RNA–Protein interactions for RNA: ENST00000486572.1

COL1A1-207, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 3

Gene COL1A1, Length 836 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-207ENST00000486572 NGLY1Q96IV0 654 aa25.63■■□□□ 1.69
COL1A1-207ENST00000486572 HAP1P54257 671 aaPredicted RBP25.62■■□□□ 1.69
COL1A1-207ENST00000486572 CABLES1Q8TDN4 633 aa25.62■■□□□ 1.69
COL1A1-207ENST00000486572 USP6P35125 1406 aa25.62■■□□□ 1.69
COL1A1-207ENST00000486572 BRD4O60885 1362 aaPredicted RBP25.61■■□□□ 1.69
COL1A1-207ENST00000486572 PLEKHG5O94827 1062 aa25.6■■□□□ 1.69
COL1A1-207ENST00000486572 CRYBG1Q9Y4K1 1723 aa25.6■■□□□ 1.69
COL1A1-207ENST00000486572 PUS7Q96PZ0 661 aaKnown RBP25.59■■□□□ 1.69
COL1A1-207ENST00000486572 AKAP12Q02952 1782 aa25.58■■□□□ 1.69
COL1A1-207ENST00000486572 FNBP4Q8N3X1 1017 aaPredicted RBP25.56■■□□□ 1.68
COL1A1-207ENST00000486572 CPSF1Q10570 1443 aaKnown RBP25.55■■□□□ 1.68
COL1A1-207ENST00000486572 ZNF692Q9BU19 519 aaPredicted RBP25.55■■□□□ 1.68
COL1A1-207ENST00000486572 SSH2Q76I76 1423 aa25.54■■□□□ 1.68
COL1A1-207ENST00000486572 TMF1P82094 1093 aa25.54■■□□□ 1.68
COL1A1-207ENST00000486572 ABTB2Q8N961 1025 aa25.54■■□□□ 1.68
COL1A1-207ENST00000486572 USP21Q9UK80 565 aa25.54■■□□□ 1.68
COL1A1-207ENST00000486572 PHRF1Q9P1Y6 1649 aaKnown RBP25.54■■□□□ 1.68
COL1A1-207ENST00000486572 NRKQ7Z2Y5 1582 aa25.53■■□□□ 1.68
COL1A1-207ENST00000486572 MON2Q7Z3U7 1717 aa25.52■■□□□ 1.68
COL1A1-207ENST00000486572 NUTM2GQ5VZR2 741 aa25.52■■□□□ 1.68
COL1A1-207ENST00000486572 TMC1Q8TDI8 760 aa25.52■■□□□ 1.68
COL1A1-207ENST00000486572 KTN1Q86UP2 1357 aaKnown RBP25.52■■□□□ 1.68
COL1A1-207ENST00000486572 NINLQ9Y2I6 1382 aa25.52■■□□□ 1.68
COL1A1-207ENST00000486572 CD163L1Q9NR16 1453 aa25.52■■□□□ 1.68
COL1A1-207ENST00000486572 SLIT2O94813 1529 aa25.52■■□□□ 1.68
COL1A1-207ENST00000486572 PLCH1Q4KWH8 1693 aa25.5■■□□□ 1.67
COL1A1-207ENST00000486572 BCL9LQ86UU0 1499 aa25.5■■□□□ 1.67
COL1A1-207ENST00000486572 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.49■■□□□ 1.67
COL1A1-207ENST00000486572 PIK3C2AO00443 1686 aa25.49■■□□□ 1.67
COL1A1-207ENST00000486572 SLC12A5Q9H2X9 1139 aa25.49■■□□□ 1.67
COL1A1-207ENST00000486572 QTRT2Q9H974 415 aaKnown RBP25.49■■□□□ 1.67
COL1A1-207ENST00000486572 USP19O94966 1318 aa25.48■■□□□ 1.67
COL1A1-207ENST00000486572 NLRP13Q86W25 1043 aa25.48■■□□□ 1.67
COL1A1-207ENST00000486572 TTC21BQ7Z4L5 1316 aa25.47■■□□□ 1.67
COL1A1-207ENST00000486572 NWD2Q9ULI1 1742 aa25.47■■□□□ 1.67
COL1A1-207ENST00000486572 RXRBP28702 533 aa25.47■■□□□ 1.67
COL1A1-207ENST00000486572 EIF4G2P78344 907 aaKnown RBP eCLIP25.47■■□□□ 1.67
COL1A1-207ENST00000486572 CDCA8Q53HL2 280 aa25.47■■□□□ 1.67
COL1A1-207ENST00000486572 HDGFL2Q7Z4V5 671 aaPredicted RBP25.47■■□□□ 1.67
COL1A1-207ENST00000486572 TRPC5Q9UL62 973 aaPredicted RBP25.47■■□□□ 1.67
COL1A1-207ENST00000486572 ATRNO75882 1429 aa25.46■■□□□ 1.67
COL1A1-207ENST00000486572 COL14A1Q05707 1796 aaKnown RBP25.46■■□□□ 1.67
COL1A1-207ENST00000486572 TTC21AQ8NDW8 1320 aa25.46■■□□□ 1.67
COL1A1-207ENST00000486572 TERF2IPQ9NYB0 399 aa25.46■■□□□ 1.67
COL1A1-207ENST00000486572 A0A1W2PP64 1363 aa25.45■■□□□ 1.67
COL1A1-207ENST00000486572 SOCS7O14512 581 aa25.45■■□□□ 1.66
COL1A1-207ENST00000486572 FAM83GA6ND36 823 aa25.44■■□□□ 1.66
COL1A1-207ENST00000486572 NLRP6P59044 892 aa25.44■■□□□ 1.66
COL1A1-207ENST00000486572 RBM6P78332 1123 aaKnown RBP25.44■■□□□ 1.66
COL1A1-207ENST00000486572 UNC5CLQ8IV45 518 aa25.44■■□□□ 1.66
COL1A1-207ENST00000486572 CDK12Q9NYV4 1490 aaPredicted RBP25.44■■□□□ 1.66
COL1A1-207ENST00000486572 PRDM11Q9NQV5 511 aa25.43■■□□□ 1.66
COL1A1-207ENST00000486572 EDC4Q6P2E9 1401 aaKnown RBP25.43■■□□□ 1.66
COL1A1-207ENST00000486572 KIAA0232Q92628 1395 aa25.43■■□□□ 1.66
COL1A1-207ENST00000486572 SLIT3O75094 1523 aa25.42■■□□□ 1.66
COL1A1-207ENST00000486572 HSPA5P11021 654 aaKnown RBP25.42■■□□□ 1.66
COL1A1-207ENST00000486572 NRAPQ86VF7 1730 aa25.4■■□□□ 1.66
COL1A1-207ENST00000486572 GCP02774 474 aa25.39■■□□□ 1.66
COL1A1-207ENST00000486572 ZC3H6P61129 1189 aaKnown RBP25.39■■□□□ 1.66
COL1A1-207ENST00000486572 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.39■■□□□ 1.66
COL1A1-207ENST00000486572 CPDO75976 1380 aa25.39■■□□□ 1.65
COL1A1-207ENST00000486572 ANKRD36BQ8N2N9 1353 aa25.39■■□□□ 1.65
COL1A1-207ENST00000486572 BTG4Q9NY30 223 aa25.38■■□□□ 1.65
COL1A1-207ENST00000486572 MYOM1P52179 1685 aa25.38■■□□□ 1.65
COL1A1-207ENST00000486572 USP54Q70EL1 1684 aa25.37■■□□□ 1.65
COL1A1-207ENST00000486572 RGS12O14924 1447 aa25.37■■□□□ 1.65
COL1A1-207ENST00000486572 USP31Q70CQ4 1352 aa25.35■■□□□ 1.65
COL1A1-207ENST00000486572 CHRNA2Q15822 529 aa25.35■■□□□ 1.65
COL1A1-207ENST00000486572 VPS72Q15906 364 aa25.35■■□□□ 1.65
COL1A1-207ENST00000486572 GJD4Q96KN9 370 aaPredicted RBP25.35■■□□□ 1.65
COL1A1-207ENST00000486572 NME9Q86XW9 330 aa25.34■■□□□ 1.65
COL1A1-207ENST00000486572 GLI3P10071 1580 aa25.34■■□□□ 1.65
COL1A1-207ENST00000486572 LMO7Q8WWI1 1683 aa25.32■■□□□ 1.64
COL1A1-207ENST00000486572 KCNH5Q8NCM2 988 aa25.32■■□□□ 1.64
COL1A1-207ENST00000486572 ZRANB1Q9UGI0 708 aa25.3■■□□□ 1.64
COL1A1-207ENST00000486572 CCDC9Q9Y3X0 531 aaKnown RBP25.3■■□□□ 1.64
COL1A1-207ENST00000486572 NFAT5O94916 1531 aa25.3■■□□□ 1.64
COL1A1-207ENST00000486572 CAMTA1Q9Y6Y1 1673 aa25.29■■□□□ 1.64
COL1A1-207ENST00000486572 OVOS2A0A0J9YW53 1432 aa25.29■■□□□ 1.64
COL1A1-207ENST00000486572 OVOS2Q6IE36 1432 aa25.29■■□□□ 1.64
COL1A1-207ENST00000486572 SOX12O15370 315 aa25.27■■□□□ 1.64
COL1A1-207ENST00000486572 POLR3GLQ9BT43 218 aa25.27■■□□□ 1.64
COL1A1-207ENST00000486572 AATKQ6ZMQ8 1374 aa25.27■■□□□ 1.64
COL1A1-207ENST00000486572 ZBTB7CA1YPR0 619 aa25.26■■□□□ 1.63
COL1A1-207ENST00000486572 STRN4Q9NRL3 753 aa25.25■■□□□ 1.63
COL1A1-207ENST00000486572 ARHGEF25Q86VW2 580 aa25.24■■□□□ 1.63
COL1A1-207ENST00000486572 COL5A2P05997 1499 aaPredicted RBP25.23■■□□□ 1.63
COL1A1-207ENST00000486572 SPATA31A5Q5VU36 1347 aa25.23■■□□□ 1.63
COL1A1-207ENST00000486572 SPATA31A7Q8IWB4 1347 aa25.23■■□□□ 1.63
COL1A1-207ENST00000486572 COL18A1P39060 1754 aa25.23■■□□□ 1.63
COL1A1-207ENST00000486572 ABCC6O95255 1503 aa25.22■■□□□ 1.63
COL1A1-207ENST00000486572 EVA1CP58658 441 aa25.22■■□□□ 1.63
COL1A1-207ENST00000486572 NSD3Q9BZ95 1437 aa25.21■■□□□ 1.63
COL1A1-207ENST00000486572 COG3Q96JB2 828 aa25.21■■□□□ 1.63
COL1A1-207ENST00000486572 KIF20BQ96Q89 1820 aa25.21■■□□□ 1.63
COL1A1-207ENST00000486572 CARD14Q9BXL6 1004 aa25.2■■□□□ 1.62
COL1A1-207ENST00000486572 SPATA31A1Q5TZJ5 1347 aa25.19■■□□□ 1.62
COL1A1-207ENST00000486572 C11orf95C9JLR9 678 aaPredicted RBP25.19■■□□□ 1.62
COL1A1-207ENST00000486572 ONECUT3O60422 494 aaPredicted RBP25.19■■□□□ 1.62
COL1A1-207ENST00000486572 LTN1O94822 1766 aa25.18■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms