RNA–Protein interactions for RNA: ENST00000482280.1

MSH5-215, Transcript of mutS homolog 5, humanhuman

TSL 2

Gene MSH5, Length 944 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-215ENST00000482280 SLIT2O94813 1529 aa28.33■■■□□ 2.13
MSH5-215ENST00000482280 NBPF8Q3BBV2 869 aa28.32■■■□□ 2.12
MSH5-215ENST00000482280 POLR3AO14802 1390 aaPredicted RBP28.31■■■□□ 2.12
MSH5-215ENST00000482280 PPIP5K1Q6PFW1 1433 aa28.31■■■□□ 2.12
MSH5-215ENST00000482280 ATAD2Q6PL18 1390 aa28.29■■■□□ 2.12
MSH5-215ENST00000482280 ALS2Q96Q42 1657 aa28.29■■■□□ 2.12
MSH5-215ENST00000482280 CARD11Q9BXL7 1154 aa28.28■■■□□ 2.12
MSH5-215ENST00000482280 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.28■■■□□ 2.12
MSH5-215ENST00000482280 ABCA3Q99758 1704 aa28.27■■■□□ 2.12
MSH5-215ENST00000482280 TOPAZ1Q8N9V7 1692 aa28.27■■■□□ 2.12
MSH5-215ENST00000482280 FAM83GA6ND36 823 aa28.27■■■□□ 2.12
MSH5-215ENST00000482280 VPS72Q15906 364 aa28.26■■■□□ 2.11
MSH5-215ENST00000482280 ABTB2Q8N961 1025 aa28.26■■■□□ 2.11
MSH5-215ENST00000482280 PRDM11Q9NQV5 511 aa28.26■■■□□ 2.11
MSH5-215ENST00000482280 NUTM2GQ5VZR2 741 aa28.25■■■□□ 2.11
MSH5-215ENST00000482280 RALGAPBQ86X10 1494 aa28.24■■■□□ 2.11
MSH5-215ENST00000482280 BTG4Q9NY30 223 aa28.24■■■□□ 2.11
MSH5-215ENST00000482280 CABP1Q9NZU7 370 aa28.23■■■□□ 2.11
MSH5-215ENST00000482280 NWD2Q9ULI1 1742 aa28.23■■■□□ 2.11
MSH5-215ENST00000482280 PLCH1Q4KWH8 1693 aa28.23■■■□□ 2.11
MSH5-215ENST00000482280 A0A0G2JS52 829 aa28.22■■■□□ 2.11
MSH5-215ENST00000482280 MYT1Q01538 1121 aa28.22■■■□□ 2.11
MSH5-215ENST00000482280 BRD4O60885 1362 aaPredicted RBP28.21■■■□□ 2.11
MSH5-215ENST00000482280 NLRP13Q86W25 1043 aa28.2■■■□□ 2.1
MSH5-215ENST00000482280 COL14A1Q05707 1796 aaKnown RBP28.19■■■□□ 2.1
MSH5-215ENST00000482280 ZC3H6P61129 1189 aaKnown RBP28.16■■■□□ 2.1
MSH5-215ENST00000482280 KIAA0232Q92628 1395 aa28.15■■■□□ 2.1
MSH5-215ENST00000482280 SEPT12Q8IYM1 358 aa28.15■■■□□ 2.1
MSH5-215ENST00000482280 GLI3P10071 1580 aa28.15■■■□□ 2.1
MSH5-215ENST00000482280 ZNF692Q9BU19 519 aaPredicted RBP28.14■■■□□ 2.1
MSH5-215ENST00000482280 USP6P35125 1406 aa28.13■■■□□ 2.09
MSH5-215ENST00000482280 CHRNA2Q15822 529 aa28.12■■■□□ 2.09
MSH5-215ENST00000482280 SBNO2Q9Y2G9 1366 aa28.11■■■□□ 2.09
MSH5-215ENST00000482280 EVA1CP58658 441 aa28.11■■■□□ 2.09
MSH5-215ENST00000482280 NLRP6P59044 892 aa28.11■■■□□ 2.09
MSH5-215ENST00000482280 CCDC125Q86Z20 511 aa28.11■■■□□ 2.09
MSH5-215ENST00000482280 PHRF1Q9P1Y6 1649 aaKnown RBP28.1■■■□□ 2.09
MSH5-215ENST00000482280 CRYBG1Q9Y4K1 1723 aa28.1■■■□□ 2.09
MSH5-215ENST00000482280 PCGF6Q9BYE7 350 aa28.1■■■□□ 2.09
MSH5-215ENST00000482280 STRN4Q9NRL3 753 aa28.1■■■□□ 2.09
MSH5-215ENST00000482280 FAM98CQ17RN3 349 aaKnown RBP28.09■■■□□ 2.09
MSH5-215ENST00000482280 USP19O94966 1318 aa28.08■■■□□ 2.09
MSH5-215ENST00000482280 ONECUT3O60422 494 aaPredicted RBP28.07■■■□□ 2.08
MSH5-215ENST00000482280 SLC24A1O60721 1099 aa28.07■■■□□ 2.08
MSH5-215ENST00000482280 GCP02774 474 aa28.07■■■□□ 2.08
MSH5-215ENST00000482280 NRAPQ86VF7 1730 aa28.06■■■□□ 2.08
MSH5-215ENST00000482280 ZBTB7CA1YPR0 619 aa28.06■■■□□ 2.08
MSH5-215ENST00000482280 SF3B2Q13435 895 aaKnown RBP28.06■■■□□ 2.08
MSH5-215ENST00000482280 KRT27Q7Z3Y8 459 aa28.06■■■□□ 2.08
MSH5-215ENST00000482280 SPATA31A5Q5VU36 1347 aa28.05■■■□□ 2.08
MSH5-215ENST00000482280 SPATA31A7Q8IWB4 1347 aa28.05■■■□□ 2.08
MSH5-215ENST00000482280 TMC1Q8TDI8 760 aa28.05■■■□□ 2.08
MSH5-215ENST00000482280 CPDO75976 1380 aa28.04■■■□□ 2.08
MSH5-215ENST00000482280 KTN1Q86UP2 1357 aaKnown RBP28.03■■■□□ 2.08
MSH5-215ENST00000482280 NRKQ7Z2Y5 1582 aa28.03■■■□□ 2.08
MSH5-215ENST00000482280 TTC21AQ8NDW8 1320 aa28.02■■■□□ 2.08
MSH5-215ENST00000482280 HDGFL2Q7Z4V5 671 aaPredicted RBP28.02■■■□□ 2.08
MSH5-215ENST00000482280 TTC21BQ7Z4L5 1316 aa28.01■■■□□ 2.07
MSH5-215ENST00000482280 CLSPNQ9HAW4 1339 aa28■■■□□ 2.07
MSH5-215ENST00000482280 USP35Q9P2H5 1018 aa28■■■□□ 2.07
MSH5-215ENST00000482280 KCNH5Q8NCM2 988 aa27.99■■■□□ 2.07
MSH5-215ENST00000482280 SPATA31A1Q5TZJ5 1347 aa27.98■■■□□ 2.07
MSH5-215ENST00000482280 TERF2IPQ9NYB0 399 aa27.98■■■□□ 2.07
MSH5-215ENST00000482280 TIMELESSQ9UNS1 1208 aa27.98■■■□□ 2.07
MSH5-215ENST00000482280 ST20-MTHFSA0A0A6YYL1 179 aa27.97■■■□□ 2.07
MSH5-215ENST00000482280 BLMP54132 1417 aaPredicted RBP27.97■■■□□ 2.07
MSH5-215ENST00000482280 SSH2Q76I76 1423 aa27.97■■■□□ 2.07
MSH5-215ENST00000482280 CPSF1Q10570 1443 aaKnown RBP27.96■■■□□ 2.07
MSH5-215ENST00000482280 PUS7Q96PZ0 661 aaKnown RBP27.96■■■□□ 2.07
MSH5-215ENST00000482280 SOX12O15370 315 aa27.94■■■□□ 2.06
MSH5-215ENST00000482280 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.94■■■□□ 2.06
MSH5-215ENST00000482280 BRWD3Q6RI45 1802 aa27.94■■■□□ 2.06
MSH5-215ENST00000482280 AKAP12Q02952 1782 aa27.93■■■□□ 2.06
MSH5-215ENST00000482280 PIK3C2AO00443 1686 aa27.92■■■□□ 2.06
MSH5-215ENST00000482280 LARP1Q6PKG0 1096 aaKnown RBP27.92■■■□□ 2.06
MSH5-215ENST00000482280 SLIT3O75094 1523 aa27.92■■■□□ 2.06
MSH5-215ENST00000482280 CAMTA1Q9Y6Y1 1673 aa27.91■■■□□ 2.06
MSH5-215ENST00000482280 AATKQ6ZMQ8 1374 aa27.91■■■□□ 2.06
MSH5-215ENST00000482280 TCP11L2Q8N4U5 519 aa27.91■■■□□ 2.06
MSH5-215ENST00000482280 SLC12A5Q9H2X9 1139 aa27.91■■■□□ 2.06
MSH5-215ENST00000482280 USP47Q96K76 1375 aa27.89■■■□□ 2.06
MSH5-215ENST00000482280 NINLQ9Y2I6 1382 aa27.89■■■□□ 2.06
MSH5-215ENST00000482280 TMF1P82094 1093 aa27.89■■■□□ 2.06
MSH5-215ENST00000482280 BARGINQ6ZT62 677 aa27.89■■■□□ 2.06
MSH5-215ENST00000482280 CCER1Q8TC90 406 aaPredicted RBP27.89■■■□□ 2.06
MSH5-215ENST00000482280 ZRANB1Q9UGI0 708 aa27.89■■■□□ 2.06
MSH5-215ENST00000482280 THRAP3Q9Y2W1 955 aaKnown RBP27.89■■■□□ 2.06
MSH5-215ENST00000482280 PDE3BQ13370 1112 aa27.88■■■□□ 2.05
MSH5-215ENST00000482280 TESK2Q96S53 571 aa27.88■■■□□ 2.05
MSH5-215ENST00000482280 COL5A2P05997 1499 aaPredicted RBP27.87■■■□□ 2.05
MSH5-215ENST00000482280 LMO7Q8WWI1 1683 aa27.87■■■□□ 2.05
MSH5-215ENST00000482280 TOM1L2Q6ZVM7 507 aa27.86■■■□□ 2.05
MSH5-215ENST00000482280 EDC4Q6P2E9 1401 aaKnown RBP27.85■■■□□ 2.05
MSH5-215ENST00000482280 MON2Q7Z3U7 1717 aa27.85■■■□□ 2.05
MSH5-215ENST00000482280 CSB-PGBD3P0DP91 1061 aa27.85■■■□□ 2.05
MSH5-215ENST00000482280 BAG6P46379 1132 aa27.85■■■□□ 2.05
MSH5-215ENST00000482280 CDCA8Q53HL2 280 aa27.85■■■□□ 2.05
MSH5-215ENST00000482280 THSD7AQ9UPZ6 1657 aa27.84■■■□□ 2.05
MSH5-215ENST00000482280 CRB1P82279 1406 aa27.84■■■□□ 2.05
MSH5-215ENST00000482280 ARHGEF25Q86VW2 580 aa27.83■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms