RNA–Protein interactions for RNA: ENST00000487461.1

VPS16-208, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS16, Length 634 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-208ENST00000487461 PLEKHG3A1L390 1219 aa17.65■□□□□ 0.42
VPS16-208ENST00000487461 ACEP12821 1306 aa17.65■□□□□ 0.42
VPS16-208ENST00000487461 FAM98CQ17RN3 349 aaKnown RBP17.64■□□□□ 0.41
VPS16-208ENST00000487461 NUTM2GQ5VZR2 741 aa17.64■□□□□ 0.41
VPS16-208ENST00000487461 KRT27Q7Z3Y8 459 aa17.64■□□□□ 0.41
VPS16-208ENST00000487461 L3MBTL2Q969R5 705 aa17.64■□□□□ 0.41
VPS16-208ENST00000487461 SIN3AQ96ST3 1273 aa17.64■□□□□ 0.41
VPS16-208ENST00000487461 ZRANB1Q9UGI0 708 aa17.64■□□□□ 0.41
VPS16-208ENST00000487461 EP400Q96L91 3159 aa17.63■□□□□ 0.41
VPS16-208ENST00000487461 KIAA1210Q9ULL0 1709 aa17.63■□□□□ 0.41
VPS16-208ENST00000487461 POLR3AO14802 1390 aaPredicted RBP17.63■□□□□ 0.41
VPS16-208ENST00000487461 PRDM11Q9NQV5 511 aa17.62■□□□□ 0.41
VPS16-208ENST00000487461 BRWD3Q6RI45 1802 aa17.62■□□□□ 0.41
VPS16-208ENST00000487461 BLMP54132 1417 aaPredicted RBP17.62■□□□□ 0.41
VPS16-208ENST00000487461 A0A0G2JS52 829 aa17.61■□□□□ 0.41
VPS16-208ENST00000487461 MYT1Q01538 1121 aa17.61■□□□□ 0.41
VPS16-208ENST00000487461 DEFB132Q7Z7B7 95 aa17.61■□□□□ 0.41
VPS16-208ENST00000487461 CABP2Q9NPB3 220 aa17.61■□□□□ 0.41
VPS16-208ENST00000487461 SPATA31A5Q5VU36 1347 aa17.61■□□□□ 0.41
VPS16-208ENST00000487461 SPATA31A7Q8IWB4 1347 aa17.61■□□□□ 0.41
VPS16-208ENST00000487461 CENPJQ9HC77 1338 aaPredicted RBP17.61■□□□□ 0.41
VPS16-208ENST00000487461 SRCAPQ6ZRS2 3230 aa17.6■□□□□ 0.41
VPS16-208ENST00000487461 ZC3H6P61129 1189 aaKnown RBP17.6■□□□□ 0.41
VPS16-208ENST00000487461 SRPK2P78362 688 aaKnown RBP17.6■□□□□ 0.41
VPS16-208ENST00000487461 CHRNA2Q15822 529 aa17.6■□□□□ 0.41
VPS16-208ENST00000487461 KIAA0232Q92628 1395 aa17.6■□□□□ 0.41
VPS16-208ENST00000487461 COL14A1Q05707 1796 aaKnown RBP17.59■□□□□ 0.41
VPS16-208ENST00000487461 NRAPQ86VF7 1730 aa17.58■□□□□ 0.41
VPS16-208ENST00000487461 SF3B2Q13435 895 aaKnown RBP17.58■□□□□ 0.4
VPS16-208ENST00000487461 NEUROD1Q13562 356 aa17.58■□□□□ 0.4
VPS16-208ENST00000487461 ABTB2Q8N961 1025 aa17.58■□□□□ 0.4
VPS16-208ENST00000487461 ITSN1Q15811 1721 aa17.58■□□□□ 0.4
VPS16-208ENST00000487461 CRYBG1Q9Y4K1 1723 aa17.57■□□□□ 0.4
VPS16-208ENST00000487461 STRN4Q9NRL3 753 aa17.56■□□□□ 0.4
VPS16-208ENST00000487461 SPATA31A1Q5TZJ5 1347 aa17.55■□□□□ 0.4
VPS16-208ENST00000487461 FAM182BQ5T319 152 aa17.55■□□□□ 0.4
VPS16-208ENST00000487461 CABP1Q9NZU7 370 aa17.55■□□□□ 0.4
VPS16-208ENST00000487461 PPIP5K1Q6PFW1 1433 aa17.55■□□□□ 0.4
VPS16-208ENST00000487461 TOPAZ1Q8N9V7 1692 aa17.55■□□□□ 0.4
VPS16-208ENST00000487461 EVA1CP58658 441 aa17.53■□□□□ 0.4
VPS16-208ENST00000487461 NLRP13Q86W25 1043 aa17.53■□□□□ 0.4
VPS16-208ENST00000487461 USP19O94966 1318 aa17.52■□□□□ 0.4
VPS16-208ENST00000487461 GCP02774 474 aa17.52■□□□□ 0.4
VPS16-208ENST00000487461 USP35Q9P2H5 1018 aa17.5■□□□□ 0.39
VPS16-208ENST00000487461 PHRF1Q9P1Y6 1649 aaKnown RBP17.5■□□□□ 0.39
VPS16-208ENST00000487461 EVC2Q86UK5 1308 aa17.49■□□□□ 0.39
VPS16-208ENST00000487461 BAG6P46379 1132 aa17.49■□□□□ 0.39
VPS16-208ENST00000487461 LARP1Q6PKG0 1096 aaKnown RBP17.49■□□□□ 0.39
VPS16-208ENST00000487461 BRD4O60885 1362 aaPredicted RBP17.49■□□□□ 0.39
VPS16-208ENST00000487461 CPDO75976 1380 aa17.49■□□□□ 0.39
VPS16-208ENST00000487461 NLRP6P59044 892 aa17.48■□□□□ 0.39
VPS16-208ENST00000487461 EN1Q05925 392 aaPredicted RBP17.48■□□□□ 0.39
VPS16-208ENST00000487461 BARGINQ6ZT62 677 aa17.48■□□□□ 0.39
VPS16-208ENST00000487461 ROCK2O75116 1388 aaKnown RBP17.48■□□□□ 0.39
VPS16-208ENST00000487461 CAMTA1Q9Y6Y1 1673 aa17.48■□□□□ 0.39
VPS16-208ENST00000487461 SSH2Q76I76 1423 aa17.47■□□□□ 0.39
VPS16-208ENST00000487461 QRICH2Q9H0J4 1663 aa17.47■□□□□ 0.39
VPS16-208ENST00000487461 THSD7AQ9UPZ6 1657 aa17.47■□□□□ 0.39
VPS16-208ENST00000487461 USP6P35125 1406 aa17.47■□□□□ 0.39
VPS16-208ENST00000487461 NRKQ7Z2Y5 1582 aa17.46■□□□□ 0.39
VPS16-208ENST00000487461 FAM196AQ6ZSG2 479 aa17.45■□□□□ 0.38
VPS16-208ENST00000487461 TCP11L2Q8N4U5 519 aa17.45■□□□□ 0.38
VPS16-208ENST00000487461 TRPM1Q7Z4N2 1603 aa17.45■□□□□ 0.38
VPS16-208ENST00000487461 ZBTB7CA1YPR0 619 aa17.44■□□□□ 0.38
VPS16-208ENST00000487461 ZNF692Q9BU19 519 aaPredicted RBP17.44■□□□□ 0.38
VPS16-208ENST00000487461 TRIM37O94972 964 aa17.43■□□□□ 0.38
VPS16-208ENST00000487461 PDE3BQ13370 1112 aa17.43■□□□□ 0.38
VPS16-208ENST00000487461 PSDA5PKW4 1024 aaPredicted RBP17.42■□□□□ 0.38
VPS16-208ENST00000487461 THRAP3Q9Y2W1 955 aaKnown RBP17.42■□□□□ 0.38
VPS16-208ENST00000487461 TTC21BQ7Z4L5 1316 aa17.42■□□□□ 0.38
VPS16-208ENST00000487461 LMO7Q8WWI1 1683 aa17.42■□□□□ 0.38
VPS16-208ENST00000487461 EZH2Q15910 746 aaKnown RBP17.41■□□□□ 0.38
VPS16-208ENST00000487461 CAMKK2Q96RR4 588 aa17.4■□□□□ 0.38
VPS16-208ENST00000487461 AXIN2Q9Y2T1 843 aa17.4■□□□□ 0.38
VPS16-208ENST00000487461 AATKQ6ZMQ8 1374 aa17.4■□□□□ 0.38
VPS16-208ENST00000487461 COL5A2P05997 1499 aaPredicted RBP17.39■□□□□ 0.37
VPS16-208ENST00000487461 APBA3O96018 575 aa17.39■□□□□ 0.37
VPS16-208ENST00000487461 CARD11Q9BXL7 1154 aa17.39■□□□□ 0.37
VPS16-208ENST00000487461 DISP2A7MBM2 1401 aa17.38■□□□□ 0.37
VPS16-208ENST00000487461 CPSF1Q10570 1443 aaKnown RBP17.38■□□□□ 0.37
VPS16-208ENST00000487461 SLIT3O75094 1523 aa17.37■□□□□ 0.37
VPS16-208ENST00000487461 ARHGEF25Q86VW2 580 aa17.37■□□□□ 0.37
VPS16-208ENST00000487461 RGPD1P0DJD0 1748 aa17.37■□□□□ 0.37
VPS16-208ENST00000487461 CRB1P82279 1406 aa17.37■□□□□ 0.37
VPS16-208ENST00000487461 SOX12O15370 315 aa17.36■□□□□ 0.37
VPS16-208ENST00000487461 R3HDM1Q15032 1099 aaKnown RBP17.36■□□□□ 0.37
VPS16-208ENST00000487461 TTC21AQ8NDW8 1320 aa17.36■□□□□ 0.37
VPS16-208ENST00000487461 TOM1L2Q6ZVM7 507 aa17.35■□□□□ 0.37
VPS16-208ENST00000487461 KCNH5Q8NCM2 988 aa17.35■□□□□ 0.37
VPS16-208ENST00000487461 KTN1Q86UP2 1357 aaKnown RBP17.35■□□□□ 0.37
VPS16-208ENST00000487461 PIK3C2AO00443 1686 aa17.35■□□□□ 0.37
VPS16-208ENST00000487461 TNS1Q9HBL0 1735 aaKnown RBP17.33■□□□□ 0.37
VPS16-208ENST00000487461 SBNO2Q9Y2G9 1366 aa17.33■□□□□ 0.36
VPS16-208ENST00000487461 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.33■□□□□ 0.36
VPS16-208ENST00000487461 COL18A1P39060 1754 aa17.33■□□□□ 0.36
VPS16-208ENST00000487461 TONSLQ96HA7 1378 aa17.32■□□□□ 0.36
VPS16-208ENST00000487461 WDR17Q8IZU2 1322 aa17.32■□□□□ 0.36
VPS16-208ENST00000487461 TMC1Q8TDI8 760 aa17.32■□□□□ 0.36
VPS16-208ENST00000487461 SLC12A5Q9H2X9 1139 aa17.32■□□□□ 0.36
VPS16-208ENST00000487461 AKAP12Q02952 1782 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms