RNA–Protein interactions for RNA: ENST00000482065.1

LIMS3-204, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 690 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-204ENST00000482065 SRPK2P78362 688 aaKnown RBP21.37■■□□□ 1.01
LIMS3-204ENST00000482065 NBPF8Q3BBV2 869 aa21.37■■□□□ 1.01
LIMS3-204ENST00000482065 CABP2Q9NPB3 220 aa21.37■■□□□ 1.01
LIMS3-204ENST00000482065 POLR3AO14802 1390 aaPredicted RBP21.36■■□□□ 1.01
LIMS3-204ENST00000482065 CRYBG1Q9Y4K1 1723 aa21.36■■□□□ 1.01
LIMS3-204ENST00000482065 RALGAPBQ86X10 1494 aa21.36■■□□□ 1.01
LIMS3-204ENST00000482065 GLI3P10071 1580 aa21.36■■□□□ 1.01
LIMS3-204ENST00000482065 PLEKHG3A1L390 1219 aa21.35■■□□□ 1.01
LIMS3-204ENST00000482065 FAM83GA6ND36 823 aa21.35■■□□□ 1.01
LIMS3-204ENST00000482065 NWD2Q9ULI1 1742 aa21.35■■□□□ 1.01
LIMS3-204ENST00000482065 PPIP5K1Q6PFW1 1433 aa21.33■■□□□ 1.01
LIMS3-204ENST00000482065 NUTM2GQ5VZR2 741 aa21.32■■□□□ 1
LIMS3-204ENST00000482065 ATAD2Q6PL18 1390 aa21.31■■□□□ 1
LIMS3-204ENST00000482065 NRAPQ86VF7 1730 aa21.3■■□□□ 1
LIMS3-204ENST00000482065 VPS72Q15906 364 aa21.3■■□□□ 1
LIMS3-204ENST00000482065 TONSLQ96HA7 1378 aa21.3■■□□□ 1
LIMS3-204ENST00000482065 COL14A1Q05707 1796 aaKnown RBP21.3■■□□□ 1
LIMS3-204ENST00000482065 PHRF1Q9P1Y6 1649 aaKnown RBP21.29■■□□□ 1
LIMS3-204ENST00000482065 BTG4Q9NY30 223 aa21.29■■□□□ 1
LIMS3-204ENST00000482065 CCDC9Q9Y3X0 531 aaKnown RBP21.29■■□□□ 1
LIMS3-204ENST00000482065 EVC2Q86UK5 1308 aa21.28■■□□□ 1
LIMS3-204ENST00000482065 CABP1Q9NZU7 370 aa21.27■■□□□ 1
LIMS3-204ENST00000482065 EP400Q96L91 3159 aa21.26■□□□□ 0.99
LIMS3-204ENST00000482065 PRDM11Q9NQV5 511 aa21.26■□□□□ 0.99
LIMS3-204ENST00000482065 KIAA0232Q92628 1395 aa21.25■□□□□ 0.99
LIMS3-204ENST00000482065 ABTB2Q8N961 1025 aa21.25■□□□□ 0.99
LIMS3-204ENST00000482065 BRWD3Q6RI45 1802 aa21.25■□□□□ 0.99
LIMS3-204ENST00000482065 CARD11Q9BXL7 1154 aa21.24■□□□□ 0.99
LIMS3-204ENST00000482065 ZC3H6P61129 1189 aaKnown RBP21.23■□□□□ 0.99
LIMS3-204ENST00000482065 CHRNA2Q15822 529 aa21.23■□□□□ 0.99
LIMS3-204ENST00000482065 SEPT12Q8IYM1 358 aa21.23■□□□□ 0.99
LIMS3-204ENST00000482065 NRKQ7Z2Y5 1582 aa21.23■□□□□ 0.99
LIMS3-204ENST00000482065 USP6P35125 1406 aa21.22■□□□□ 0.99
LIMS3-204ENST00000482065 USP19O94966 1318 aa21.2■□□□□ 0.98
LIMS3-204ENST00000482065 ONECUT3O60422 494 aaPredicted RBP21.19■□□□□ 0.98
LIMS3-204ENST00000482065 FAM98CQ17RN3 349 aaKnown RBP21.19■□□□□ 0.98
LIMS3-204ENST00000482065 A0A0G2JS52 829 aa21.18■□□□□ 0.98
LIMS3-204ENST00000482065 MYT1Q01538 1121 aa21.18■□□□□ 0.98
LIMS3-204ENST00000482065 NLRP13Q86W25 1043 aa21.18■□□□□ 0.98
LIMS3-204ENST00000482065 BRD4O60885 1362 aaPredicted RBP21.18■□□□□ 0.98
LIMS3-204ENST00000482065 SPATA31A5Q5VU36 1347 aa21.17■□□□□ 0.98
LIMS3-204ENST00000482065 SPATA31A7Q8IWB4 1347 aa21.17■□□□□ 0.98
LIMS3-204ENST00000482065 SBNO2Q9Y2G9 1366 aa21.17■□□□□ 0.98
LIMS3-204ENST00000482065 SSH2Q76I76 1423 aa21.17■□□□□ 0.98
LIMS3-204ENST00000482065 STRN4Q9NRL3 753 aa21.16■□□□□ 0.98
LIMS3-204ENST00000482065 AKAP12Q02952 1782 aa21.15■□□□□ 0.98
LIMS3-204ENST00000482065 GCP02774 474 aa21.15■□□□□ 0.98
LIMS3-204ENST00000482065 PIK3C2AO00443 1686 aa21.15■□□□□ 0.98
LIMS3-204ENST00000482065 CPDO75976 1380 aa21.14■□□□□ 0.98
LIMS3-204ENST00000482065 NLRP6P59044 892 aa21.14■□□□□ 0.97
LIMS3-204ENST00000482065 KRT27Q7Z3Y8 459 aa21.14■□□□□ 0.97
LIMS3-204ENST00000482065 CAMTA1Q9Y6Y1 1673 aa21.13■□□□□ 0.97
LIMS3-204ENST00000482065 LMO7Q8WWI1 1683 aa21.12■□□□□ 0.97
LIMS3-204ENST00000482065 SLIT3O75094 1523 aa21.12■□□□□ 0.97
LIMS3-204ENST00000482065 SPATA31A1Q5TZJ5 1347 aa21.11■□□□□ 0.97
LIMS3-204ENST00000482065 TTC21BQ7Z4L5 1316 aa21.11■□□□□ 0.97
LIMS3-204ENST00000482065 CCDC125Q86Z20 511 aa21.11■□□□□ 0.97
LIMS3-204ENST00000482065 ZNF692Q9BU19 519 aaPredicted RBP21.11■□□□□ 0.97
LIMS3-204ENST00000482065 THSD7AQ9UPZ6 1657 aa21.11■□□□□ 0.97
LIMS3-204ENST00000482065 CPSF1Q10570 1443 aaKnown RBP21.11■□□□□ 0.97
LIMS3-204ENST00000482065 ZBTB7CA1YPR0 619 aa21.1■□□□□ 0.97
LIMS3-204ENST00000482065 EVA1CP58658 441 aa21.1■□□□□ 0.97
LIMS3-204ENST00000482065 BLMP54132 1417 aaPredicted RBP21.1■□□□□ 0.97
LIMS3-204ENST00000482065 USP35Q9P2H5 1018 aa21.09■□□□□ 0.97
LIMS3-204ENST00000482065 KTN1Q86UP2 1357 aaKnown RBP21.09■□□□□ 0.97
LIMS3-204ENST00000482065 LARP1Q6PKG0 1096 aaKnown RBP21.08■□□□□ 0.97
LIMS3-204ENST00000482065 MON2Q7Z3U7 1717 aa21.08■□□□□ 0.97
LIMS3-204ENST00000482065 TMC1Q8TDI8 760 aa21.07■□□□□ 0.96
LIMS3-204ENST00000482065 CD163L1Q9NR16 1453 aa21.07■□□□□ 0.96
LIMS3-204ENST00000482065 TTC21AQ8NDW8 1320 aa21.06■□□□□ 0.96
LIMS3-204ENST00000482065 ST20-MTHFSA0A0A6YYL1 179 aa21.06■□□□□ 0.96
LIMS3-204ENST00000482065 FAM182BQ5T319 152 aa21.06■□□□□ 0.96
LIMS3-204ENST00000482065 PCGF6Q9BYE7 350 aa21.06■□□□□ 0.96
LIMS3-204ENST00000482065 COL5A2P05997 1499 aaPredicted RBP21.06■□□□□ 0.96
LIMS3-204ENST00000482065 DEFB132Q7Z7B7 95 aa21.05■□□□□ 0.96
LIMS3-204ENST00000482065 TESK2Q96S53 571 aa21.05■□□□□ 0.96
LIMS3-204ENST00000482065 SLC12A5Q9H2X9 1139 aa21.05■□□□□ 0.96
LIMS3-204ENST00000482065 SOX12O15370 315 aa21.04■□□□□ 0.96
LIMS3-204ENST00000482065 AATKQ6ZMQ8 1374 aa21.03■□□□□ 0.96
LIMS3-204ENST00000482065 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.03■□□□□ 0.96
LIMS3-204ENST00000482065 ZRANB1Q9UGI0 708 aa21.03■□□□□ 0.96
LIMS3-204ENST00000482065 SF3B2Q13435 895 aaKnown RBP21.02■□□□□ 0.96
LIMS3-204ENST00000482065 COL18A1P39060 1754 aa21.02■□□□□ 0.96
LIMS3-204ENST00000482065 BARGINQ6ZT62 677 aa21.01■□□□□ 0.95
LIMS3-204ENST00000482065 TCP11L2Q8N4U5 519 aa21.01■□□□□ 0.95
LIMS3-204ENST00000482065 HDGFL2Q7Z4V5 671 aaPredicted RBP21■□□□□ 0.95
LIMS3-204ENST00000482065 KCNH5Q8NCM2 988 aa21■□□□□ 0.95
LIMS3-204ENST00000482065 NFAT5O94916 1531 aa20.99■□□□□ 0.95
LIMS3-204ENST00000482065 A0A1W2PP64 1363 aa20.99■□□□□ 0.95
LIMS3-204ENST00000482065 USP47Q96K76 1375 aa20.99■□□□□ 0.95
LIMS3-204ENST00000482065 ARHGEF25Q86VW2 580 aa20.99■□□□□ 0.95
LIMS3-204ENST00000482065 NME9Q86XW9 330 aa20.99■□□□□ 0.95
LIMS3-204ENST00000482065 PUS7Q96PZ0 661 aaKnown RBP20.99■□□□□ 0.95
LIMS3-204ENST00000482065 AXIN2Q9Y2T1 843 aa20.99■□□□□ 0.95
LIMS3-204ENST00000482065 CRB1P82279 1406 aa20.98■□□□□ 0.95
LIMS3-204ENST00000482065 USP31Q70CQ4 1352 aa20.97■□□□□ 0.95
LIMS3-204ENST00000482065 RGPD5Q99666 1765 aa20.97■□□□□ 0.95
LIMS3-204ENST00000482065 EDC4Q6P2E9 1401 aaKnown RBP20.96■□□□□ 0.95
LIMS3-204ENST00000482065 USP54Q70EL1 1684 aa20.96■□□□□ 0.95
LIMS3-204ENST00000482065 TERF2IPQ9NYB0 399 aa20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms