RNA–Protein interactions for RNA: ENST00000482519.1

VAMP4-204, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 3

Gene VAMP4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-204ENST00000482519 NUTM2GQ5VZR2 741 aa23.48■■□□□ 1.35
VAMP4-204ENST00000482519 CABP1Q9NZU7 370 aa23.48■■□□□ 1.35
VAMP4-204ENST00000482519 ABCA3Q99758 1704 aa23.47■■□□□ 1.35
VAMP4-204ENST00000482519 BCL9LQ86UU0 1499 aa23.45■■□□□ 1.34
VAMP4-204ENST00000482519 CCER1Q8TC90 406 aaPredicted RBP23.45■■□□□ 1.34
VAMP4-204ENST00000482519 UNC5CLQ8IV45 518 aa23.43■■□□□ 1.34
VAMP4-204ENST00000482519 ABTB2Q8N961 1025 aa23.43■■□□□ 1.34
VAMP4-204ENST00000482519 ATRNO75882 1429 aa23.42■■□□□ 1.34
VAMP4-204ENST00000482519 FAM83GA6ND36 823 aa23.42■■□□□ 1.34
VAMP4-204ENST00000482519 CLSPNQ9HAW4 1339 aa23.41■■□□□ 1.34
VAMP4-204ENST00000482519 SLIT2O94813 1529 aa23.41■■□□□ 1.34
VAMP4-204ENST00000482519 CDK12Q9NYV4 1490 aaPredicted RBP23.41■■□□□ 1.34
VAMP4-204ENST00000482519 RGS12O14924 1447 aa23.4■■□□□ 1.34
VAMP4-204ENST00000482519 PLCH1Q4KWH8 1693 aa23.38■■□□□ 1.33
VAMP4-204ENST00000482519 GJD4Q96KN9 370 aaPredicted RBP23.38■■□□□ 1.33
VAMP4-204ENST00000482519 CCDC9Q9Y3X0 531 aaKnown RBP23.38■■□□□ 1.33
VAMP4-204ENST00000482519 ST20-MTHFSA0A0A6YYL1 179 aa23.37■■□□□ 1.33
VAMP4-204ENST00000482519 ATAD2Q6PL18 1390 aa23.37■■□□□ 1.33
VAMP4-204ENST00000482519 SBNO2Q9Y2G9 1366 aa23.37■■□□□ 1.33
VAMP4-204ENST00000482519 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.36■■□□□ 1.33
VAMP4-204ENST00000482519 PRDM11Q9NQV5 511 aa23.36■■□□□ 1.33
VAMP4-204ENST00000482519 BTG4Q9NY30 223 aa23.36■■□□□ 1.33
VAMP4-204ENST00000482519 TIMELESSQ9UNS1 1208 aa23.36■■□□□ 1.33
VAMP4-204ENST00000482519 CRYBG1Q9Y4K1 1723 aa23.36■■□□□ 1.33
VAMP4-204ENST00000482519 USP6P35125 1406 aa23.35■■□□□ 1.33
VAMP4-204ENST00000482519 ZC3H6P61129 1189 aaKnown RBP23.35■■□□□ 1.33
VAMP4-204ENST00000482519 TMC1Q8TDI8 760 aa23.35■■□□□ 1.33
VAMP4-204ENST00000482519 NWD2Q9ULI1 1742 aa23.34■■□□□ 1.33
VAMP4-204ENST00000482519 NLRP13Q86W25 1043 aa23.34■■□□□ 1.33
VAMP4-204ENST00000482519 COL14A1Q05707 1796 aaKnown RBP23.33■■□□□ 1.33
VAMP4-204ENST00000482519 PHRF1Q9P1Y6 1649 aaKnown RBP23.33■■□□□ 1.32
VAMP4-204ENST00000482519 BRD4O60885 1362 aaPredicted RBP23.32■■□□□ 1.32
VAMP4-204ENST00000482519 KIAA0232Q92628 1395 aa23.32■■□□□ 1.32
VAMP4-204ENST00000482519 CHRNA2Q15822 529 aa23.32■■□□□ 1.32
VAMP4-204ENST00000482519 VPS72Q15906 364 aa23.32■■□□□ 1.32
VAMP4-204ENST00000482519 ZNF692Q9BU19 519 aaPredicted RBP23.32■■□□□ 1.32
VAMP4-204ENST00000482519 NLRP6P59044 892 aa23.31■■□□□ 1.32
VAMP4-204ENST00000482519 KTN1Q86UP2 1357 aaKnown RBP23.29■■□□□ 1.32
VAMP4-204ENST00000482519 USP47Q96K76 1375 aa23.29■■□□□ 1.32
VAMP4-204ENST00000482519 TESK2Q96S53 571 aa23.29■■□□□ 1.32
VAMP4-204ENST00000482519 AKAP12Q02952 1782 aa23.29■■□□□ 1.32
VAMP4-204ENST00000482519 GLI3P10071 1580 aa23.28■■□□□ 1.32
VAMP4-204ENST00000482519 ZBTB7CA1YPR0 619 aa23.28■■□□□ 1.32
VAMP4-204ENST00000482519 UPF1Q92900 1129 aaKnown RBP eCLIP23.28■■□□□ 1.32
VAMP4-204ENST00000482519 SLC12A5Q9H2X9 1139 aa23.28■■□□□ 1.32
VAMP4-204ENST00000482519 TTC21BQ7Z4L5 1316 aa23.28■■□□□ 1.32
VAMP4-204ENST00000482519 GCP02774 474 aa23.27■■□□□ 1.32
VAMP4-204ENST00000482519 USP19O94966 1318 aa23.27■■□□□ 1.32
VAMP4-204ENST00000482519 SSH2Q76I76 1423 aa23.26■■□□□ 1.31
VAMP4-204ENST00000482519 NRAPQ86VF7 1730 aa23.26■■□□□ 1.31
VAMP4-204ENST00000482519 STRN4Q9NRL3 753 aa23.26■■□□□ 1.31
VAMP4-204ENST00000482519 NRKQ7Z2Y5 1582 aa23.26■■□□□ 1.31
VAMP4-204ENST00000482519 CPSF1Q10570 1443 aaKnown RBP23.25■■□□□ 1.31
VAMP4-204ENST00000482519 A0A0G2JS52 829 aa23.25■■□□□ 1.31
VAMP4-204ENST00000482519 SLC24A1O60721 1099 aa23.25■■□□□ 1.31
VAMP4-204ENST00000482519 MYT1Q01538 1121 aa23.25■■□□□ 1.31
VAMP4-204ENST00000482519 HDGFL2Q7Z4V5 671 aaPredicted RBP23.25■■□□□ 1.31
VAMP4-204ENST00000482519 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.25■■□□□ 1.31
VAMP4-204ENST00000482519 PIK3C2AO00443 1686 aa23.24■■□□□ 1.31
VAMP4-204ENST00000482519 SOX12O15370 315 aa23.23■■□□□ 1.31
VAMP4-204ENST00000482519 EVA1CP58658 441 aa23.23■■□□□ 1.31
VAMP4-204ENST00000482519 SEPT12Q8IYM1 358 aa23.23■■□□□ 1.31
VAMP4-204ENST00000482519 TMF1P82094 1093 aa23.22■■□□□ 1.31
VAMP4-204ENST00000482519 PUS7Q96PZ0 661 aaKnown RBP23.22■■□□□ 1.31
VAMP4-204ENST00000482519 TERF2IPQ9NYB0 399 aa23.22■■□□□ 1.31
VAMP4-204ENST00000482519 TTC21AQ8NDW8 1320 aa23.22■■□□□ 1.31
VAMP4-204ENST00000482519 FAM98CQ17RN3 349 aaKnown RBP23.21■■□□□ 1.31
VAMP4-204ENST00000482519 MON2Q7Z3U7 1717 aa23.21■■□□□ 1.31
VAMP4-204ENST00000482519 CD163L1Q9NR16 1453 aa23.2■■□□□ 1.3
VAMP4-204ENST00000482519 CPDO75976 1380 aa23.2■■□□□ 1.3
VAMP4-204ENST00000482519 SPATA31A5Q5VU36 1347 aa23.19■■□□□ 1.3
VAMP4-204ENST00000482519 SPATA31A7Q8IWB4 1347 aa23.19■■□□□ 1.3
VAMP4-204ENST00000482519 USP35Q9P2H5 1018 aa23.18■■□□□ 1.3
VAMP4-204ENST00000482519 ZRANB1Q9UGI0 708 aa23.18■■□□□ 1.3
VAMP4-204ENST00000482519 BRWD3Q6RI45 1802 aa23.17■■□□□ 1.3
VAMP4-204ENST00000482519 A0A1W2PP64 1363 aa23.17■■□□□ 1.3
VAMP4-204ENST00000482519 NME9Q86XW9 330 aa23.17■■□□□ 1.3
VAMP4-204ENST00000482519 SLIT3O75094 1523 aa23.17■■□□□ 1.3
VAMP4-204ENST00000482519 CAMTA1Q9Y6Y1 1673 aa23.16■■□□□ 1.3
VAMP4-204ENST00000482519 ONECUT3O60422 494 aaPredicted RBP23.16■■□□□ 1.3
VAMP4-204ENST00000482519 KCNH5Q8NCM2 988 aa23.16■■□□□ 1.3
VAMP4-204ENST00000482519 LARP1Q6PKG0 1096 aaKnown RBP23.14■■□□□ 1.29
VAMP4-204ENST00000482519 NINLQ9Y2I6 1382 aa23.14■■□□□ 1.29
VAMP4-204ENST00000482519 SPATA31A1Q5TZJ5 1347 aa23.13■■□□□ 1.29
VAMP4-204ENST00000482519 CDCA8Q53HL2 280 aa23.13■■□□□ 1.29
VAMP4-204ENST00000482519 KRT27Q7Z3Y8 459 aa23.13■■□□□ 1.29
VAMP4-204ENST00000482519 EDC4Q6P2E9 1401 aaKnown RBP23.13■■□□□ 1.29
VAMP4-204ENST00000482519 LMO7Q8WWI1 1683 aa23.13■■□□□ 1.29
VAMP4-204ENST00000482519 AATKQ6ZMQ8 1374 aa23.11■■□□□ 1.29
VAMP4-204ENST00000482519 EP400Q96L91 3159 aa23.09■■□□□ 1.29
VAMP4-204ENST00000482519 ARHGEF25Q86VW2 580 aa23.09■■□□□ 1.29
VAMP4-204ENST00000482519 USP31Q70CQ4 1352 aa23.09■■□□□ 1.29
VAMP4-204ENST00000482519 COL5A2P05997 1499 aaPredicted RBP23.09■■□□□ 1.29
VAMP4-204ENST00000482519 POLR3GLQ9BT43 218 aa23.08■■□□□ 1.29
VAMP4-204ENST00000482519 AXIN2Q9Y2T1 843 aa23.08■■□□□ 1.29
VAMP4-204ENST00000482519 EIF4G2P78344 907 aaKnown RBP eCLIP23.07■■□□□ 1.28
VAMP4-204ENST00000482519 ANKRD36BQ8N2N9 1353 aa23.06■■□□□ 1.28
VAMP4-204ENST00000482519 FAM182BQ5T319 152 aa23.06■■□□□ 1.28
VAMP4-204ENST00000482519 TOM1L2Q6ZVM7 507 aa23.06■■□□□ 1.28
VAMP4-204ENST00000482519 TCP11L2Q8N4U5 519 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 186.6 ms