RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 ALS2Q96Q42 1657 aa23.64■■□□□ 1.37
TRIM54-203ENST00000485306 ACEP12821 1306 aa23.63■■□□□ 1.37
TRIM54-203ENST00000485306 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.63■■□□□ 1.37
TRIM54-203ENST00000485306 QRICH2Q9H0J4 1663 aa23.63■■□□□ 1.37
TRIM54-203ENST00000485306 CABP2Q9NPB3 220 aa23.62■■□□□ 1.37
TRIM54-203ENST00000485306 POLR3AO14802 1390 aaPredicted RBP23.62■■□□□ 1.37
TRIM54-203ENST00000485306 ABCA3Q99758 1704 aa23.62■■□□□ 1.37
TRIM54-203ENST00000485306 TOPAZ1Q8N9V7 1692 aa23.6■■□□□ 1.37
TRIM54-203ENST00000485306 EVC2Q86UK5 1308 aa23.6■■□□□ 1.37
TRIM54-203ENST00000485306 FAM83GA6ND36 823 aa23.6■■□□□ 1.37
TRIM54-203ENST00000485306 PPIP5K1Q6PFW1 1433 aa23.59■■□□□ 1.37
TRIM54-203ENST00000485306 NWD2Q9ULI1 1742 aa23.58■■□□□ 1.37
TRIM54-203ENST00000485306 VPS72Q15906 364 aa23.57■■□□□ 1.36
TRIM54-203ENST00000485306 CCDC9Q9Y3X0 531 aaKnown RBP23.57■■□□□ 1.36
TRIM54-203ENST00000485306 ATAD2Q6PL18 1390 aa23.56■■□□□ 1.36
TRIM54-203ENST00000485306 TIMELESSQ9UNS1 1208 aa23.56■■□□□ 1.36
TRIM54-203ENST00000485306 PLCH1Q4KWH8 1693 aa23.56■■□□□ 1.36
TRIM54-203ENST00000485306 ABTB2Q8N961 1025 aa23.55■■□□□ 1.36
TRIM54-203ENST00000485306 CARD11Q9BXL7 1154 aa23.55■■□□□ 1.36
TRIM54-203ENST00000485306 RALGAPBQ86X10 1494 aa23.55■■□□□ 1.36
TRIM54-203ENST00000485306 BTG4Q9NY30 223 aa23.54■■□□□ 1.36
TRIM54-203ENST00000485306 CABP1Q9NZU7 370 aa23.54■■□□□ 1.36
TRIM54-203ENST00000485306 NUTM2GQ5VZR2 741 aa23.53■■□□□ 1.36
TRIM54-203ENST00000485306 BRD4O60885 1362 aaPredicted RBP23.52■■□□□ 1.36
TRIM54-203ENST00000485306 COL14A1Q05707 1796 aaKnown RBP23.52■■□□□ 1.36
TRIM54-203ENST00000485306 PRDM11Q9NQV5 511 aa23.52■■□□□ 1.36
TRIM54-203ENST00000485306 GLI3P10071 1580 aa23.5■■□□□ 1.35
TRIM54-203ENST00000485306 NLRP13Q86W25 1043 aa23.5■■□□□ 1.35
TRIM54-203ENST00000485306 CRYBG1Q9Y4K1 1723 aa23.5■■□□□ 1.35
TRIM54-203ENST00000485306 ZC3H6P61129 1189 aaKnown RBP23.48■■□□□ 1.35
TRIM54-203ENST00000485306 ZNF692Q9BU19 519 aaPredicted RBP23.48■■□□□ 1.35
TRIM54-203ENST00000485306 ONECUT3O60422 494 aaPredicted RBP23.47■■□□□ 1.35
TRIM54-203ENST00000485306 SEPT12Q8IYM1 358 aa23.47■■□□□ 1.35
TRIM54-203ENST00000485306 KIAA0232Q92628 1395 aa23.46■■□□□ 1.35
TRIM54-203ENST00000485306 PHRF1Q9P1Y6 1649 aaKnown RBP23.45■■□□□ 1.34
TRIM54-203ENST00000485306 CCDC125Q86Z20 511 aa23.45■■□□□ 1.34
TRIM54-203ENST00000485306 USP6P35125 1406 aa23.44■■□□□ 1.34
TRIM54-203ENST00000485306 SBNO2Q9Y2G9 1366 aa23.44■■□□□ 1.34
TRIM54-203ENST00000485306 NRAPQ86VF7 1730 aa23.44■■□□□ 1.34
TRIM54-203ENST00000485306 A0A0G2JS52 829 aa23.43■■□□□ 1.34
TRIM54-203ENST00000485306 ZEB1P37275 1124 aaPredicted RBP23.43■■□□□ 1.34
TRIM54-203ENST00000485306 MYT1Q01538 1121 aa23.43■■□□□ 1.34
TRIM54-203ENST00000485306 CHRNA2Q15822 529 aa23.43■■□□□ 1.34
TRIM54-203ENST00000485306 NLRP6P59044 892 aa23.42■■□□□ 1.34
TRIM54-203ENST00000485306 USP19O94966 1318 aa23.41■■□□□ 1.34
TRIM54-203ENST00000485306 GCP02774 474 aa23.41■■□□□ 1.34
TRIM54-203ENST00000485306 EVA1CP58658 441 aa23.41■■□□□ 1.34
TRIM54-203ENST00000485306 FAM98CQ17RN3 349 aaKnown RBP23.41■■□□□ 1.34
TRIM54-203ENST00000485306 SPATA31A5Q5VU36 1347 aa23.4■■□□□ 1.34
TRIM54-203ENST00000485306 SPATA31A7Q8IWB4 1347 aa23.4■■□□□ 1.34
TRIM54-203ENST00000485306 BRWD3Q6RI45 1802 aa23.4■■□□□ 1.34
TRIM54-203ENST00000485306 SLC24A1O60721 1099 aa23.39■■□□□ 1.33
TRIM54-203ENST00000485306 KRT27Q7Z3Y8 459 aa23.39■■□□□ 1.33
TRIM54-203ENST00000485306 STRN4Q9NRL3 753 aa23.39■■□□□ 1.33
TRIM54-203ENST00000485306 CPDO75976 1380 aa23.38■■□□□ 1.33
TRIM54-203ENST00000485306 NRKQ7Z2Y5 1582 aa23.36■■□□□ 1.33
TRIM54-203ENST00000485306 SSH2Q76I76 1423 aa23.36■■□□□ 1.33
TRIM54-203ENST00000485306 KTN1Q86UP2 1357 aaKnown RBP23.36■■□□□ 1.33
TRIM54-203ENST00000485306 TTC21BQ7Z4L5 1316 aa23.35■■□□□ 1.33
TRIM54-203ENST00000485306 TTC21AQ8NDW8 1320 aa23.35■■□□□ 1.33
TRIM54-203ENST00000485306 AKAP12Q02952 1782 aa23.35■■□□□ 1.33
TRIM54-203ENST00000485306 TMC1Q8TDI8 760 aa23.35■■□□□ 1.33
TRIM54-203ENST00000485306 PUS7Q96PZ0 661 aaKnown RBP23.34■■□□□ 1.33
TRIM54-203ENST00000485306 SPATA31A1Q5TZJ5 1347 aa23.33■■□□□ 1.33
TRIM54-203ENST00000485306 CPSF1Q10570 1443 aaKnown RBP23.33■■□□□ 1.33
TRIM54-203ENST00000485306 SF3B2Q13435 895 aaKnown RBP23.33■■□□□ 1.33
TRIM54-203ENST00000485306 ST20-MTHFSA0A0A6YYL1 179 aa23.32■■□□□ 1.32
TRIM54-203ENST00000485306 ZBTB7CA1YPR0 619 aa23.32■■□□□ 1.32
TRIM54-203ENST00000485306 HDGFL2Q7Z4V5 671 aaPredicted RBP23.32■■□□□ 1.32
TRIM54-203ENST00000485306 KCNH5Q8NCM2 988 aa23.32■■□□□ 1.32
TRIM54-203ENST00000485306 BLMP54132 1417 aaPredicted RBP23.31■■□□□ 1.32
TRIM54-203ENST00000485306 PIK3C2AO00443 1686 aa23.3■■□□□ 1.32
TRIM54-203ENST00000485306 CAMTA1Q9Y6Y1 1673 aa23.3■■□□□ 1.32
TRIM54-203ENST00000485306 USP35Q9P2H5 1018 aa23.3■■□□□ 1.32
TRIM54-203ENST00000485306 SLIT3O75094 1523 aa23.29■■□□□ 1.32
TRIM54-203ENST00000485306 TERF2IPQ9NYB0 399 aa23.29■■□□□ 1.32
TRIM54-203ENST00000485306 EP400Q96L91 3159 aa23.29■■□□□ 1.32
TRIM54-203ENST00000485306 LARP1Q6PKG0 1096 aaKnown RBP23.28■■□□□ 1.32
TRIM54-203ENST00000485306 TESK2Q96S53 571 aa23.28■■□□□ 1.32
TRIM54-203ENST00000485306 SLC12A5Q9H2X9 1139 aa23.28■■□□□ 1.32
TRIM54-203ENST00000485306 LMO7Q8WWI1 1683 aa23.28■■□□□ 1.32
TRIM54-203ENST00000485306 USP47Q96K76 1375 aa23.27■■□□□ 1.32
TRIM54-203ENST00000485306 BARGINQ6ZT62 677 aa23.27■■□□□ 1.32
TRIM54-203ENST00000485306 AATKQ6ZMQ8 1374 aa23.27■■□□□ 1.31
TRIM54-203ENST00000485306 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.26■■□□□ 1.31
TRIM54-203ENST00000485306 TCP11L2Q8N4U5 519 aa23.26■■□□□ 1.31
TRIM54-203ENST00000485306 THRAP3Q9Y2W1 955 aaKnown RBP23.26■■□□□ 1.31
TRIM54-203ENST00000485306 MON2Q7Z3U7 1717 aa23.25■■□□□ 1.31
TRIM54-203ENST00000485306 THSD7AQ9UPZ6 1657 aa23.24■■□□□ 1.31
TRIM54-203ENST00000485306 SOX12O15370 315 aa23.23■■□□□ 1.31
TRIM54-203ENST00000485306 ZRANB1Q9UGI0 708 aa23.23■■□□□ 1.31
TRIM54-203ENST00000485306 NINLQ9Y2I6 1382 aa23.23■■□□□ 1.31
TRIM54-203ENST00000485306 COL5A2P05997 1499 aaPredicted RBP23.23■■□□□ 1.31
TRIM54-203ENST00000485306 TMF1P82094 1093 aa23.22■■□□□ 1.31
TRIM54-203ENST00000485306 PDE3BQ13370 1112 aa23.22■■□□□ 1.31
TRIM54-203ENST00000485306 ARHGEF25Q86VW2 580 aa23.22■■□□□ 1.31
TRIM54-203ENST00000485306 CD163L1Q9NR16 1453 aa23.22■■□□□ 1.31
TRIM54-203ENST00000485306 CRB1P82279 1406 aa23.21■■□□□ 1.31
TRIM54-203ENST00000485306 EDC4Q6P2E9 1401 aaKnown RBP23.2■■□□□ 1.3
TRIM54-203ENST00000485306 USP31Q70CQ4 1352 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms