RNA–Protein interactions for RNA: ENST00000486711.1

SMC4-218, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 621 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-218ENST00000486711 ATP13A2Q9NQ11 1180 aa10.39□□□□□ -0.75
SMC4-218ENST00000486711 WASF2Q9Y6W5 498 aa10.39□□□□□ -0.75
SMC4-218ENST00000486711 NUTM2BA6NNL0 878 aaPredicted RBP10.38□□□□□ -0.75
SMC4-218ENST00000486711 NUTM2EB1AL46 878 aaPredicted RBP10.38□□□□□ -0.75
SMC4-218ENST00000486711 NUTM2DQ5VT03 806 aaPredicted RBP10.38□□□□□ -0.75
SMC4-218ENST00000486711 NUTM2AQ8IVF1 878 aaPredicted RBP10.38□□□□□ -0.75
SMC4-218ENST00000486711 RSPH6AQ9H0K4 717 aa10.38□□□□□ -0.75
SMC4-218ENST00000486711 F12P00748 615 aaPredicted RBP10.37□□□□□ -0.75
SMC4-218ENST00000486711 VARSP26640 1264 aaKnown RBP10.37□□□□□ -0.75
SMC4-218ENST00000486711 CLK2P49760 499 aaKnown RBP10.37□□□□□ -0.75
SMC4-218ENST00000486711 LILRB3O75022 631 aa10.36□□□□□ -0.75
SMC4-218ENST00000486711 QPCTQ16769 361 aa10.36□□□□□ -0.75
SMC4-218ENST00000486711 TSC1Q92574 1164 aa10.36□□□□□ -0.75
SMC4-218ENST00000486711 SENP2Q9HC62 589 aa10.36□□□□□ -0.75
SMC4-218ENST00000486711 MAP10Q9P2G4 905 aa10.36□□□□□ -0.75
SMC4-218ENST00000486711 PLEKHG3A1L390 1219 aa10.35□□□□□ -0.75
SMC4-218ENST00000486711 MPNDQ8N594 471 aa10.34□□□□□ -0.75
SMC4-218ENST00000486711 HELBQ8NG08 1087 aaPredicted RBP10.34□□□□□ -0.75
SMC4-218ENST00000486711 TLL2Q9Y6L7 1015 aa10.34□□□□□ -0.75
SMC4-218ENST00000486711 KIFC2Q96AC6 838 aa10.33□□□□□ -0.76
SMC4-218ENST00000486711 PER1O15534 1290 aaPredicted RBP10.32□□□□□ -0.76
SMC4-218ENST00000486711 FAM174AQ8TBP5 190 aa10.32□□□□□ -0.76
SMC4-218ENST00000486711 TRIM47Q96LD4 638 aa10.32□□□□□ -0.76
SMC4-218ENST00000486711 CAPN5O15484 640 aaPredicted RBP10.3□□□□□ -0.76
SMC4-218ENST00000486711 RTL5Q5HYW3 569 aaPredicted RBP10.3□□□□□ -0.76
SMC4-218ENST00000486711 TREML4Q6UXN2 200 aa10.3□□□□□ -0.76
SMC4-218ENST00000486711 ARMC2Q8NEN0 867 aa10.3□□□□□ -0.76
SMC4-218ENST00000486711 POLR3EQ9NVU0 708 aa10.3□□□□□ -0.76
SMC4-218ENST00000486711 FOXJ1Q92949 421 aa10.29□□□□□ -0.76
SMC4-218ENST00000486711 SNRPBP14678 240 aaKnown RBP10.28□□□□□ -0.76
SMC4-218ENST00000486711 NNTQ13423 1086 aa10.28□□□□□ -0.76
SMC4-218ENST00000486711 AGERQ15109 404 aa10.28□□□□□ -0.76
SMC4-218ENST00000486711 BPHLQ86WA6 291 aaPredicted RBP10.27□□□□□ -0.77
SMC4-218ENST00000486711 DDRGK1Q96HY6 314 aa10.27□□□□□ -0.77
SMC4-218ENST00000486711 KDM4CQ9H3R0 1056 aa10.27□□□□□ -0.77
SMC4-218ENST00000486711 ADH1CP00326 375 aa10.26□□□□□ -0.77
SMC4-218ENST00000486711 NBPF14Q5TI25 921 aa10.26□□□□□ -0.77
SMC4-218ENST00000486711 GPBP1L1Q9HC44 474 aaPredicted RBP10.26□□□□□ -0.77
SMC4-218ENST00000486711 BMP1P13497 986 aa10.25□□□□□ -0.77
SMC4-218ENST00000486711 SKIV2LQ15477 1246 aaKnown RBP10.25□□□□□ -0.77
SMC4-218ENST00000486711 SH3D19Q5HYK7 790 aa10.25□□□□□ -0.77
SMC4-218ENST00000486711 CDK15Q96Q40 435 aa10.25□□□□□ -0.77
SMC4-218ENST00000486711 WFS1O76024 890 aa10.24□□□□□ -0.77
SMC4-218ENST00000486711 LCE2AQ5TA79 106 aaPredicted RBP10.24□□□□□ -0.77
SMC4-218ENST00000486711 TRIM46Q7Z4K8 759 aa10.24□□□□□ -0.77
SMC4-218ENST00000486711 ARID5BQ14865 1188 aa10.23□□□□□ -0.77
SMC4-218ENST00000486711 C4orf48Q5BLP8 95 aa10.23□□□□□ -0.77
SMC4-218ENST00000486711 GPKOWQ92917 476 aaPredicted RBP eCLIP10.22□□□□□ -0.77
SMC4-218ENST00000486711 FAM117AQ9C073 453 aa10.22□□□□□ -0.77
SMC4-218ENST00000486711 TIMP2P16035 220 aa10.21□□□□□ -0.77
SMC4-218ENST00000486711 WDR4P57081 412 aaKnown RBP10.21□□□□□ -0.77
SMC4-218ENST00000486711 NFX1Q12986 1120 aaKnown RBP10.21□□□□□ -0.77
SMC4-218ENST00000486711 NR5A1Q13285 461 aa10.21□□□□□ -0.77
SMC4-218ENST00000486711 CTDSPL2Q05D32 466 aa10.2□□□□□ -0.78
SMC4-218ENST00000486711 SH3RF1Q7Z6J0 888 aa10.2□□□□□ -0.78
SMC4-218ENST00000486711 C1QTNF2Q9BXJ5 285 aa10.2□□□□□ -0.78
SMC4-218ENST00000486711 ATP1B4Q9UN42 357 aaPredicted RBP10.2□□□□□ -0.78
SMC4-218ENST00000486711 TERTO14746 1132 aaKnown RBP10.19□□□□□ -0.78
SMC4-218ENST00000486711 SH3BP5LQ7L8J4 393 aa10.19□□□□□ -0.78
SMC4-218ENST00000486711 PPP2R2DQ66LE6 453 aa10.18□□□□□ -0.78
SMC4-218ENST00000486711 MRPL14Q6P1L8 145 aaKnown RBP10.18□□□□□ -0.78
SMC4-218ENST00000486711 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.18□□□□□ -0.78
SMC4-218ENST00000486711 MAGEB6P1A0A0J9YX57 407 aa10.17□□□□□ -0.78
SMC4-218ENST00000486711 SCARF1Q14162 830 aa10.17□□□□□ -0.78
SMC4-218ENST00000486711 TRMT44Q8IYL2 757 aaKnown RBP10.17□□□□□ -0.78
SMC4-218ENST00000486711 PROCA1Q8NCQ7 364 aaPredicted RBP10.17□□□□□ -0.78
SMC4-218ENST00000486711 ZFP42Q96MM3 310 aa10.17□□□□□ -0.78
SMC4-218ENST00000486711 KLF16Q9BXK1 252 aaPredicted RBP10.17□□□□□ -0.78
SMC4-218ENST00000486711 MAP4K5Q9Y4K4 846 aa10.17□□□□□ -0.78
SMC4-218ENST00000486711 ZIC2O95409 532 aaPredicted RBP10.16□□□□□ -0.78
SMC4-218ENST00000486711 GRM5P41594 1212 aa10.16□□□□□ -0.78
SMC4-218ENST00000486711 NR3C2P08235 984 aa10.15□□□□□ -0.78
SMC4-218ENST00000486711 LRRN4Q8WUT4 740 aa10.15□□□□□ -0.78
SMC4-218ENST00000486711 FSHRP23945 695 aa10.14□□□□□ -0.79
SMC4-218ENST00000486711 VASH1Q7L8A9 365 aaPredicted RBP10.14□□□□□ -0.79
SMC4-218ENST00000486711 CARD14Q9BXL6 1004 aa10.14□□□□□ -0.79
SMC4-218ENST00000486711 FKBPLQ9UIM3 349 aa10.14□□□□□ -0.79
SMC4-218ENST00000486711 ZC3H4Q9UPT8 1303 aaKnown RBP10.13□□□□□ -0.79
SMC4-218ENST00000486711 FBXO31Q5XUX0 539 aaPredicted RBP10.13□□□□□ -0.79
SMC4-218ENST00000486711 PDXDC2PQ6P474 469 aa10.13□□□□□ -0.79
SMC4-218ENST00000486711 SLC16A10Q8TF71 515 aa10.13□□□□□ -0.79
SMC4-218ENST00000486711 ITPKCQ96DU7 683 aa10.13□□□□□ -0.79
SMC4-218ENST00000486711 PURBQ96QR8 312 aaKnown RBP10.13□□□□□ -0.79
SMC4-218ENST00000486711 ZFAND3Q9H8U3 227 aa10.13□□□□□ -0.79
SMC4-218ENST00000486711 NXF1Q9UBU9 619 aaKnown RBP10.13□□□□□ -0.79
SMC4-218ENST00000486711 WIPF1O43516 503 aa10.12□□□□□ -0.79
SMC4-218ENST00000486711 AP1G2O75843 785 aa10.12□□□□□ -0.79
SMC4-218ENST00000486711 ERFEQ4G0M1 354 aa10.12□□□□□ -0.79
SMC4-218ENST00000486711 TPRNQ4KMQ1 711 aa10.12□□□□□ -0.79
SMC4-218ENST00000486711 ARHGAP9Q9BRR9 750 aa10.12□□□□□ -0.79
SMC4-218ENST00000486711 PRKCSHP14314 528 aaPredicted RBP10.11□□□□□ -0.79
SMC4-218ENST00000486711 NR6A1Q15406 480 aa10.11□□□□□ -0.79
SMC4-218ENST00000486711 NPAS3Q8IXF0 933 aa10.11□□□□□ -0.79
SMC4-218ENST00000486711 UPP2O95045 317 aa10.09□□□□□ -0.79
SMC4-218ENST00000486711 CCDC116Q8IYX3 515 aa10.09□□□□□ -0.79
SMC4-218ENST00000486711 PNMA1Q8ND90 353 aa10.09□□□□□ -0.79
SMC4-218ENST00000486711 CDV3Q9UKY7 258 aaKnown RBP10.09□□□□□ -0.79
SMC4-218ENST00000486711 EMILIN1Q9Y6C2 1016 aa10.09□□□□□ -0.79
SMC4-218ENST00000486711 INSM1Q01101 510 aaPredicted RBP10.08□□□□□ -0.8
SMC4-218ENST00000486711 ZBTB33Q86T24 672 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms