RNA–Protein interactions for RNA: ENST00000483009.1

CCDC28B-205, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-205ENST00000483009 CABP1Q9NZU7 370 aa22.23■■□□□ 1.15
CCDC28B-205ENST00000483009 TRPC5Q9UL62 973 aaPredicted RBP22.23■■□□□ 1.15
CCDC28B-205ENST00000483009 ALS2Q96Q42 1657 aa22.22■■□□□ 1.15
CCDC28B-205ENST00000483009 ATAD2Q6PL18 1390 aa22.21■■□□□ 1.15
CCDC28B-205ENST00000483009 ATRNO75882 1429 aa22.21■■□□□ 1.15
CCDC28B-205ENST00000483009 BCL9LQ86UU0 1499 aa22.21■■□□□ 1.15
CCDC28B-205ENST00000483009 CDK12Q9NYV4 1490 aaPredicted RBP22.21■■□□□ 1.15
CCDC28B-205ENST00000483009 CCER1Q8TC90 406 aaPredicted RBP22.2■■□□□ 1.14
CCDC28B-205ENST00000483009 SLIT2O94813 1529 aa22.2■■□□□ 1.14
CCDC28B-205ENST00000483009 BRD4O60885 1362 aaPredicted RBP22.19■■□□□ 1.14
CCDC28B-205ENST00000483009 UNC5CLQ8IV45 518 aa22.18■■□□□ 1.14
CCDC28B-205ENST00000483009 MARF1Q9Y4F3 1742 aaKnown RBP22.17■■□□□ 1.14
CCDC28B-205ENST00000483009 USP6P35125 1406 aa22.16■■□□□ 1.14
CCDC28B-205ENST00000483009 ABCA3Q99758 1704 aa22.16■■□□□ 1.14
CCDC28B-205ENST00000483009 ST20-MTHFSA0A0A6YYL1 179 aa22.15■■□□□ 1.14
CCDC28B-205ENST00000483009 NUTM2GQ5VZR2 741 aa22.15■■□□□ 1.14
CCDC28B-205ENST00000483009 ABTB2Q8N961 1025 aa22.15■■□□□ 1.14
CCDC28B-205ENST00000483009 RGS12O14924 1447 aa22.14■■□□□ 1.14
CCDC28B-205ENST00000483009 FAM83GA6ND36 823 aa22.14■■□□□ 1.13
CCDC28B-205ENST00000483009 TESK2Q96S53 571 aa22.13■■□□□ 1.13
CCDC28B-205ENST00000483009 GJD4Q96KN9 370 aaPredicted RBP22.12■■□□□ 1.13
CCDC28B-205ENST00000483009 ZNF692Q9BU19 519 aaPredicted RBP22.12■■□□□ 1.13
CCDC28B-205ENST00000483009 USP47Q96K76 1375 aa22.12■■□□□ 1.13
CCDC28B-205ENST00000483009 USP19O94966 1318 aa22.11■■□□□ 1.13
CCDC28B-205ENST00000483009 SLC24A1O60721 1099 aa22.11■■□□□ 1.13
CCDC28B-205ENST00000483009 NLRP13Q86W25 1043 aa22.11■■□□□ 1.13
CCDC28B-205ENST00000483009 PUS7Q96PZ0 661 aaKnown RBP22.11■■□□□ 1.13
CCDC28B-205ENST00000483009 PRDM11Q9NQV5 511 aa22.11■■□□□ 1.13
CCDC28B-205ENST00000483009 SSH2Q76I76 1423 aa22.11■■□□□ 1.13
CCDC28B-205ENST00000483009 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.09■■□□□ 1.13
CCDC28B-205ENST00000483009 CPSF1Q10570 1443 aaKnown RBP22.09■■□□□ 1.13
CCDC28B-205ENST00000483009 VPS72Q15906 364 aa22.09■■□□□ 1.13
CCDC28B-205ENST00000483009 CRYBG1Q9Y4K1 1723 aa22.09■■□□□ 1.13
CCDC28B-205ENST00000483009 KIAA0232Q92628 1395 aa22.08■■□□□ 1.12
CCDC28B-205ENST00000483009 TTC21BQ7Z4L5 1316 aa22.07■■□□□ 1.12
CCDC28B-205ENST00000483009 TMC1Q8TDI8 760 aa22.07■■□□□ 1.12
CCDC28B-205ENST00000483009 BTG4Q9NY30 223 aa22.07■■□□□ 1.12
CCDC28B-205ENST00000483009 NLRP6P59044 892 aa22.06■■□□□ 1.12
CCDC28B-205ENST00000483009 ZC3H6P61129 1189 aaKnown RBP22.06■■□□□ 1.12
CCDC28B-205ENST00000483009 KTN1Q86UP2 1357 aaKnown RBP22.06■■□□□ 1.12
CCDC28B-205ENST00000483009 NWD2Q9ULI1 1742 aa22.06■■□□□ 1.12
CCDC28B-205ENST00000483009 PLCH1Q4KWH8 1693 aa22.05■■□□□ 1.12
CCDC28B-205ENST00000483009 TTC21AQ8NDW8 1320 aa22.05■■□□□ 1.12
CCDC28B-205ENST00000483009 COL14A1Q05707 1796 aaKnown RBP22.04■■□□□ 1.12
CCDC28B-205ENST00000483009 GCP02774 474 aa22.04■■□□□ 1.12
CCDC28B-205ENST00000483009 SLC12A5Q9H2X9 1139 aa22.04■■□□□ 1.12
CCDC28B-205ENST00000483009 CCDC9Q9Y3X0 531 aaKnown RBP22.04■■□□□ 1.12
CCDC28B-205ENST00000483009 PHRF1Q9P1Y6 1649 aaKnown RBP22.04■■□□□ 1.12
CCDC28B-205ENST00000483009 CPDO75976 1380 aa22.03■■□□□ 1.12
CCDC28B-205ENST00000483009 CHRNA2Q15822 529 aa22.03■■□□□ 1.12
CCDC28B-205ENST00000483009 HDGFL2Q7Z4V5 671 aaPredicted RBP22.03■■□□□ 1.12
CCDC28B-205ENST00000483009 GLI3P10071 1580 aa22.03■■□□□ 1.12
CCDC28B-205ENST00000483009 NRKQ7Z2Y5 1582 aa22.03■■□□□ 1.12
CCDC28B-205ENST00000483009 TMF1P82094 1093 aa22.02■■□□□ 1.12
CCDC28B-205ENST00000483009 CD163L1Q9NR16 1453 aa22.02■■□□□ 1.12
CCDC28B-205ENST00000483009 NINLQ9Y2I6 1382 aa22.01■■□□□ 1.11
CCDC28B-205ENST00000483009 TERF2IPQ9NYB0 399 aa22.01■■□□□ 1.11
CCDC28B-205ENST00000483009 UPF1Q92900 1129 aaKnown RBP eCLIP22■■□□□ 1.11
CCDC28B-205ENST00000483009 AKAP12Q02952 1782 aa21.99■■□□□ 1.11
CCDC28B-205ENST00000483009 NRAPQ86VF7 1730 aa21.99■■□□□ 1.11
CCDC28B-205ENST00000483009 SLIT3O75094 1523 aa21.99■■□□□ 1.11
CCDC28B-205ENST00000483009 PIK3C2AO00443 1686 aa21.98■■□□□ 1.11
CCDC28B-205ENST00000483009 A0A1W2PP64 1363 aa21.98■■□□□ 1.11
CCDC28B-205ENST00000483009 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.97■■□□□ 1.11
CCDC28B-205ENST00000483009 SPATA31A5Q5VU36 1347 aa21.97■■□□□ 1.11
CCDC28B-205ENST00000483009 SPATA31A7Q8IWB4 1347 aa21.97■■□□□ 1.11
CCDC28B-205ENST00000483009 EDC4Q6P2E9 1401 aaKnown RBP21.97■■□□□ 1.11
CCDC28B-205ENST00000483009 ONECUT3O60422 494 aaPredicted RBP21.96■■□□□ 1.11
CCDC28B-205ENST00000483009 CDCA8Q53HL2 280 aa21.96■■□□□ 1.11
CCDC28B-205ENST00000483009 SEPT12Q8IYM1 358 aa21.96■■□□□ 1.11
CCDC28B-205ENST00000483009 MON2Q7Z3U7 1717 aa21.95■■□□□ 1.1
CCDC28B-205ENST00000483009 KCNH5Q8NCM2 988 aa21.95■■□□□ 1.1
CCDC28B-205ENST00000483009 STRN4Q9NRL3 753 aa21.95■■□□□ 1.1
CCDC28B-205ENST00000483009 USP31Q70CQ4 1352 aa21.95■■□□□ 1.1
CCDC28B-205ENST00000483009 NME9Q86XW9 330 aa21.94■■□□□ 1.1
CCDC28B-205ENST00000483009 ZBTB7CA1YPR0 619 aa21.93■■□□□ 1.1
CCDC28B-205ENST00000483009 EVA1CP58658 441 aa21.93■■□□□ 1.1
CCDC28B-205ENST00000483009 AATKQ6ZMQ8 1374 aa21.93■■□□□ 1.1
CCDC28B-205ENST00000483009 CAMTA1Q9Y6Y1 1673 aa21.92■■□□□ 1.1
CCDC28B-205ENST00000483009 FAM98CQ17RN3 349 aaKnown RBP21.92■■□□□ 1.1
CCDC28B-205ENST00000483009 ZRANB1Q9UGI0 708 aa21.92■■□□□ 1.1
CCDC28B-205ENST00000483009 ANKRD36BQ8N2N9 1353 aa21.91■■□□□ 1.1
CCDC28B-205ENST00000483009 SPATA31A1Q5TZJ5 1347 aa21.91■■□□□ 1.1
CCDC28B-205ENST00000483009 A0A0G2JS52 829 aa21.91■■□□□ 1.1
CCDC28B-205ENST00000483009 MYT1Q01538 1121 aa21.91■■□□□ 1.1
CCDC28B-205ENST00000483009 LMO7Q8WWI1 1683 aa21.91■■□□□ 1.1
CCDC28B-205ENST00000483009 SOX12O15370 315 aa21.9■■□□□ 1.1
CCDC28B-205ENST00000483009 EIF4G2P78344 907 aaKnown RBP eCLIP21.9■■□□□ 1.1
CCDC28B-205ENST00000483009 ARHGEF25Q86VW2 580 aa21.9■■□□□ 1.1
CCDC28B-205ENST00000483009 LARP1Q6PKG0 1096 aaKnown RBP21.88■■□□□ 1.09
CCDC28B-205ENST00000483009 COL5A2P05997 1499 aaPredicted RBP21.88■■□□□ 1.09
CCDC28B-205ENST00000483009 NFAT5O94916 1531 aa21.87■■□□□ 1.09
CCDC28B-205ENST00000483009 HSPA5P11021 654 aaKnown RBP21.86■■□□□ 1.09
CCDC28B-205ENST00000483009 KRT27Q7Z3Y8 459 aa21.86■■□□□ 1.09
CCDC28B-205ENST00000483009 OVOS2A0A0J9YW53 1432 aa21.86■■□□□ 1.09
CCDC28B-205ENST00000483009 OVOS2Q6IE36 1432 aa21.86■■□□□ 1.09
CCDC28B-205ENST00000483009 USP35Q9P2H5 1018 aa21.85■■□□□ 1.09
CCDC28B-205ENST00000483009 BARGINQ6ZT62 677 aa21.84■■□□□ 1.09
CCDC28B-205ENST00000483009 TCP11L2Q8N4U5 519 aa21.84■■□□□ 1.09
CCDC28B-205ENST00000483009 AXIN2Q9Y2T1 843 aa21.84■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 104.1 ms