RNA–Protein interactions for RNA: ENST00000487275.1

ZNF541-204, Transcript of zinc finger protein 541, humanhuman

TSL 3

Gene ZNF541, Length 579 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541-204ENST00000487275 NME9Q86XW9 330 aa10.77□□□□□ -0.69
ZNF541-204ENST00000487275 COG3Q96JB2 828 aa10.77□□□□□ -0.69
ZNF541-204ENST00000487275 TTC21AQ8NDW8 1320 aa10.77□□□□□ -0.69
ZNF541-204ENST00000487275 HNRNPUQ00839 825 aaKnown RBP eCLIP10.76□□□□□ -0.69
ZNF541-204ENST00000487275 WDR43Q15061 677 aaKnown RBP eCLIP10.76□□□□□ -0.69
ZNF541-204ENST00000487275 CADPS2Q86UW7 1296 aa10.76□□□□□ -0.69
ZNF541-204ENST00000487275 CFAP53Q96M91 514 aa10.76□□□□□ -0.69
ZNF541-204ENST00000487275 ANKRD26Q9UPS8 1709 aa10.75□□□□□ -0.69
ZNF541-204ENST00000487275 RGPD8O14715 1765 aaPredicted RBP10.75□□□□□ -0.69
ZNF541-204ENST00000487275 LRRC7Q96NW7 1537 aa10.75□□□□□ -0.69
ZNF541-204ENST00000487275 MTHFSP49914 203 aa10.75□□□□□ -0.69
ZNF541-204ENST00000487275 SCAF1Q9H7N4 1312 aaKnown RBP10.75□□□□□ -0.69
ZNF541-204ENST00000487275 SSH2Q76I76 1423 aa10.75□□□□□ -0.69
ZNF541-204ENST00000487275 C1orf167Q5SNV9 1468 aa10.74□□□□□ -0.69
ZNF541-204ENST00000487275 NRKQ7Z2Y5 1582 aa10.74□□□□□ -0.69
ZNF541-204ENST00000487275 PSME1Q06323 249 aa10.74□□□□□ -0.69
ZNF541-204ENST00000487275 ZRANB1Q9UGI0 708 aa10.74□□□□□ -0.69
ZNF541-204ENST00000487275 PAK3O75914 559 aaPredicted RBP10.73□□□□□ -0.69
ZNF541-204ENST00000487275 ORAI2Q96SN7 254 aa10.73□□□□□ -0.69
ZNF541-204ENST00000487275 MST1RQ04912 1400 aa10.73□□□□□ -0.69
ZNF541-204ENST00000487275 INSRP06213 1382 aa10.72□□□□□ -0.69
ZNF541-204ENST00000487275 OVOS2A0A0J9YW53 1432 aa10.71□□□□□ -0.69
ZNF541-204ENST00000487275 FOXO3O43524 673 aa10.71□□□□□ -0.69
ZNF541-204ENST00000487275 KIF1AQ12756 1690 aa10.71□□□□□ -0.69
ZNF541-204ENST00000487275 OVOS2Q6IE36 1432 aa10.71□□□□□ -0.69
ZNF541-204ENST00000487275 AATKQ6ZMQ8 1374 aa10.71□□□□□ -0.69
ZNF541-204ENST00000487275 USP31Q70CQ4 1352 aa10.71□□□□□ -0.69
ZNF541-204ENST00000487275 PPM1GO15355 546 aaPredicted RBP10.7□□□□□ -0.7
ZNF541-204ENST00000487275 NLRP6P59044 892 aa10.7□□□□□ -0.7
ZNF541-204ENST00000487275 AEBP2Q6ZN18 517 aaPredicted RBP10.7□□□□□ -0.7
ZNF541-204ENST00000487275 ABTB2Q8N961 1025 aa10.7□□□□□ -0.7
ZNF541-204ENST00000487275 POLKQ9UBT6 870 aa10.7□□□□□ -0.7
ZNF541-204ENST00000487275 ADAMTS8Q9UP79 889 aa10.7□□□□□ -0.7
ZNF541-204ENST00000487275 NUDCQ9Y266 331 aa10.7□□□□□ -0.7
ZNF541-204ENST00000487275 BLMP54132 1417 aaPredicted RBP10.69□□□□□ -0.7
ZNF541-204ENST00000487275 ZBED9Q6R2W3 1325 aa10.69□□□□□ -0.7
ZNF541-204ENST00000487275 KRT28Q7Z3Y7 464 aa10.69□□□□□ -0.7
ZNF541-204ENST00000487275 XIRP1Q702N8 1843 aaKnown RBP10.68□□□□□ -0.7
ZNF541-204ENST00000487275 FBLN1P23142 703 aa10.68□□□□□ -0.7
ZNF541-204ENST00000487275 XPCQ01831 940 aaPredicted RBP10.68□□□□□ -0.7
ZNF541-204ENST00000487275 RRS1Q15050 365 aaKnown RBP10.68□□□□□ -0.7
ZNF541-204ENST00000487275 NUTM2GQ5VZR2 741 aa10.68□□□□□ -0.7
ZNF541-204ENST00000487275 EMILIN1Q9Y6C2 1016 aa10.68□□□□□ -0.7
ZNF541-204ENST00000487275 SMG6Q86US8 1419 aaKnown RBP10.67□□□□□ -0.7
ZNF541-204ENST00000487275 PIK3C2AO00443 1686 aa10.67□□□□□ -0.7
ZNF541-204ENST00000487275 NPHP3Q7Z494 1330 aa10.67□□□□□ -0.7
ZNF541-204ENST00000487275 SOX12O15370 315 aa10.67□□□□□ -0.7
ZNF541-204ENST00000487275 DIAPH1O60610 1272 aaKnown RBP10.67□□□□□ -0.7
ZNF541-204ENST00000487275 LMOD2Q6P5Q4 547 aa10.67□□□□□ -0.7
ZNF541-204ENST00000487275 SLAIN2Q9P270 581 aa10.67□□□□□ -0.7
ZNF541-204ENST00000487275 CDK12Q9NYV4 1490 aaPredicted RBP10.67□□□□□ -0.7
ZNF541-204ENST00000487275 PNPLA6Q8IY17 1366 aa10.66□□□□□ -0.7
ZNF541-204ENST00000487275 U2SURPO15042 1029 aaKnown RBP10.66□□□□□ -0.7
ZNF541-204ENST00000487275 U2AF1L5P0DN76 240 aaPredicted RBP10.66□□□□□ -0.7
ZNF541-204ENST00000487275 U2AF1Q01081 240 aaKnown RBP eCLIP10.66□□□□□ -0.7
ZNF541-204ENST00000487275 COL3A1P02461 1466 aaPredicted RBP10.66□□□□□ -0.7
ZNF541-204ENST00000487275 SENP3-EIF4A1A0A087X0R7 540 aa10.65□□□□□ -0.7
ZNF541-204ENST00000487275 BRINP3Q76B58 766 aa10.65□□□□□ -0.7
ZNF541-204ENST00000487275 CCDC146Q8IYE0 955 aa10.65□□□□□ -0.7
ZNF541-204ENST00000487275 SHPRHQ149N8 1683 aa10.65□□□□□ -0.7
ZNF541-204ENST00000487275 SBNO1A3KN83 1393 aa10.65□□□□□ -0.71
ZNF541-204ENST00000487275 MAP2P11137 1827 aaKnown RBP10.64□□□□□ -0.71
ZNF541-204ENST00000487275 AMPHP49418 695 aa10.64□□□□□ -0.71
ZNF541-204ENST00000487275 KCNH5Q8NCM2 988 aa10.64□□□□□ -0.71
ZNF541-204ENST00000487275 DDX17Q92841 729 aaKnown RBP10.64□□□□□ -0.71
ZNF541-204ENST00000487275 SALL2Q9Y467 1007 aaPredicted RBP10.64□□□□□ -0.71
ZNF541-204ENST00000487275 USP54Q70EL1 1684 aa10.63□□□□□ -0.71
ZNF541-204ENST00000487275 MAP3K19Q56UN5 1328 aa10.63□□□□□ -0.71
ZNF541-204ENST00000487275 LTBP4Q8N2S1 1624 aa10.63□□□□□ -0.71
ZNF541-204ENST00000487275 RUNDC1Q96C34 613 aa10.63□□□□□ -0.71
ZNF541-204ENST00000487275 PNNQ9H307 717 aaKnown RBP10.63□□□□□ -0.71
ZNF541-204ENST00000487275 TRPM3Q9HCF6 1732 aaPredicted RBP10.62□□□□□ -0.71
ZNF541-204ENST00000487275 APAF1O14727 1248 aa10.62□□□□□ -0.71
ZNF541-204ENST00000487275 IL13P35225 146 aa10.62□□□□□ -0.71
ZNF541-204ENST00000487275 FLT4P35916 1363 aa10.62□□□□□ -0.71
ZNF541-204ENST00000487275 KIF24Q5T7B8 1368 aa10.62□□□□□ -0.71
ZNF541-204ENST00000487275 TNS3Q68CZ2 1445 aa10.61□□□□□ -0.71
ZNF541-204ENST00000487275 PLEKHG5O94827 1062 aa10.61□□□□□ -0.71
ZNF541-204ENST00000487275 NEFMP07197 916 aa10.61□□□□□ -0.71
ZNF541-204ENST00000487275 PXDNQ92626 1479 aa10.61□□□□□ -0.71
ZNF541-204ENST00000487275 USP19O94966 1318 aa10.6□□□□□ -0.71
ZNF541-204ENST00000487275 SPATA31A3Q5VYP0 1347 aa10.6□□□□□ -0.71
ZNF541-204ENST00000487275 MAPK8IP3Q9UPT6 1336 aa10.6□□□□□ -0.71
ZNF541-204ENST00000487275 ZBTB7CA1YPR0 619 aa10.6□□□□□ -0.71
ZNF541-204ENST00000487275 GCP02774 474 aa10.6□□□□□ -0.71
ZNF541-204ENST00000487275 PDE3BQ13370 1112 aa10.6□□□□□ -0.71
ZNF541-204ENST00000487275 EIF4A2Q14240 407 aaKnown RBP10.6□□□□□ -0.71
ZNF541-204ENST00000487275 HSP90AB2PQ58FF8 381 aa10.6□□□□□ -0.71
ZNF541-204ENST00000487275 NGEFQ8N5V2 710 aa10.6□□□□□ -0.71
ZNF541-204ENST00000487275 MARF1Q9Y4F3 1742 aaKnown RBP10.6□□□□□ -0.71
ZNF541-204ENST00000487275 RTL1A6NKG5 1358 aa10.6□□□□□ -0.71
ZNF541-204ENST00000487275 ARHGEF10O15013 1369 aa10.6□□□□□ -0.71
ZNF541-204ENST00000487275 SLIT3O75094 1523 aa10.59□□□□□ -0.71
ZNF541-204ENST00000487275 FCHSD2O94868 740 aa10.59□□□□□ -0.71
ZNF541-204ENST00000487275 HOXC9P31274 260 aa10.59□□□□□ -0.71
ZNF541-204ENST00000487275 SOS2Q07890 1332 aaPredicted RBP10.58□□□□□ -0.71
ZNF541-204ENST00000487275 NFAT5O94916 1531 aa10.58□□□□□ -0.72
ZNF541-204ENST00000487275 PEAK1Q9H792 1746 aa10.58□□□□□ -0.72
ZNF541-204ENST00000487275 ALS2Q96Q42 1657 aa10.58□□□□□ -0.72
ZNF541-204ENST00000487275 HMOX1P09601 288 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms