RNA–Protein interactions for RNA: ENST00000483631.1

HPS4-213, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 737 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-213ENST00000483631 COL14A1Q05707 1796 aaKnown RBP28.56■■■□□ 2.16
HPS4-213ENST00000483631 SIN3AQ96ST3 1273 aa28.55■■■□□ 2.16
HPS4-213ENST00000483631 QRICH2Q9H0J4 1663 aa28.54■■■□□ 2.16
HPS4-213ENST00000483631 FAM83GA6ND36 823 aa28.54■■■□□ 2.16
HPS4-213ENST00000483631 NRAPQ86VF7 1730 aa28.53■■■□□ 2.16
HPS4-213ENST00000483631 PAK3O75914 559 aaPredicted RBP28.53■■■□□ 2.16
HPS4-213ENST00000483631 ACEP12821 1306 aa28.51■■■□□ 2.15
HPS4-213ENST00000483631 NBPF8Q3BBV2 869 aa28.51■■■□□ 2.15
HPS4-213ENST00000483631 CCDC125Q86Z20 511 aa28.51■■■□□ 2.15
HPS4-213ENST00000483631 ONECUT3O60422 494 aaPredicted RBP28.5■■■□□ 2.15
HPS4-213ENST00000483631 PLEKHG5O94827 1062 aa28.5■■■□□ 2.15
HPS4-213ENST00000483631 BRD4O60885 1362 aaPredicted RBP28.49■■■□□ 2.15
HPS4-213ENST00000483631 SRPK2P78362 688 aaKnown RBP28.48■■■□□ 2.15
HPS4-213ENST00000483631 NEUROD1Q13562 356 aa28.48■■■□□ 2.15
HPS4-213ENST00000483631 PHRF1Q9P1Y6 1649 aaKnown RBP28.47■■■□□ 2.15
HPS4-213ENST00000483631 BRWD3Q6RI45 1802 aa28.47■■■□□ 2.15
HPS4-213ENST00000483631 PPIP5K1Q6PFW1 1433 aa28.46■■■□□ 2.15
HPS4-213ENST00000483631 ROCK2O75116 1388 aaKnown RBP28.46■■■□□ 2.15
HPS4-213ENST00000483631 BTG4Q9NY30 223 aa28.45■■■□□ 2.14
HPS4-213ENST00000483631 EP400Q96L91 3159 aa28.43■■■□□ 2.14
HPS4-213ENST00000483631 SEPT12Q8IYM1 358 aa28.43■■■□□ 2.14
HPS4-213ENST00000483631 PRDM11Q9NQV5 511 aa28.43■■■□□ 2.14
HPS4-213ENST00000483631 CCDC9Q9Y3X0 531 aaKnown RBP28.43■■■□□ 2.14
HPS4-213ENST00000483631 CABP2Q9NPB3 220 aa28.42■■■□□ 2.14
HPS4-213ENST00000483631 EVC2Q86UK5 1308 aa28.42■■■□□ 2.14
HPS4-213ENST00000483631 KIAA0232Q92628 1395 aa28.38■■■□□ 2.13
HPS4-213ENST00000483631 ABTB2Q8N961 1025 aa28.38■■■□□ 2.13
HPS4-213ENST00000483631 USP19O94966 1318 aa28.37■■■□□ 2.13
HPS4-213ENST00000483631 SPATA31A5Q5VU36 1347 aa28.37■■■□□ 2.13
HPS4-213ENST00000483631 SPATA31A7Q8IWB4 1347 aa28.37■■■□□ 2.13
HPS4-213ENST00000483631 NRKQ7Z2Y5 1582 aa28.37■■■□□ 2.13
HPS4-213ENST00000483631 BLMP54132 1417 aaPredicted RBP28.36■■■□□ 2.13
HPS4-213ENST00000483631 CPDO75976 1380 aa28.36■■■□□ 2.13
HPS4-213ENST00000483631 NLRP13Q86W25 1043 aa28.35■■■□□ 2.13
HPS4-213ENST00000483631 SBNO2Q9Y2G9 1366 aa28.35■■■□□ 2.13
HPS4-213ENST00000483631 USP6P35125 1406 aa28.35■■■□□ 2.13
HPS4-213ENST00000483631 TRIM26Q12899 539 aaPredicted RBP28.34■■■□□ 2.13
HPS4-213ENST00000483631 KRT27Q7Z3Y8 459 aa28.34■■■□□ 2.13
HPS4-213ENST00000483631 CABP1Q9NZU7 370 aa28.34■■■□□ 2.13
HPS4-213ENST00000483631 NUTM2GQ5VZR2 741 aa28.32■■■□□ 2.12
HPS4-213ENST00000483631 TONSLQ96HA7 1378 aa28.32■■■□□ 2.12
HPS4-213ENST00000483631 FAM98CQ17RN3 349 aaKnown RBP28.31■■■□□ 2.12
HPS4-213ENST00000483631 THSD7AQ9UPZ6 1657 aa28.3■■■□□ 2.12
HPS4-213ENST00000483631 SSH2Q76I76 1423 aa28.3■■■□□ 2.12
HPS4-213ENST00000483631 ZC3H6P61129 1189 aaKnown RBP28.3■■■□□ 2.12
HPS4-213ENST00000483631 ZNF692Q9BU19 519 aaPredicted RBP28.29■■■□□ 2.12
HPS4-213ENST00000483631 LMO7Q8WWI1 1683 aa28.29■■■□□ 2.12
HPS4-213ENST00000483631 CHRNA2Q15822 529 aa28.28■■■□□ 2.12
HPS4-213ENST00000483631 AKAP12Q02952 1782 aa28.28■■■□□ 2.12
HPS4-213ENST00000483631 SPATA31A1Q5TZJ5 1347 aa28.27■■■□□ 2.12
HPS4-213ENST00000483631 GCP02774 474 aa28.27■■■□□ 2.12
HPS4-213ENST00000483631 A0A0G2JS52 829 aa28.26■■■□□ 2.11
HPS4-213ENST00000483631 MYT1Q01538 1121 aa28.26■■■□□ 2.11
HPS4-213ENST00000483631 SLIT3O75094 1523 aa28.25■■■□□ 2.11
HPS4-213ENST00000483631 CARD11Q9BXL7 1154 aa28.25■■■□□ 2.11
HPS4-213ENST00000483631 CAMTA1Q9Y6Y1 1673 aa28.24■■■□□ 2.11
HPS4-213ENST00000483631 SF3B2Q13435 895 aaKnown RBP28.24■■■□□ 2.11
HPS4-213ENST00000483631 PIK3C2AO00443 1686 aa28.23■■■□□ 2.11
HPS4-213ENST00000483631 NLRP6P59044 892 aa28.22■■■□□ 2.11
HPS4-213ENST00000483631 ZRANB1Q9UGI0 708 aa28.22■■■□□ 2.11
HPS4-213ENST00000483631 CPSF1Q10570 1443 aaKnown RBP28.21■■■□□ 2.11
HPS4-213ENST00000483631 EVA1CP58658 441 aa28.21■■■□□ 2.11
HPS4-213ENST00000483631 STRN4Q9NRL3 753 aa28.21■■■□□ 2.11
HPS4-213ENST00000483631 TTC21AQ8NDW8 1320 aa28.2■■■□□ 2.11
HPS4-213ENST00000483631 BARGINQ6ZT62 677 aa28.2■■■□□ 2.1
HPS4-213ENST00000483631 RGPD1P0DJD0 1748 aa28.18■■■□□ 2.1
HPS4-213ENST00000483631 TTC21BQ7Z4L5 1316 aa28.18■■■□□ 2.1
HPS4-213ENST00000483631 AATKQ6ZMQ8 1374 aa28.17■■■□□ 2.1
HPS4-213ENST00000483631 MON2Q7Z3U7 1717 aa28.17■■■□□ 2.1
HPS4-213ENST00000483631 COL5A2P05997 1499 aaPredicted RBP28.16■■■□□ 2.1
HPS4-213ENST00000483631 PUS7Q96PZ0 661 aaKnown RBP28.16■■■□□ 2.1
HPS4-213ENST00000483631 THRAP3Q9Y2W1 955 aaKnown RBP28.16■■■□□ 2.1
HPS4-213ENST00000483631 KCNH5Q8NCM2 988 aa28.14■■■□□ 2.1
HPS4-213ENST00000483631 KTN1Q86UP2 1357 aaKnown RBP28.13■■■□□ 2.09
HPS4-213ENST00000483631 LARP1Q6PKG0 1096 aaKnown RBP28.13■■■□□ 2.09
HPS4-213ENST00000483631 DEFB132Q7Z7B7 95 aa28.13■■■□□ 2.09
HPS4-213ENST00000483631 TCP11L2Q8N4U5 519 aa28.13■■■□□ 2.09
HPS4-213ENST00000483631 COL18A1P39060 1754 aa28.12■■■□□ 2.09
HPS4-213ENST00000483631 SLC24A1O60721 1099 aa28.12■■■□□ 2.09
HPS4-213ENST00000483631 BAG6P46379 1132 aa28.12■■■□□ 2.09
HPS4-213ENST00000483631 CRB1P82279 1406 aa28.1■■■□□ 2.09
HPS4-213ENST00000483631 USP54Q70EL1 1684 aa28.1■■■□□ 2.09
HPS4-213ENST00000483631 FAM196AQ6ZSG2 479 aa28.1■■■□□ 2.09
HPS4-213ENST00000483631 DISP2A7MBM2 1401 aa28.09■■■□□ 2.09
HPS4-213ENST00000483631 USP35Q9P2H5 1018 aa28.09■■■□□ 2.09
HPS4-213ENST00000483631 PARP4Q9UKK3 1724 aaKnown RBP28.09■■■□□ 2.09
HPS4-213ENST00000483631 CD163L1Q9NR16 1453 aa28.08■■■□□ 2.09
HPS4-213ENST00000483631 ABCC6O95255 1503 aa28.08■■■□□ 2.08
HPS4-213ENST00000483631 TNS1Q9HBL0 1735 aaKnown RBP28.07■■■□□ 2.08
HPS4-213ENST00000483631 USP31Q70CQ4 1352 aa28.07■■■□□ 2.08
HPS4-213ENST00000483631 ARHGEF25Q86VW2 580 aa28.06■■■□□ 2.08
HPS4-213ENST00000483631 NFAT5O94916 1531 aa28.05■■■□□ 2.08
HPS4-213ENST00000483631 NINLQ9Y2I6 1382 aa28.04■■■□□ 2.08
HPS4-213ENST00000483631 PDE3BQ13370 1112 aa28.04■■■□□ 2.08
HPS4-213ENST00000483631 HDGFL2Q7Z4V5 671 aaPredicted RBP28.04■■■□□ 2.08
HPS4-213ENST00000483631 C11orf95C9JLR9 678 aaPredicted RBP28.03■■■□□ 2.08
HPS4-213ENST00000483631 FAM182BQ5T319 152 aa28.03■■■□□ 2.08
HPS4-213ENST00000483631 TESK2Q96S53 571 aa28.02■■■□□ 2.08
HPS4-213ENST00000483631 TERF2IPQ9NYB0 399 aa28.02■■■□□ 2.08
HPS4-213ENST00000483631 EDC4Q6P2E9 1401 aaKnown RBP28.01■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms