RNA–Protein interactions for RNA: ENST00000483778.5

ATG4B-221, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 3

Gene ATG4B, Length 1,103 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-221ENST00000483778 CCDC9Q9Y3X0 531 aaKnown RBP26.16■■□□□ 1.78
ATG4B-221ENST00000483778 ONECUT3O60422 494 aaPredicted RBP26.14■■□□□ 1.78
ATG4B-221ENST00000483778 SIN3AQ96ST3 1273 aa26.14■■□□□ 1.78
ATG4B-221ENST00000483778 BTG4Q9NY30 223 aa26.14■■□□□ 1.78
ATG4B-221ENST00000483778 TOPAZ1Q8N9V7 1692 aa26.12■■□□□ 1.77
ATG4B-221ENST00000483778 NUTM2GQ5VZR2 741 aa26.12■■□□□ 1.77
ATG4B-221ENST00000483778 L3MBTL2Q969R5 705 aa26.12■■□□□ 1.77
ATG4B-221ENST00000483778 COL14A1Q05707 1796 aaKnown RBP26.12■■□□□ 1.77
ATG4B-221ENST00000483778 ACEP12821 1306 aa26.11■■□□□ 1.77
ATG4B-221ENST00000483778 NBPF8Q3BBV2 869 aa26.1■■□□□ 1.77
ATG4B-221ENST00000483778 CCDC125Q86Z20 511 aa26.08■■□□□ 1.77
ATG4B-221ENST00000483778 CCDC61Q9Y6R9 512 aa26.08■■□□□ 1.77
ATG4B-221ENST00000483778 POLR3AO14802 1390 aaPredicted RBP26.07■■□□□ 1.76
ATG4B-221ENST00000483778 PLEKHG3A1L390 1219 aa26.07■■□□□ 1.76
ATG4B-221ENST00000483778 FAM98CQ17RN3 349 aaKnown RBP26.07■■□□□ 1.76
ATG4B-221ENST00000483778 CHRNA2Q15822 529 aa26.06■■□□□ 1.76
ATG4B-221ENST00000483778 PHRF1Q9P1Y6 1649 aaKnown RBP26.06■■□□□ 1.76
ATG4B-221ENST00000483778 DEFB132Q7Z7B7 95 aa26.05■■□□□ 1.76
ATG4B-221ENST00000483778 CABP2Q9NPB3 220 aa26.05■■□□□ 1.76
ATG4B-221ENST00000483778 QRICH2Q9H0J4 1663 aa26.04■■□□□ 1.76
ATG4B-221ENST00000483778 ZC3H6P61129 1189 aaKnown RBP26.04■■□□□ 1.76
ATG4B-221ENST00000483778 NEUROD1Q13562 356 aa26.04■■□□□ 1.76
ATG4B-221ENST00000483778 KRT27Q7Z3Y8 459 aa26.04■■□□□ 1.76
ATG4B-221ENST00000483778 PRDM11Q9NQV5 511 aa26.04■■□□□ 1.76
ATG4B-221ENST00000483778 CENPJQ9HC77 1338 aaPredicted RBP26.04■■□□□ 1.76
ATG4B-221ENST00000483778 KIAA0232Q92628 1395 aa26.04■■□□□ 1.76
ATG4B-221ENST00000483778 SPATA31A5Q5VU36 1347 aa26.02■■□□□ 1.76
ATG4B-221ENST00000483778 SPATA31A7Q8IWB4 1347 aa26.02■■□□□ 1.76
ATG4B-221ENST00000483778 BLMP54132 1417 aaPredicted RBP26.02■■□□□ 1.76
ATG4B-221ENST00000483778 SRPK2P78362 688 aaKnown RBP26.01■■□□□ 1.75
ATG4B-221ENST00000483778 FAM182BQ5T319 152 aa26.01■■□□□ 1.75
ATG4B-221ENST00000483778 A0A0G2JS52 829 aa26■■□□□ 1.75
ATG4B-221ENST00000483778 MYT1Q01538 1121 aa26■■□□□ 1.75
ATG4B-221ENST00000483778 TRPM1Q7Z4N2 1603 aa25.99■■□□□ 1.75
ATG4B-221ENST00000483778 PPIP5K1Q6PFW1 1433 aa25.98■■□□□ 1.75
ATG4B-221ENST00000483778 SRCAPQ6ZRS2 3230 aa25.98■■□□□ 1.75
ATG4B-221ENST00000483778 ABTB2Q8N961 1025 aa25.98■■□□□ 1.75
ATG4B-221ENST00000483778 ZRANB1Q9UGI0 708 aa25.98■■□□□ 1.75
ATG4B-221ENST00000483778 STRN4Q9NRL3 753 aa25.96■■□□□ 1.75
ATG4B-221ENST00000483778 CABP1Q9NZU7 370 aa25.95■■□□□ 1.74
ATG4B-221ENST00000483778 THSD7AQ9UPZ6 1657 aa25.93■■□□□ 1.74
ATG4B-221ENST00000483778 SPATA31A1Q5TZJ5 1347 aa25.93■■□□□ 1.74
ATG4B-221ENST00000483778 CAMTA1Q9Y6Y1 1673 aa25.93■■□□□ 1.74
ATG4B-221ENST00000483778 NRKQ7Z2Y5 1582 aa25.92■■□□□ 1.74
ATG4B-221ENST00000483778 USP19O94966 1318 aa25.91■■□□□ 1.74
ATG4B-221ENST00000483778 SF3B2Q13435 895 aaKnown RBP25.9■■□□□ 1.74
ATG4B-221ENST00000483778 LMO7Q8WWI1 1683 aa25.88■■□□□ 1.73
ATG4B-221ENST00000483778 GCP02774 474 aa25.88■■□□□ 1.73
ATG4B-221ENST00000483778 USP35Q9P2H5 1018 aa25.88■■□□□ 1.73
ATG4B-221ENST00000483778 EVA1CP58658 441 aa25.87■■□□□ 1.73
ATG4B-221ENST00000483778 LARP1Q6PKG0 1096 aaKnown RBP25.87■■□□□ 1.73
ATG4B-221ENST00000483778 NLRP13Q86W25 1043 aa25.87■■□□□ 1.73
ATG4B-221ENST00000483778 ROCK2O75116 1388 aaKnown RBP25.86■■□□□ 1.73
ATG4B-221ENST00000483778 USP6P35125 1406 aa25.86■■□□□ 1.73
ATG4B-221ENST00000483778 CPDO75976 1380 aa25.85■■□□□ 1.73
ATG4B-221ENST00000483778 SSH2Q76I76 1423 aa25.85■■□□□ 1.73
ATG4B-221ENST00000483778 EVC2Q86UK5 1308 aa25.85■■□□□ 1.73
ATG4B-221ENST00000483778 NLRP6P59044 892 aa25.83■■□□□ 1.73
ATG4B-221ENST00000483778 RGPD1P0DJD0 1748 aa25.83■■□□□ 1.72
ATG4B-221ENST00000483778 EN1Q05925 392 aaPredicted RBP25.82■■□□□ 1.72
ATG4B-221ENST00000483778 PIK3C2AO00443 1686 aa25.82■■□□□ 1.72
ATG4B-221ENST00000483778 AKAP12Q02952 1782 aa25.82■■□□□ 1.72
ATG4B-221ENST00000483778 TNS1Q9HBL0 1735 aaKnown RBP25.81■■□□□ 1.72
ATG4B-221ENST00000483778 ZBTB7CA1YPR0 619 aa25.8■■□□□ 1.72
ATG4B-221ENST00000483778 BAG6P46379 1132 aa25.79■■□□□ 1.72
ATG4B-221ENST00000483778 BRD4O60885 1362 aaPredicted RBP25.79■■□□□ 1.72
ATG4B-221ENST00000483778 COL18A1P39060 1754 aa25.79■■□□□ 1.72
ATG4B-221ENST00000483778 RGPD5Q99666 1765 aa25.79■■□□□ 1.72
ATG4B-221ENST00000483778 BARGINQ6ZT62 677 aa25.78■■□□□ 1.72
ATG4B-221ENST00000483778 PSDA5PKW4 1024 aaPredicted RBP25.77■■□□□ 1.72
ATG4B-221ENST00000483778 TRIM37O94972 964 aa25.77■■□□□ 1.72
ATG4B-221ENST00000483778 SLIT3O75094 1523 aa25.77■■□□□ 1.72
ATG4B-221ENST00000483778 TCP11L2Q8N4U5 519 aa25.76■■□□□ 1.71
ATG4B-221ENST00000483778 COL5A2P05997 1499 aaPredicted RBP25.76■■□□□ 1.71
ATG4B-221ENST00000483778 TTC21BQ7Z4L5 1316 aa25.75■■□□□ 1.71
ATG4B-221ENST00000483778 AXIN2Q9Y2T1 843 aa25.74■■□□□ 1.71
ATG4B-221ENST00000483778 EZH2Q15910 746 aaKnown RBP25.73■■□□□ 1.71
ATG4B-221ENST00000483778 FAM196AQ6ZSG2 479 aa25.73■■□□□ 1.71
ATG4B-221ENST00000483778 ZNF692Q9BU19 519 aaPredicted RBP25.72■■□□□ 1.71
ATG4B-221ENST00000483778 CPSF1Q10570 1443 aaKnown RBP25.71■■□□□ 1.71
ATG4B-221ENST00000483778 AATKQ6ZMQ8 1374 aa25.71■■□□□ 1.71
ATG4B-221ENST00000483778 PDE3BQ13370 1112 aa25.71■■□□□ 1.71
ATG4B-221ENST00000483778 CARD11Q9BXL7 1154 aa25.71■■□□□ 1.71
ATG4B-221ENST00000483778 SOX12O15370 315 aa25.7■■□□□ 1.7
ATG4B-221ENST00000483778 CAMKK2Q96RR4 588 aa25.7■■□□□ 1.7
ATG4B-221ENST00000483778 PARP4Q9UKK3 1724 aaKnown RBP25.68■■□□□ 1.7
ATG4B-221ENST00000483778 ARHGEF25Q86VW2 580 aa25.68■■□□□ 1.7
ATG4B-221ENST00000483778 THRAP3Q9Y2W1 955 aaKnown RBP25.68■■□□□ 1.7
ATG4B-221ENST00000483778 DISP2A7MBM2 1401 aa25.68■■□□□ 1.7
ATG4B-221ENST00000483778 KTN1Q86UP2 1357 aaKnown RBP25.68■■□□□ 1.7
ATG4B-221ENST00000483778 APBA3O96018 575 aa25.67■■□□□ 1.7
ATG4B-221ENST00000483778 CRB1P82279 1406 aa25.67■■□□□ 1.7
ATG4B-221ENST00000483778 MON2Q7Z3U7 1717 aa25.67■■□□□ 1.7
ATG4B-221ENST00000483778 R3HDM1Q15032 1099 aaKnown RBP25.65■■□□□ 1.7
ATG4B-221ENST00000483778 CD163L1Q9NR16 1453 aa25.65■■□□□ 1.7
ATG4B-221ENST00000483778 TTC21AQ8NDW8 1320 aa25.64■■□□□ 1.7
ATG4B-221ENST00000483778 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.64■■□□□ 1.71e-8■□□□□ 9.2
ATG4B-221ENST00000483778 SLC12A5Q9H2X9 1139 aa25.64■■□□□ 1.7
ATG4B-221ENST00000483778 SBF2Q86WG5 1849 aa25.64■■□□□ 1.7
ATG4B-221ENST00000483778 TOM1L2Q6ZVM7 507 aa25.63■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms