RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 PNMA1Q8ND90 353 aa12.65□□□□□ -0.38
USP40-213ENST00000483216 BAP1Q92560 729 aa12.65□□□□□ -0.38
USP40-213ENST00000483216 GPKOWQ92917 476 aaPredicted RBP eCLIP12.65□□□□□ -0.38
USP40-213ENST00000483216 FKBPLQ9UIM3 349 aa12.65□□□□□ -0.38
USP40-213ENST00000483216 ZC3H4Q9UPT8 1303 aaKnown RBP12.64□□□□□ -0.39
USP40-213ENST00000483216 WNT7BP56706 349 aa12.64□□□□□ -0.39
USP40-213ENST00000483216 NBPF14Q5TI25 921 aa12.63□□□□□ -0.39
USP40-213ENST00000483216 ZNF511Q8NB15 262 aa12.62□□□□□ -0.39
USP40-213ENST00000483216 NDUFB9Q9Y6M9 179 aa12.62□□□□□ -0.39
USP40-213ENST00000483216 SH3BP2P78314 561 aa12.61□□□□□ -0.39
USP40-213ENST00000483216 SKOR1P84550 965 aa12.61□□□□□ -0.39
USP40-213ENST00000483216 ZNF697Q5TEC3 545 aa12.61□□□□□ -0.39
USP40-213ENST00000483216 PRM3Q9NNZ6 103 aa12.61□□□□□ -0.39
USP40-213ENST00000483216 LINC01559Q495D7 138 aa12.6□□□□□ -0.39
USP40-213ENST00000483216 PDXDC2PQ6P474 469 aa12.59□□□□□ -0.39
USP40-213ENST00000483216 GPR37L1O60883 481 aa12.57□□□□□ -0.4
USP40-213ENST00000483216 WNT7AO00755 349 aa12.56□□□□□ -0.4
USP40-213ENST00000483216 SH3BP5LQ7L8J4 393 aa12.56□□□□□ -0.4
USP40-213ENST00000483216 BPHLQ86WA6 291 aaPredicted RBP12.56□□□□□ -0.4
USP40-213ENST00000483216 TBC1D2BQ9UPU7 963 aa12.56□□□□□ -0.4
USP40-213ENST00000483216 GPSM3Q9Y4H4 160 aa12.56□□□□□ -0.4
USP40-213ENST00000483216 UBTFP17480 764 aaKnown RBP12.55□□□□□ -0.4
USP40-213ENST00000483216 RC3H1Q5TC82 1133 aaKnown RBP12.55□□□□□ -0.4
USP40-213ENST00000483216 SH3RF1Q7Z6J0 888 aa12.55□□□□□ -0.4
USP40-213ENST00000483216 FOXJ1Q92949 421 aa12.54□□□□□ -0.4
USP40-213ENST00000483216 COG6Q9Y2V7 657 aa12.54□□□□□ -0.4
USP40-213ENST00000483216 GDF9O60383 454 aa12.53□□□□□ -0.4
USP40-213ENST00000483216 PTK2Q05397 1052 aa12.53□□□□□ -0.4
USP40-213ENST00000483216 GDPD2Q9HCC8 539 aa12.53□□□□□ -0.4
USP40-213ENST00000483216 PKD2L1Q9P0L9 805 aa12.53□□□□□ -0.4
USP40-213ENST00000483216 VARSP26640 1264 aaKnown RBP12.52□□□□□ -0.41
USP40-213ENST00000483216 AGERQ15109 404 aa12.52□□□□□ -0.41
USP40-213ENST00000483216 EHBP1Q8NDI1 1231 aa12.52□□□□□ -0.41
USP40-213ENST00000483216 RAD21O60216 631 aa12.51□□□□□ -0.41
USP40-213ENST00000483216 PRR20EP86478 221 aa12.51□□□□□ -0.41
USP40-213ENST00000483216 PRR20CP86479 221 aa12.51□□□□□ -0.41
USP40-213ENST00000483216 PRR20DP86480 221 aa12.51□□□□□ -0.41
USP40-213ENST00000483216 PRR20BP86481 221 aa12.51□□□□□ -0.41
USP40-213ENST00000483216 PRR20AP86496 221 aa12.51□□□□□ -0.41
USP40-213ENST00000483216 C4orf48Q5BLP8 95 aa12.51□□□□□ -0.41
USP40-213ENST00000483216 TRIM67Q6ZTA4 783 aa12.51□□□□□ -0.41
USP40-213ENST00000483216 ARHGAP9Q9BRR9 750 aa12.51□□□□□ -0.41
USP40-213ENST00000483216 FOXC1Q12948 553 aa12.5□□□□□ -0.41
USP40-213ENST00000483216 POM121Q96HA1 1249 aa12.5□□□□□ -0.41
USP40-213ENST00000483216 MRGPRX2Q96LB1 330 aa12.5□□□□□ -0.41
USP40-213ENST00000483216 OCSTAMPQ9BR26 566 aa12.49□□□□□ -0.41
USP40-213ENST00000483216 ZBBXA8MT70 800 aa12.48□□□□□ -0.41
USP40-213ENST00000483216 ABL2P42684 1182 aa12.48□□□□□ -0.41
USP40-213ENST00000483216 IRF5Q13568 498 aa12.48□□□□□ -0.41
USP40-213ENST00000483216 C1QTNF2Q9BXJ5 285 aa12.48□□□□□ -0.41
USP40-213ENST00000483216 SIAH2O43255 324 aa12.47□□□□□ -0.41
USP40-213ENST00000483216 FAM174AQ8TBP5 190 aa12.47□□□□□ -0.41
USP40-213ENST00000483216 MAGEB6P1A0A0J9YX57 407 aa12.46□□□□□ -0.41
USP40-213ENST00000483216 NR1H3Q13133 447 aa12.46□□□□□ -0.41
USP40-213ENST00000483216 ZBTB33Q86T24 672 aa12.46□□□□□ -0.41
USP40-213ENST00000483216 MPNDQ8N594 471 aa12.46□□□□□ -0.41
USP40-213ENST00000483216 PDZRN3Q9UPQ7 1066 aa12.46□□□□□ -0.41
USP40-213ENST00000483216 TNFRSF10AO00220 468 aa12.45□□□□□ -0.42
USP40-213ENST00000483216 FBXO45P0C2W1 286 aa12.45□□□□□ -0.42
USP40-213ENST00000483216 TRMT44Q8IYL2 757 aaKnown RBP12.45□□□□□ -0.42
USP40-213ENST00000483216 CARD14Q9BXL6 1004 aa12.45□□□□□ -0.42
USP40-213ENST00000483216 A6NJR5 290 aa12.44□□□□□ -0.42
USP40-213ENST00000483216 ERFEQ4G0M1 354 aa12.44□□□□□ -0.42
USP40-213ENST00000483216 SNIP1Q8TAD8 396 aaKnown RBP12.44□□□□□ -0.42
USP40-213ENST00000483216 ADAM32Q8TC27 787 aa12.44□□□□□ -0.42
USP40-213ENST00000483216 WASHC4Q2M389 1173 aa12.43□□□□□ -0.42
USP40-213ENST00000483216 WWC1Q8IX03 1113 aa12.43□□□□□ -0.42
USP40-213ENST00000483216 CLUAP1Q96AJ1 413 aa12.43□□□□□ -0.42
USP40-213ENST00000483216 TOR4AQ9NXH8 423 aa12.43□□□□□ -0.42
USP40-213ENST00000483216 CYP4X1Q8N118 509 aa12.42□□□□□ -0.42
USP40-213ENST00000483216 CDK15Q96Q40 435 aa12.41□□□□□ -0.42
USP40-213ENST00000483216 ZNF330Q9Y3S2 320 aaPredicted RBP12.41□□□□□ -0.42
USP40-213ENST00000483216 TTC24A2A3L6 582 aaPredicted RBP12.39□□□□□ -0.43
USP40-213ENST00000483216 GFRA3O60609 400 aa12.39□□□□□ -0.43
USP40-213ENST00000483216 LAPTM4AQ15012 233 aa12.39□□□□□ -0.43
USP40-213ENST00000483216 FNBP4Q8N3X1 1017 aaPredicted RBP12.39□□□□□ -0.43
USP40-213ENST00000483216 CDV3Q9UKY7 258 aaKnown RBP12.39□□□□□ -0.43
USP40-213ENST00000483216 MAP4K5Q9Y4K4 846 aa12.39□□□□□ -0.43
USP40-213ENST00000483216 NRG2O14511 850 aaPredicted RBP12.38□□□□□ -0.43
USP40-213ENST00000483216 MCCD1P59942 119 aaPredicted RBP12.38□□□□□ -0.43
USP40-213ENST00000483216 PROSER2Q86WR7 435 aaPredicted RBP12.38□□□□□ -0.43
USP40-213ENST00000483216 ZNF592Q92610 1267 aa12.38□□□□□ -0.43
USP40-213ENST00000483216 SLC10A4Q96EP9 437 aa12.38□□□□□ -0.43
USP40-213ENST00000483216 TLL2Q9Y6L7 1015 aa12.38□□□□□ -0.43
USP40-213ENST00000483216 VAC14Q08AM6 782 aa12.37□□□□□ -0.43
USP40-213ENST00000483216 DZIP3Q86Y13 1208 aaKnown RBP12.37□□□□□ -0.43
USP40-213ENST00000483216 IRX2Q9BZI1 471 aaPredicted RBP12.37□□□□□ -0.43
USP40-213ENST00000483216 ALDH1A1P00352 501 aa12.36□□□□□ -0.43
USP40-213ENST00000483216 EIF4G2P78344 907 aaKnown RBP eCLIP12.35□□□□□ -0.43
USP40-213ENST00000483216 ZMYND15Q9H091 742 aa12.35□□□□□ -0.43
USP40-213ENST00000483216 J3QL48 77 aa12.34□□□□□ -0.43
USP40-213ENST00000483216 ADH1CP00326 375 aa12.34□□□□□ -0.43
USP40-213ENST00000483216 ARID5BQ14865 1188 aa12.34□□□□□ -0.43
USP40-213ENST00000483216 ERICH6Q7L0X2 663 aa12.34□□□□□ -0.43
USP40-213ENST00000483216 VASH1Q7L8A9 365 aaPredicted RBP12.34□□□□□ -0.43
USP40-213ENST00000483216 PCDHB9Q9Y5E1 797 aa12.34□□□□□ -0.43
USP40-213ENST00000483216 SMPD1P17405 629 aa12.33□□□□□ -0.44
USP40-213ENST00000483216 SOX11P35716 441 aa12.33□□□□□ -0.44
USP40-213ENST00000483216 GRM5P41594 1212 aa12.33□□□□□ -0.44
USP40-213ENST00000483216 NR5A1Q13285 461 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms