RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 PLSCR2Q9NRY7 297 aa11.27□□□□□ -0.61
USP4-210ENST00000483212 KIF1AQ12756 1690 aa11.27□□□□□ -0.61
USP4-210ENST00000483212 KIF20BQ96Q89 1820 aa11.26□□□□□ -0.61
USP4-210ENST00000483212 RALBP1Q15311 655 aa11.26□□□□□ -0.61
USP4-210ENST00000483212 CC2D1BQ5T0F9 858 aaKnown RBP11.26□□□□□ -0.61
USP4-210ENST00000483212 CADPS2Q86UW7 1296 aa11.26□□□□□ -0.61
USP4-210ENST00000483212 PMFBP1Q8TBY8 1022 aa11.26□□□□□ -0.61
USP4-210ENST00000483212 ORAI2Q96SN7 254 aa11.26□□□□□ -0.61
USP4-210ENST00000483212 ZNF692Q9BU19 519 aaPredicted RBP11.26□□□□□ -0.61
USP4-210ENST00000483212 PHF8Q9UPP1 1060 aa11.26□□□□□ -0.61
USP4-210ENST00000483212 CGNL1Q0VF96 1302 aa11.26□□□□□ -0.61
USP4-210ENST00000483212 FYB1O15117 783 aa11.25□□□□□ -0.61
USP4-210ENST00000483212 ATF3P18847 181 aa11.25□□□□□ -0.61
USP4-210ENST00000483212 CCDC184Q52MB2 194 aa11.24□□□□□ -0.61
USP4-210ENST00000483212 TTC21BQ7Z4L5 1316 aa11.24□□□□□ -0.61
USP4-210ENST00000483212 MYBBP1AQ9BQG0 1328 aaKnown RBP11.24□□□□□ -0.61
USP4-210ENST00000483212 USP54Q70EL1 1684 aa11.24□□□□□ -0.61
USP4-210ENST00000483212 TRPM3Q9HCF6 1732 aaPredicted RBP11.23□□□□□ -0.61
USP4-210ENST00000483212 CNGB1Q14028 1251 aaPredicted RBP11.23□□□□□ -0.61
USP4-210ENST00000483212 ESCO1Q5FWF5 840 aa11.23□□□□□ -0.61
USP4-210ENST00000483212 BRD4O60885 1362 aaPredicted RBP11.23□□□□□ -0.61
USP4-210ENST00000483212 OVOS2A0A0J9YW53 1432 aa11.23□□□□□ -0.61
USP4-210ENST00000483212 OVOS2Q6IE36 1432 aa11.23□□□□□ -0.61
USP4-210ENST00000483212 PIK3C2AO00443 1686 aa11.23□□□□□ -0.61
USP4-210ENST00000483212 NME9Q86XW9 330 aa11.22□□□□□ -0.61
USP4-210ENST00000483212 NGDNQ8NEJ9 315 aaKnown RBP11.22□□□□□ -0.61
USP4-210ENST00000483212 GGNBP2Q9H3C7 697 aa11.22□□□□□ -0.61
USP4-210ENST00000483212 MARF1Q9Y4F3 1742 aaKnown RBP11.22□□□□□ -0.61
USP4-210ENST00000483212 USP31Q70CQ4 1352 aa11.21□□□□□ -0.61
USP4-210ENST00000483212 TTC21AQ8NDW8 1320 aa11.21□□□□□ -0.61
USP4-210ENST00000483212 PPP2R1AP30153 589 aa11.21□□□□□ -0.61
USP4-210ENST00000483212 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.21□□□□□ -0.61
USP4-210ENST00000483212 PXDNQ92626 1479 aa11.2□□□□□ -0.62
USP4-210ENST00000483212 BRINP3Q76B58 766 aa11.2□□□□□ -0.62
USP4-210ENST00000483212 SLAIN2Q9P270 581 aa11.2□□□□□ -0.62
USP4-210ENST00000483212 ZRANB1Q9UGI0 708 aa11.2□□□□□ -0.62
USP4-210ENST00000483212 IQSEC2Q5JU85 1478 aa11.19□□□□□ -0.62
USP4-210ENST00000483212 FOXO3O43524 673 aa11.19□□□□□ -0.62
USP4-210ENST00000483212 MORC1Q86VD1 984 aa11.19□□□□□ -0.62
USP4-210ENST00000483212 NLRP13Q86W25 1043 aa11.19□□□□□ -0.62
USP4-210ENST00000483212 SMG6Q86US8 1419 aaKnown RBP11.18□□□□□ -0.62
USP4-210ENST00000483212 ALS2Q96Q42 1657 aa11.18□□□□□ -0.62
USP4-210ENST00000483212 NHSL1Q5SYE7 1610 aa11.18□□□□□ -0.62
USP4-210ENST00000483212 AATKQ6ZMQ8 1374 aa11.17□□□□□ -0.62
USP4-210ENST00000483212 DSG3P32926 999 aa11.17□□□□□ -0.62
USP4-210ENST00000483212 SBNO1A3KN83 1393 aa11.16□□□□□ -0.62
USP4-210ENST00000483212 PSME1Q06323 249 aa11.16□□□□□ -0.62
USP4-210ENST00000483212 KRT28Q7Z3Y7 464 aa11.16□□□□□ -0.62
USP4-210ENST00000483212 DDX17Q92841 729 aaKnown RBP11.16□□□□□ -0.62
USP4-210ENST00000483212 MRS2Q9HD23 443 aa11.16□□□□□ -0.62
USP4-210ENST00000483212 COL3A1P02461 1466 aaPredicted RBP11.16□□□□□ -0.62
USP4-210ENST00000483212 SLIT3O75094 1523 aa11.15□□□□□ -0.62
USP4-210ENST00000483212 SOS2Q07890 1332 aaPredicted RBP11.15□□□□□ -0.62
USP4-210ENST00000483212 NPHP3Q7Z494 1330 aa11.15□□□□□ -0.62
USP4-210ENST00000483212 ROBO1Q9Y6N7 1651 aa11.15□□□□□ -0.62
USP4-210ENST00000483212 XPCQ01831 940 aaPredicted RBP11.15□□□□□ -0.62
USP4-210ENST00000483212 COG3Q96JB2 828 aa11.15□□□□□ -0.62
USP4-210ENST00000483212 AHDC1Q5TGY3 1603 aaPredicted RBP11.15□□□□□ -0.62
USP4-210ENST00000483212 NFAT5O94916 1531 aa11.14□□□□□ -0.63
USP4-210ENST00000483212 TNNT2P45379 298 aaPredicted RBP11.14□□□□□ -0.63
USP4-210ENST00000483212 PNISRQ8TF01 805 aaKnown RBP11.14□□□□□ -0.63
USP4-210ENST00000483212 TNS3Q68CZ2 1445 aa11.14□□□□□ -0.63
USP4-210ENST00000483212 MED1Q15648 1581 aaPredicted RBP11.14□□□□□ -0.63
USP4-210ENST00000483212 CRYBG1Q9Y4K1 1723 aa11.14□□□□□ -0.63
USP4-210ENST00000483212 INSRP06213 1382 aa11.14□□□□□ -0.63
USP4-210ENST00000483212 PNPLA6Q8IY17 1366 aa11.14□□□□□ -0.63
USP4-210ENST00000483212 SHPRHQ149N8 1683 aa11.14□□□□□ -0.63
USP4-210ENST00000483212 USP19O94966 1318 aa11.13□□□□□ -0.63
USP4-210ENST00000483212 FBLN1P23142 703 aa11.13□□□□□ -0.63
USP4-210ENST00000483212 MTHFSP49914 203 aa11.13□□□□□ -0.63
USP4-210ENST00000483212 POLKQ9UBT6 870 aa11.13□□□□□ -0.63
USP4-210ENST00000483212 CDK12Q9NYV4 1490 aaPredicted RBP11.12□□□□□ -0.63
USP4-210ENST00000483212 PEAK1Q9H792 1746 aa11.12□□□□□ -0.63
USP4-210ENST00000483212 SPATA31A3Q5VYP0 1347 aa11.12□□□□□ -0.63
USP4-210ENST00000483212 PAK3O75914 559 aaPredicted RBP11.12□□□□□ -0.63
USP4-210ENST00000483212 NLRP6P59044 892 aa11.12□□□□□ -0.63
USP4-210ENST00000483212 ABTB2Q8N961 1025 aa11.12□□□□□ -0.63
USP4-210ENST00000483212 PHRF1Q9P1Y6 1649 aaKnown RBP11.11□□□□□ -0.63
USP4-210ENST00000483212 MAP2P11137 1827 aaKnown RBP11.1□□□□□ -0.63
USP4-210ENST00000483212 NUTM2GQ5VZR2 741 aa11.1□□□□□ -0.63
USP4-210ENST00000483212 CERKQ8TCT0 537 aa11.1□□□□□ -0.63
USP4-210ENST00000483212 EMILIN1Q9Y6C2 1016 aa11.1□□□□□ -0.63
USP4-210ENST00000483212 MAP3K19Q56UN5 1328 aa11.09□□□□□ -0.63
USP4-210ENST00000483212 COL16A1Q07092 1604 aaPredicted RBP11.09□□□□□ -0.63
USP4-210ENST00000483212 ARHGEF10O15013 1369 aa11.09□□□□□ -0.63
USP4-210ENST00000483212 RRS1Q15050 365 aaKnown RBP11.09□□□□□ -0.63
USP4-210ENST00000483212 KIF24Q5T7B8 1368 aa11.08□□□□□ -0.64
USP4-210ENST00000483212 TOM1O60784 492 aa11.08□□□□□ -0.64
USP4-210ENST00000483212 ABCA3Q99758 1704 aa11.08□□□□□ -0.64
USP4-210ENST00000483212 BLMP54132 1417 aaPredicted RBP11.08□□□□□ -0.64
USP4-210ENST00000483212 COL22A1Q8NFW1 1626 aaPredicted RBP11.07□□□□□ -0.64
USP4-210ENST00000483212 FAM9BQ8IZU0 186 aa11.07□□□□□ -0.64
USP4-210ENST00000483212 RTL1A6NKG5 1358 aa11.06□□□□□ -0.64
USP4-210ENST00000483212 GCP02774 474 aa11.06□□□□□ -0.64
USP4-210ENST00000483212 KCNH5Q8NCM2 988 aa11.06□□□□□ -0.64
USP4-210ENST00000483212 CFAP53Q96M91 514 aa11.06□□□□□ -0.64
USP4-210ENST00000483212 LTN1O94822 1766 aa11.05□□□□□ -0.64
USP4-210ENST00000483212 FLT4P35916 1363 aa11.05□□□□□ -0.64
USP4-210ENST00000483212 UBAP1LF5GYI3 381 aa11.05□□□□□ -0.64
USP4-210ENST00000483212 SOX12O15370 315 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms