1Q13285 461 aa10.66□□□□□ -0.7
SMC4-219ENST00000487747 ERFEQ4G0M1 354 aa10.66□□□□□ -0.7
SMC4-219ENST00000487747 MRPL14Q6P1L8 145 aaKnown RBP10.66□□□□□ -0.7
SMC4-219ENST00000487747 NEUROD2Q15784 382 aa10.65□□□□□ -0.7
SMC4-219ENST00000487747 TRMT44Q8IYL2 757 aaKnown RBP10.65□□□□□ -0.7
SMC4-219ENST00000487747 PURBQ96QR8 312 aaKnown RBP10.65□□□□□ -0.7
SMC4-219ENST00000487747 OCSTAMPQ9BR26 566 aa10.65□□□□□ -0.7
SMC4-219ENST00000487747 FKBPLQ9UIM3 349 aa10.65□□□□□ -0.7
SMC4-219ENST00000487747 FSHRP23945 695 aa10.64□□□□□ -0.71
SMC4-219ENST00000487747 IL27Q8NEV9 243 aa10.64□□□□□ -0.71
SMC4-219ENST00000487747 SOBPA7XYQ1 873 aa10.63□□□□□ -0.71
SMC4-219ENST00000487747 RFC5P40937 340 aa10.63□□□□□ -0.71
SMC4-219ENST00000487747 VASH1Q7L8A9 365 aaPredicted RBP10.63□□□□□ -0.71
SMC4-219ENST00000487747 GPKOWQ92917 476 aaPredicted RBP eCLIP10.63□□□□□ -0.711e-13■□□□□ 9.1
SMC4-219ENST00000487747 PDXDC2PQ6P474 469 aa10.62□□□□□ -0.71
SMC4-219ENST00000487747 MAP4K5Q9Y4K4 846 aa10.62□□□□□ -0.71
SMC4-219ENST00000487747 USP17L8P0C7I0 530 aa10.61□□□□□ -0.71
SMC4-219ENST00000487747 VEGFBP49765 207 aa10.61□□□□□ -0.71
SMC4-219ENST00000487747 ARHGAP9Q9BRR9 750 aa10.61□□□□□ -0.71
SMC4-219ENST00000487747 BRPF1P55201 1214 aaPredicted RBP10.6□□□□□ -0.71
SMC4-219ENST00000487747 C6orf118Q5T5N4 469 aa10.59□□□□□ -0.71
SMC4-219ENST00000487747 NXF1Q9UBU9 619 aaKnown RBP10.59□□□□□ -0.71
SMC4-219ENST00000487747 SCARF1Q14162 830 aa10.58□□□□□ -0.72
SMC4-219ENST00000487747 CCDC116Q8IYX3 515 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms