RNA–Protein interactions for RNA: ENST00000485842.5

HPS4-214, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 973 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-214ENST00000485842 POLR3GLQ9BT43 218 aa16.53■□□□□ 0.24
HPS4-214ENST00000485842 SLC12A5Q9H2X9 1139 aa16.53■□□□□ 0.24
HPS4-214ENST00000485842 ABCA3Q99758 1704 aa16.53■□□□□ 0.24
HPS4-214ENST00000485842 KTN1Q86UP2 1357 aaKnown RBP16.51■□□□□ 0.23
HPS4-214ENST00000485842 NRKQ7Z2Y5 1582 aa16.51■□□□□ 0.23
HPS4-214ENST00000485842 MYOM1P52179 1685 aa16.51■□□□□ 0.23
HPS4-214ENST00000485842 CD163L1Q9NR16 1453 aa16.51■□□□□ 0.23
HPS4-214ENST00000485842 HAP1P54257 671 aaPredicted RBP16.51■□□□□ 0.23
HPS4-214ENST00000485842 PHF23Q9BUL5 403 aaPredicted RBP16.51■□□□□ 0.23
HPS4-214ENST00000485842 CPSF1Q10570 1443 aaKnown RBP16.51■□□□□ 0.23
HPS4-214ENST00000485842 NINLQ9Y2I6 1382 aa16.51■□□□□ 0.23
HPS4-214ENST00000485842 ADAMTS2O95450 1211 aa16.5■□□□□ 0.23
HPS4-214ENST00000485842 NUTM2GQ5VZR2 741 aa16.5■□□□□ 0.23
HPS4-214ENST00000485842 HDGFL2Q7Z4V5 671 aaPredicted RBP16.5■□□□□ 0.23
HPS4-214ENST00000485842 CABLES1Q8TDN4 633 aa16.5■□□□□ 0.23
HPS4-214ENST00000485842 TERF2IPQ9NYB0 399 aa16.5■□□□□ 0.23
HPS4-214ENST00000485842 A0A1W2PP64 1363 aa16.5■□□□□ 0.23
HPS4-214ENST00000485842 ZNF692Q9BU19 519 aaPredicted RBP16.49■□□□□ 0.23
HPS4-214ENST00000485842 BRD4O60885 1362 aaPredicted RBP16.49■□□□□ 0.23
HPS4-214ENST00000485842 MARF1Q9Y4F3 1742 aaKnown RBP16.48■□□□□ 0.23
HPS4-214ENST00000485842 CRYBG1Q9Y4K1 1723 aa16.48■□□□□ 0.23
HPS4-214ENST00000485842 ABTB2Q8N961 1025 aa16.48■□□□□ 0.23
HPS4-214ENST00000485842 PIK3C2AO00443 1686 aa16.47■□□□□ 0.23
HPS4-214ENST00000485842 PHRF1Q9P1Y6 1649 aaKnown RBP16.47■□□□□ 0.23
HPS4-214ENST00000485842 TTC21BQ7Z4L5 1316 aa16.46■□□□□ 0.23
HPS4-214ENST00000485842 SSH2Q76I76 1423 aa16.46■□□□□ 0.23
HPS4-214ENST00000485842 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.46■□□□□ 0.23
HPS4-214ENST00000485842 C8orf37Q96NL8 207 aa16.46■□□□□ 0.23
HPS4-214ENST00000485842 EDC4Q6P2E9 1401 aaKnown RBP16.45■□□□□ 0.22
HPS4-214ENST00000485842 ANKRD36BQ8N2N9 1353 aa16.45■□□□□ 0.22
HPS4-214ENST00000485842 TTC21AQ8NDW8 1320 aa16.45■□□□□ 0.22
HPS4-214ENST00000485842 C11orf95C9JLR9 678 aaPredicted RBP16.44■□□□□ 0.22
HPS4-214ENST00000485842 ZEB1P37275 1124 aaPredicted RBP16.44■□□□□ 0.22
HPS4-214ENST00000485842 NLRP6P59044 892 aa16.43■□□□□ 0.22
HPS4-214ENST00000485842 NLRP13Q86W25 1043 aa16.43■□□□□ 0.22
HPS4-214ENST00000485842 NGLY1Q96IV0 654 aa16.42■□□□□ 0.22
HPS4-214ENST00000485842 USP19O94966 1318 aa16.42■□□□□ 0.22
HPS4-214ENST00000485842 AFF2P51816 1311 aa16.42■□□□□ 0.22
HPS4-214ENST00000485842 KIF7Q2M1P5 1343 aa16.42■□□□□ 0.22
HPS4-214ENST00000485842 NME9Q86XW9 330 aa16.41■□□□□ 0.22
HPS4-214ENST00000485842 PLCH1Q4KWH8 1693 aa16.4■□□□□ 0.22
HPS4-214ENST00000485842 NSD3Q9BZ95 1437 aa16.39■□□□□ 0.21
HPS4-214ENST00000485842 RGS17Q9UGC6 210 aaPredicted RBP16.39■□□□□ 0.21
HPS4-214ENST00000485842 ZRANB1Q9UGI0 708 aa16.39■□□□□ 0.21
HPS4-214ENST00000485842 USP54Q70EL1 1684 aa16.39■□□□□ 0.21
HPS4-214ENST00000485842 SLIT3O75094 1523 aa16.39■□□□□ 0.21
HPS4-214ENST00000485842 KIF20BQ96Q89 1820 aa16.38■□□□□ 0.21
HPS4-214ENST00000485842 SOX12O15370 315 aa16.38■□□□□ 0.21
HPS4-214ENST00000485842 PRDM11Q9NQV5 511 aa16.38■□□□□ 0.21
HPS4-214ENST00000485842 COL14A1Q05707 1796 aaKnown RBP16.37■□□□□ 0.21
HPS4-214ENST00000485842 ZBTB7CA1YPR0 619 aa16.37■□□□□ 0.21
HPS4-214ENST00000485842 ZC3H6P61129 1189 aaKnown RBP16.37■□□□□ 0.21
HPS4-214ENST00000485842 KIAA0232Q92628 1395 aa16.37■□□□□ 0.21
HPS4-214ENST00000485842 CCDC7Q96M83 1385 aa16.37■□□□□ 0.21
HPS4-214ENST00000485842 GCP02774 474 aa16.36■□□□□ 0.21
HPS4-214ENST00000485842 ZNF772Q68DY9 489 aaPredicted RBP16.36■□□□□ 0.21
HPS4-214ENST00000485842 USP21Q9UK80 565 aa16.36■□□□□ 0.21
HPS4-214ENST00000485842 USP31Q70CQ4 1352 aa16.36■□□□□ 0.21
HPS4-214ENST00000485842 CHRNA2Q15822 529 aa16.35■□□□□ 0.21
HPS4-214ENST00000485842 CARD14Q9BXL6 1004 aa16.35■□□□□ 0.21
HPS4-214ENST00000485842 NWD2Q9ULI1 1742 aa16.35■□□□□ 0.21
HPS4-214ENST00000485842 WASHC2AQ641Q2 1341 aa16.35■□□□□ 0.21
HPS4-214ENST00000485842 OVOS2A0A0J9YW53 1432 aa16.35■□□□□ 0.21
HPS4-214ENST00000485842 OVOS2Q6IE36 1432 aa16.35■□□□□ 0.21
HPS4-214ENST00000485842 SLIT2O94813 1529 aa16.35■□□□□ 0.21
HPS4-214ENST00000485842 FAM83GA6ND36 823 aa16.34■□□□□ 0.21
HPS4-214ENST00000485842 POTEAQ6S8J7 498 aa16.34■□□□□ 0.21
HPS4-214ENST00000485842 FNBP4Q8N3X1 1017 aaPredicted RBP16.34■□□□□ 0.21
HPS4-214ENST00000485842 PANK3Q9H999 370 aa16.34■□□□□ 0.21
HPS4-214ENST00000485842 NFAT5O94916 1531 aa16.34■□□□□ 0.21
HPS4-214ENST00000485842 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.33■□□□□ 0.21
HPS4-214ENST00000485842 COG3Q96JB2 828 aa16.33■□□□□ 0.2
HPS4-214ENST00000485842 GGNBP2Q9H3C7 697 aa16.33■□□□□ 0.2
HPS4-214ENST00000485842 CPDO75976 1380 aa16.33■□□□□ 0.2
HPS4-214ENST00000485842 BCL9LQ86UU0 1499 aa16.32■□□□□ 0.2
HPS4-214ENST00000485842 NRAPQ86VF7 1730 aa16.32■□□□□ 0.2
HPS4-214ENST00000485842 KCNH5Q8NCM2 988 aa16.32■□□□□ 0.2
HPS4-214ENST00000485842 FYB1O15117 783 aa16.31■□□□□ 0.2
HPS4-214ENST00000485842 QTRT2Q9H974 415 aaKnown RBP16.31■□□□□ 0.2
HPS4-214ENST00000485842 BTG4Q9NY30 223 aa16.31■□□□□ 0.2
HPS4-214ENST00000485842 LTN1O94822 1766 aa16.31■□□□□ 0.2
HPS4-214ENST00000485842 CGNL1Q0VF96 1302 aa16.3■□□□□ 0.2
HPS4-214ENST00000485842 LMO7Q8WWI1 1683 aa16.3■□□□□ 0.2
HPS4-214ENST00000485842 ATRNO75882 1429 aa16.29■□□□□ 0.2
HPS4-214ENST00000485842 UNC5CLQ8IV45 518 aa16.29■□□□□ 0.2
HPS4-214ENST00000485842 TRPC5Q9UL62 973 aaPredicted RBP16.29■□□□□ 0.2
HPS4-214ENST00000485842 ANKRD26Q9UPS8 1709 aa16.28■□□□□ 0.2
HPS4-214ENST00000485842 ILDR2Q71H61 639 aa16.28■□□□□ 0.2
HPS4-214ENST00000485842 STRN4Q9NRL3 753 aa16.28■□□□□ 0.2
HPS4-214ENST00000485842 CAMTA1Q9Y6Y1 1673 aa16.27■□□□□ 0.2
HPS4-214ENST00000485842 ARHGEF25Q86VW2 580 aa16.27■□□□□ 0.2
HPS4-214ENST00000485842 CCDC9Q9Y3X0 531 aaKnown RBP16.27■□□□□ 0.2
HPS4-214ENST00000485842 KNSTRNQ9Y448 316 aa16.27■□□□□ 0.2
HPS4-214ENST00000485842 COL18A1P39060 1754 aa16.27■□□□□ 0.2
HPS4-214ENST00000485842 AATKQ6ZMQ8 1374 aa16.26■□□□□ 0.19
HPS4-214ENST00000485842 RGPD5Q99666 1765 aa16.26■□□□□ 0.19
HPS4-214ENST00000485842 RXRBP28702 533 aa16.26■□□□□ 0.19
HPS4-214ENST00000485842 FBLN1P23142 703 aa16.25■□□□□ 0.19
HPS4-214ENST00000485842 RBM6P78332 1123 aaKnown RBP16.25■□□□□ 0.19
HPS4-214ENST00000485842 GLI3P10071 1580 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms