RNA–Protein interactions for RNA: ENST00000486641.2

CCDC171-208, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 2,322 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-208ENST00000486641 ATF7IPQ6VMQ6 1270 aa13.21□□□□□ -0.3
CCDC171-208ENST00000486641 TMEM57Q8N5G2 664 aa13.21□□□□□ -0.3
CCDC171-208ENST00000486641 SSH1Q8WYL5 1049 aa13.21□□□□□ -0.3
CCDC171-208ENST00000486641 LMBRD1Q9NUN5 540 aa13.21□□□□□ -0.3
CCDC171-208ENST00000486641 ZHX1Q9UKY1 873 aaPredicted RBP13.21□□□□□ -0.3
CCDC171-208ENST00000486641 NOB1Q9ULX3 412 aaKnown RBP13.21□□□□□ -0.3
CCDC171-208ENST00000486641 ARHGAP31Q2M1Z3 1444 aa13.2□□□□□ -0.3
CCDC171-208ENST00000486641 CARMIL2Q6F5E8 1435 aa13.2□□□□□ -0.3
CCDC171-208ENST00000486641 SPHKAPQ2M3C7 1700 aa13.2□□□□□ -0.3
CCDC171-208ENST00000486641 SYCP2Q9BX26 1530 aa13.2□□□□□ -0.3
CCDC171-208ENST00000486641 JPH4Q96JJ6 628 aa13.2□□□□□ -0.3
CCDC171-208ENST00000486641 MAST1Q9Y2H9 1570 aa13.19□□□□□ -0.3
CCDC171-208ENST00000486641 DUOX2Q9NRD8 1548 aa13.19□□□□□ -0.3
CCDC171-208ENST00000486641 SASS6Q6UVJ0 657 aa13.19□□□□□ -0.3
CCDC171-208ENST00000486641 TBC1D9Q6ZT07 1266 aa13.19□□□□□ -0.3
CCDC171-208ENST00000486641 CT47B1P0C2W7 299 aaPredicted RBP13.18□□□□□ -0.3
CCDC171-208ENST00000486641 MTHFSP49914 203 aa13.18□□□□□ -0.3
CCDC171-208ENST00000486641 PREX2Q70Z35 1606 aa13.18□□□□□ -0.3
CCDC171-208ENST00000486641 IFT140Q96RY7 1462 aa13.18□□□□□ -0.3
CCDC171-208ENST00000486641 MCM5P33992 734 aa13.18□□□□□ -0.3
CCDC171-208ENST00000486641 STAC3Q96MF2 364 aa13.17□□□□□ -0.3
CCDC171-208ENST00000486641 RBM27Q9P2N5 1060 aaKnown RBP13.17□□□□□ -0.3
CCDC171-208ENST00000486641 CFAP70Q5T0N1 1121 aa13.17□□□□□ -0.3
CCDC171-208ENST00000486641 CCDC94Q9BW85 323 aaPredicted RBP13.17□□□□□ -0.3
CCDC171-208ENST00000486641 KIF16BQ96L93 1317 aa13.17□□□□□ -0.3
CCDC171-208ENST00000486641 SLC24A1O60721 1099 aa13.16□□□□□ -0.3
CCDC171-208ENST00000486641 CYP2E1P05181 493 aaPredicted RBP13.16□□□□□ -0.3
CCDC171-208ENST00000486641 DMTNQ08495 405 aa13.16□□□□□ -0.3
CCDC171-208ENST00000486641 PKP1Q13835 747 aa13.16□□□□□ -0.3
CCDC171-208ENST00000486641 ANKRD45Q5TZF3 282 aa13.16□□□□□ -0.3
CCDC171-208ENST00000486641 GPT2Q8TD30 523 aa13.16□□□□□ -0.3
CCDC171-208ENST00000486641 NSD3Q9BZ95 1437 aa13.16□□□□□ -0.3
CCDC171-208ENST00000486641 PRPF40AO75400 957 aaKnown RBP13.16□□□□□ -0.3
CCDC171-208ENST00000486641 NUCB2P80303 420 aa13.16□□□□□ -0.3
CCDC171-208ENST00000486641 CHMP7Q8WUX9 453 aaPredicted RBP13.16□□□□□ -0.3
CCDC171-208ENST00000486641 CCDC39Q9UFE4 941 aa13.16□□□□□ -0.3
CCDC171-208ENST00000486641 ZSCAN20P17040 1043 aaPredicted RBP13.15□□□□□ -0.3
CCDC171-208ENST00000486641 NCBP3Q53F19 620 aaKnown RBP13.15□□□□□ -0.3
CCDC171-208ENST00000486641 UTP14CQ5TAP6 766 aaKnown RBP13.15□□□□□ -0.3
CCDC171-208ENST00000486641 ZNF518AQ6AHZ1 1483 aa13.15□□□□□ -0.3
CCDC171-208ENST00000486641 U2AF1L5P0DN76 240 aaPredicted RBP13.14□□□□□ -0.31
CCDC171-208ENST00000486641 U2AF1Q01081 240 aaKnown RBP eCLIP13.14□□□□□ -0.31
CCDC171-208ENST00000486641 CFAP74Q9C0B2 1584 aa13.14□□□□□ -0.31
CCDC171-208ENST00000486641 JARID2Q92833 1246 aaPredicted RBP13.14□□□□□ -0.31
CCDC171-208ENST00000486641 CFAP53Q96M91 514 aa13.14□□□□□ -0.31
CCDC171-208ENST00000486641 LRSAM1Q6UWE0 723 aa13.13□□□□□ -0.31
CCDC171-208ENST00000486641 SLC12A5Q9H2X9 1139 aa13.13□□□□□ -0.31
CCDC171-208ENST00000486641 FBLN2P98095 1184 aa13.13□□□□□ -0.31
CCDC171-208ENST00000486641 NOS1P29475 1434 aa13.13□□□□□ -0.31
CCDC171-208ENST00000486641 SYCE3A1L190 88 aa13.12□□□□□ -0.31
CCDC171-208ENST00000486641 TMEM63CQ9P1W3 806 aa13.12□□□□□ -0.31
CCDC171-208ENST00000486641 KIAA1210Q9ULL0 1709 aa13.12□□□□□ -0.31
CCDC171-208ENST00000486641 NSFL1CQ9UNZ2 370 aaKnown RBP13.12□□□□□ -0.31
CCDC171-208ENST00000486641 TRIM35Q9UPQ4 493 aa13.12□□□□□ -0.31
CCDC171-208ENST00000486641 ARHGAP5Q13017 1502 aa13.12□□□□□ -0.31
CCDC171-208ENST00000486641 CLTCL1P53675 1640 aa13.11□□□□□ -0.31
CCDC171-208ENST00000486641 TRPM2O94759 1503 aa13.11□□□□□ -0.31
CCDC171-208ENST00000486641 ZBTB7CA1YPR0 619 aa13.11□□□□□ -0.31
CCDC171-208ENST00000486641 RABEP1Q15276 862 aa13.11□□□□□ -0.31
CCDC171-208ENST00000486641 MYRIPQ8NFW9 859 aa13.11□□□□□ -0.31
CCDC171-208ENST00000486641 CHAMP1Q96JM3 812 aa13.11□□□□□ -0.31
CCDC171-208ENST00000486641 PTPRTO14522 1441 aa13.11□□□□□ -0.31
CCDC171-208ENST00000486641 IPO8O15397 1037 aaKnown RBP13.11□□□□□ -0.31
CCDC171-208ENST00000486641 TSC1Q92574 1164 aa13.11□□□□□ -0.31
CCDC171-208ENST00000486641 PPIP5K1Q6PFW1 1433 aa13.11□□□□□ -0.31
CCDC171-208ENST00000486641 CDC45O75419 566 aa13.1□□□□□ -0.31
CCDC171-208ENST00000486641 FGD1P98174 961 aa13.1□□□□□ -0.31
CCDC171-208ENST00000486641 RNF214Q8ND24 703 aa13.1□□□□□ -0.31
CCDC171-208ENST00000486641 GCC1Q96CN9 775 aa13.1□□□□□ -0.31
CCDC171-208ENST00000486641 ZDHHC9Q9Y397 364 aa13.1□□□□□ -0.31
CCDC171-208ENST00000486641 ADGRB2O60241 1585 aa13.1□□□□□ -0.31
CCDC171-208ENST00000486641 TMPOP42166 694 aaKnown RBP13.1□□□□□ -0.31
CCDC171-208ENST00000486641 ZNF710Q8N1W2 664 aa13.1□□□□□ -0.31
CCDC171-208ENST00000486641 ZGPATQ8N5A5 531 aaKnown RBP13.1□□□□□ -0.31
CCDC171-208ENST00000486641 ADGRF5Q8IZF2 1346 aa13.09□□□□□ -0.31
CCDC171-208ENST00000486641 CD109Q6YHK3 1445 aa13.09□□□□□ -0.31
CCDC171-208ENST00000486641 C1orf115Q9H7X2 142 aa13.09□□□□□ -0.31
CCDC171-208ENST00000486641 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.09□□□□□ -0.31
CCDC171-208ENST00000486641 ZBTB7BO15156 539 aaPredicted RBP13.08□□□□□ -0.31
CCDC171-208ENST00000486641 CBX1P83916 185 aa13.08□□□□□ -0.31
CCDC171-208ENST00000486641 KIAA2012Q0VF49 1180 aa13.08□□□□□ -0.31
CCDC171-208ENST00000486641 PLEKHF1Q96S99 279 aa13.08□□□□□ -0.31
CCDC171-208ENST00000486641 CWC22Q9HCG8 908 aaKnown RBP13.08□□□□□ -0.31
CCDC171-208ENST00000486641 DNTTIP2Q5QJE6 756 aaKnown RBP13.08□□□□□ -0.32
CCDC171-208ENST00000486641 ADGRL1O94910 1474 aa13.07□□□□□ -0.32
CCDC171-208ENST00000486641 ABCC11Q96J66 1382 aa13.07□□□□□ -0.32
CCDC171-208ENST00000486641 PTMAP06454 111 aaKnown RBP13.07□□□□□ -0.32
CCDC171-208ENST00000486641 GSPT1P15170 499 aaKnown RBP13.07□□□□□ -0.32
CCDC171-208ENST00000486641 SIRT2Q8IXJ6 389 aa13.07□□□□□ -0.32
CCDC171-208ENST00000486641 USP26Q9BXU7 913 aa13.07□□□□□ -0.32
CCDC171-208ENST00000486641 ABCA6Q8N139 1617 aa13.07□□□□□ -0.32
CCDC171-208ENST00000486641 ATP2B3Q16720 1220 aa13.06□□□□□ -0.32
CCDC171-208ENST00000486641 U2SURPO15042 1029 aaKnown RBP13.05□□□□□ -0.32
CCDC171-208ENST00000486641 ALDH1L2Q3SY69 923 aa13.05□□□□□ -0.32
CCDC171-208ENST00000486641 MPNDQ8N594 471 aa13.05□□□□□ -0.32
CCDC171-208ENST00000486641 GTPBP4Q9BZE4 634 aaKnown RBP13.05□□□□□ -0.32
CCDC171-208ENST00000486641 MAP3K4Q9Y6R4 1608 aa13.05□□□□□ -0.32
CCDC171-208ENST00000486641 SBNO2Q9Y2G9 1366 aa13.05□□□□□ -0.32
CCDC171-208ENST00000486641 FAM177BA6PVY3 158 aa13.05□□□□□ -0.32
CCDC171-208ENST00000486641 PRIMPOLQ96LW4 560 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms