RNA–Protein interactions for RNA: ENST00000481800.1

COL9A3-212, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-212ENST00000481800 CARD11Q9BXL7 1154 aa25.11■■□□□ 1.61
COL9A3-212ENST00000481800 TRPM3Q9HCF6 1732 aaPredicted RBP25.11■■□□□ 1.61
COL9A3-212ENST00000481800 MARF1Q9Y4F3 1742 aaKnown RBP25.11■■□□□ 1.61
COL9A3-212ENST00000481800 PPIP5K1Q6PFW1 1433 aa25.11■■□□□ 1.61
COL9A3-212ENST00000481800 CCDC9Q9Y3X0 531 aaKnown RBP25.09■■□□□ 1.61
COL9A3-212ENST00000481800 CABP1Q9NZU7 370 aa25.08■■□□□ 1.61
COL9A3-212ENST00000481800 QRICH2Q9H0J4 1663 aa25.07■■□□□ 1.6
COL9A3-212ENST00000481800 NUTM2GQ5VZR2 741 aa25.07■■□□□ 1.6
COL9A3-212ENST00000481800 ALS2Q96Q42 1657 aa25.07■■□□□ 1.6
COL9A3-212ENST00000481800 VPS72Q15906 364 aa25.06■■□□□ 1.6
COL9A3-212ENST00000481800 ABTB2Q8N961 1025 aa25.06■■□□□ 1.6
COL9A3-212ENST00000481800 TOPAZ1Q8N9V7 1692 aa25.05■■□□□ 1.6
COL9A3-212ENST00000481800 PRDM11Q9NQV5 511 aa25.04■■□□□ 1.6
COL9A3-212ENST00000481800 BTG4Q9NY30 223 aa25.04■■□□□ 1.6
COL9A3-212ENST00000481800 ATAD2Q6PL18 1390 aa25.04■■□□□ 1.6
COL9A3-212ENST00000481800 RALGAPBQ86X10 1494 aa25.03■■□□□ 1.6
COL9A3-212ENST00000481800 ABCA3Q99758 1704 aa25.02■■□□□ 1.6
COL9A3-212ENST00000481800 BRD4O60885 1362 aaPredicted RBP25.01■■□□□ 1.59
COL9A3-212ENST00000481800 TNKS1BP1Q9C0C2 1729 aaKnown RBP25■■□□□ 1.59
COL9A3-212ENST00000481800 NLRP13Q86W25 1043 aa25■■□□□ 1.59
COL9A3-212ENST00000481800 ZC3H6P61129 1189 aaKnown RBP24.99■■□□□ 1.59
COL9A3-212ENST00000481800 KIAA0232Q92628 1395 aa24.98■■□□□ 1.59
COL9A3-212ENST00000481800 ZNF692Q9BU19 519 aaPredicted RBP24.97■■□□□ 1.59
COL9A3-212ENST00000481800 PCGF6Q9BYE7 350 aa24.97■■□□□ 1.59
COL9A3-212ENST00000481800 NWD2Q9ULI1 1742 aa24.96■■□□□ 1.59
COL9A3-212ENST00000481800 CHRNA2Q15822 529 aa24.96■■□□□ 1.59
COL9A3-212ENST00000481800 SEPT12Q8IYM1 358 aa24.96■■□□□ 1.59
COL9A3-212ENST00000481800 PLCH1Q4KWH8 1693 aa24.96■■□□□ 1.59
COL9A3-212ENST00000481800 GLI3P10071 1580 aa24.96■■□□□ 1.59
COL9A3-212ENST00000481800 USP6P35125 1406 aa24.95■■□□□ 1.59
COL9A3-212ENST00000481800 SBNO2Q9Y2G9 1366 aa24.95■■□□□ 1.59
COL9A3-212ENST00000481800 A0A0G2JS52 829 aa24.95■■□□□ 1.58
COL9A3-212ENST00000481800 MYT1Q01538 1121 aa24.95■■□□□ 1.58
COL9A3-212ENST00000481800 NLRP6P59044 892 aa24.94■■□□□ 1.58
COL9A3-212ENST00000481800 COL14A1Q05707 1796 aaKnown RBP24.94■■□□□ 1.58
COL9A3-212ENST00000481800 USP19O94966 1318 aa24.92■■□□□ 1.58
COL9A3-212ENST00000481800 ONECUT3O60422 494 aaPredicted RBP24.92■■□□□ 1.58
COL9A3-212ENST00000481800 GCP02774 474 aa24.92■■□□□ 1.58
COL9A3-212ENST00000481800 FAM98CQ17RN3 349 aaKnown RBP24.91■■□□□ 1.58
COL9A3-212ENST00000481800 STRN4Q9NRL3 753 aa24.91■■□□□ 1.58
COL9A3-212ENST00000481800 EVA1CP58658 441 aa24.9■■□□□ 1.58
COL9A3-212ENST00000481800 CRYBG1Q9Y4K1 1723 aa24.89■■□□□ 1.58
COL9A3-212ENST00000481800 TMC1Q8TDI8 760 aa24.89■■□□□ 1.58
COL9A3-212ENST00000481800 SPATA31A5Q5VU36 1347 aa24.88■■□□□ 1.57
COL9A3-212ENST00000481800 SPATA31A7Q8IWB4 1347 aa24.88■■□□□ 1.57
COL9A3-212ENST00000481800 CCDC125Q86Z20 511 aa24.88■■□□□ 1.57
COL9A3-212ENST00000481800 TTC21BQ7Z4L5 1316 aa24.87■■□□□ 1.57
COL9A3-212ENST00000481800 PHRF1Q9P1Y6 1649 aaKnown RBP24.87■■□□□ 1.57
COL9A3-212ENST00000481800 KRT27Q7Z3Y8 459 aa24.87■■□□□ 1.57
COL9A3-212ENST00000481800 CPDO75976 1380 aa24.87■■□□□ 1.57
COL9A3-212ENST00000481800 KTN1Q86UP2 1357 aaKnown RBP24.87■■□□□ 1.57
COL9A3-212ENST00000481800 CLSPNQ9HAW4 1339 aa24.86■■□□□ 1.57
COL9A3-212ENST00000481800 SSH2Q76I76 1423 aa24.86■■□□□ 1.57
COL9A3-212ENST00000481800 ST20-MTHFSA0A0A6YYL1 179 aa24.86■■□□□ 1.57
COL9A3-212ENST00000481800 ZBTB7CA1YPR0 619 aa24.86■■□□□ 1.57
COL9A3-212ENST00000481800 SLC24A1O60721 1099 aa24.86■■□□□ 1.57
COL9A3-212ENST00000481800 TTC21AQ8NDW8 1320 aa24.86■■□□□ 1.57
COL9A3-212ENST00000481800 TIMELESSQ9UNS1 1208 aa24.85■■□□□ 1.57
COL9A3-212ENST00000481800 NRAPQ86VF7 1730 aa24.85■■□□□ 1.57
COL9A3-212ENST00000481800 HDGFL2Q7Z4V5 671 aaPredicted RBP24.84■■□□□ 1.57
COL9A3-212ENST00000481800 CPSF1Q10570 1443 aaKnown RBP24.84■■□□□ 1.57
COL9A3-212ENST00000481800 NRKQ7Z2Y5 1582 aa24.84■■□□□ 1.57
COL9A3-212ENST00000481800 PUS7Q96PZ0 661 aaKnown RBP24.83■■□□□ 1.57
COL9A3-212ENST00000481800 SPATA31A1Q5TZJ5 1347 aa24.83■■□□□ 1.56
COL9A3-212ENST00000481800 KCNH5Q8NCM2 988 aa24.81■■□□□ 1.56
COL9A3-212ENST00000481800 SLC12A5Q9H2X9 1139 aa24.81■■□□□ 1.56
COL9A3-212ENST00000481800 USP35Q9P2H5 1018 aa24.81■■□□□ 1.56
COL9A3-212ENST00000481800 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.8■■□□□ 1.56
COL9A3-212ENST00000481800 TESK2Q96S53 571 aa24.8■■□□□ 1.56
COL9A3-212ENST00000481800 TERF2IPQ9NYB0 399 aa24.8■■□□□ 1.56
COL9A3-212ENST00000481800 SF3B2Q13435 895 aaKnown RBP24.79■■□□□ 1.56
COL9A3-212ENST00000481800 LARP1Q6PKG0 1096 aaKnown RBP24.79■■□□□ 1.56
COL9A3-212ENST00000481800 SOX12O15370 315 aa24.78■■□□□ 1.56
COL9A3-212ENST00000481800 CAMTA1Q9Y6Y1 1673 aa24.77■■□□□ 1.56
COL9A3-212ENST00000481800 BLMP54132 1417 aaPredicted RBP24.77■■□□□ 1.56
COL9A3-212ENST00000481800 SLIT3O75094 1523 aa24.76■■□□□ 1.55
COL9A3-212ENST00000481800 CCER1Q8TC90 406 aaPredicted RBP24.76■■□□□ 1.55
COL9A3-212ENST00000481800 AATKQ6ZMQ8 1374 aa24.76■■□□□ 1.55
COL9A3-212ENST00000481800 USP47Q96K76 1375 aa24.76■■□□□ 1.55
COL9A3-212ENST00000481800 PIK3C2AO00443 1686 aa24.75■■□□□ 1.55
COL9A3-212ENST00000481800 TMF1P82094 1093 aa24.74■■□□□ 1.55
COL9A3-212ENST00000481800 BARGINQ6ZT62 677 aa24.74■■□□□ 1.55
COL9A3-212ENST00000481800 TCP11L2Q8N4U5 519 aa24.74■■□□□ 1.55
COL9A3-212ENST00000481800 AKAP12Q02952 1782 aa24.72■■□□□ 1.55
COL9A3-212ENST00000481800 CD163L1Q9NR16 1453 aa24.72■■□□□ 1.55
COL9A3-212ENST00000481800 NINLQ9Y2I6 1382 aa24.72■■□□□ 1.55
COL9A3-212ENST00000481800 ARHGEF25Q86VW2 580 aa24.72■■□□□ 1.55
COL9A3-212ENST00000481800 NME9Q86XW9 330 aa24.72■■□□□ 1.55
COL9A3-212ENST00000481800 THRAP3Q9Y2W1 955 aaKnown RBP24.72■■□□□ 1.55
COL9A3-212ENST00000481800 COL5A2P05997 1499 aaPredicted RBP24.71■■□□□ 1.55
COL9A3-212ENST00000481800 BRWD3Q6RI45 1802 aa24.71■■□□□ 1.55
COL9A3-212ENST00000481800 ZRANB1Q9UGI0 708 aa24.71■■□□□ 1.55
COL9A3-212ENST00000481800 LMO7Q8WWI1 1683 aa24.71■■□□□ 1.55
COL9A3-212ENST00000481800 EDC4Q6P2E9 1401 aaKnown RBP24.7■■□□□ 1.55
COL9A3-212ENST00000481800 A0A1W2PP64 1363 aa24.7■■□□□ 1.55
COL9A3-212ENST00000481800 FAM182BQ5T319 152 aa24.7■■□□□ 1.54
COL9A3-212ENST00000481800 USP31Q70CQ4 1352 aa24.69■■□□□ 1.54
COL9A3-212ENST00000481800 PDE3BQ13370 1112 aa24.69■■□□□ 1.54
COL9A3-212ENST00000481800 TOM1L2Q6ZVM7 507 aa24.69■■□□□ 1.54
COL9A3-212ENST00000481800 CDCA8Q53HL2 280 aa24.68■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 255.8 ms