RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 RBM27Q9P2N5 1060 aaKnown RBP23.25■■□□□ 1.31
CCDC88B-207ENST00000479965 IQSEC2Q5JU85 1478 aa23.25■■□□□ 1.31
CCDC88B-207ENST00000479965 PRIM1P49642 420 aaKnown RBP23.25■■□□□ 1.31
CCDC88B-207ENST00000479965 PRDM4Q9UKN5 801 aa23.24■■□□□ 1.31
CCDC88B-207ENST00000479965 PKP1Q13835 747 aa23.24■■□□□ 1.31
CCDC88B-207ENST00000479965 STAC3Q96MF2 364 aa23.24■■□□□ 1.31
CCDC88B-207ENST00000479965 NOL7Q9UMY1 257 aaKnown RBP23.24■■□□□ 1.31
CCDC88B-207ENST00000479965 IPO8O15397 1037 aaKnown RBP23.23■■□□□ 1.31
CCDC88B-207ENST00000479965 PRPF40AO75400 957 aaKnown RBP23.23■■□□□ 1.31
CCDC88B-207ENST00000479965 MAP7D2Q96T17 732 aa23.23■■□□□ 1.31
CCDC88B-207ENST00000479965 FOXD4L5Q5VV16 416 aaPredicted RBP23.22■■□□□ 1.31
CCDC88B-207ENST00000479965 FOXD4L4Q8WXT5 416 aaPredicted RBP23.22■■□□□ 1.31
CCDC88B-207ENST00000479965 DUOX2Q9NRD8 1548 aa23.22■■□□□ 1.31
CCDC88B-207ENST00000479965 CT47B1P0C2W7 299 aaPredicted RBP23.21■■□□□ 1.31
CCDC88B-207ENST00000479965 RNF214Q8ND24 703 aa23.21■■□□□ 1.31
CCDC88B-207ENST00000479965 TMPOP42166 694 aaKnown RBP23.21■■□□□ 1.31
CCDC88B-207ENST00000479965 TTC37Q6PGP7 1564 aa23.21■■□□□ 1.31
CCDC88B-207ENST00000479965 CEP152O94986 1710 aa23.21■■□□□ 1.31
CCDC88B-207ENST00000479965 ZNF445P59923 1031 aa23.2■■□□□ 1.3
CCDC88B-207ENST00000479965 CHAMP1Q96JM3 812 aa23.2■■□□□ 1.3
CCDC88B-207ENST00000479965 KANK1Q14678 1352 aa23.2■■□□□ 1.3
CCDC88B-207ENST00000479965 PREX2Q70Z35 1606 aa23.2■■□□□ 1.3
CCDC88B-207ENST00000479965 KIF16BQ96L93 1317 aa23.2■■□□□ 1.3
CCDC88B-207ENST00000479965 EIF2AK3Q9NZJ5 1116 aaKnown RBP23.19■■□□□ 1.3
CCDC88B-207ENST00000479965 TERF1P54274 439 aa23.19■■□□□ 1.3
CCDC88B-207ENST00000479965 LMBRD1Q9NUN5 540 aa23.18■■□□□ 1.3
CCDC88B-207ENST00000479965 A0A0U1RQG5 324 aaPredicted RBP23.18■■□□□ 1.3
CCDC88B-207ENST00000479965 TMEM132EQ6IEE7 984 aa23.17■■□□□ 1.3
CCDC88B-207ENST00000479965 ZNF500O60304 480 aaPredicted RBP23.17■■□□□ 1.3
CCDC88B-207ENST00000479965 PTMAP06454 111 aaKnown RBP23.17■■□□□ 1.3
CCDC88B-207ENST00000479965 AFAP1Q8N556 730 aa23.17■■□□□ 1.3
CCDC88B-207ENST00000479965 TRIM35Q9UPQ4 493 aa23.17■■□□□ 1.3
CCDC88B-207ENST00000479965 ZKSCAN5Q9Y2L8 839 aa23.17■■□□□ 1.3
CCDC88B-207ENST00000479965 PTPRTO14522 1441 aa23.17■■□□□ 1.3
CCDC88B-207ENST00000479965 IBTKQ9P2D0 1353 aaPredicted RBP23.17■■□□□ 1.3
CCDC88B-207ENST00000479965 NUCB2P80303 420 aa23.17■■□□□ 1.3
CCDC88B-207ENST00000479965 DNTTIP2Q5QJE6 756 aaKnown RBP23.17■■□□□ 1.3
CCDC88B-207ENST00000479965 ZHX1Q9UKY1 873 aaPredicted RBP23.17■■□□□ 1.3
CCDC88B-207ENST00000479965 SYCE3A1L190 88 aa23.16■■□□□ 1.3
CCDC88B-207ENST00000479965 MPNDQ8N594 471 aa23.16■■□□□ 1.3
CCDC88B-207ENST00000479965 SENP3Q9H4L4 574 aaPredicted RBP23.16■■□□□ 1.3
CCDC88B-207ENST00000479965 ZNF518AQ6AHZ1 1483 aa23.16■■□□□ 1.3
CCDC88B-207ENST00000479965 AK9Q5TCS8 1911 aa23.16■■□□□ 1.3
CCDC88B-207ENST00000479965 SHPRHQ149N8 1683 aa23.16■■□□□ 1.3
CCDC88B-207ENST00000479965 ERCC6Q03468 1493 aa23.16■■□□□ 1.3
CCDC88B-207ENST00000479965 HS1BP3Q53T59 392 aa23.15■■□□□ 1.3
CCDC88B-207ENST00000479965 CDC45O75419 566 aa23.15■■□□□ 1.3
CCDC88B-207ENST00000479965 SPAG9O60271 1321 aaKnown RBP23.14■■□□□ 1.3
CCDC88B-207ENST00000479965 ELL2O00472 640 aaPredicted RBP23.14■■□□□ 1.3
CCDC88B-207ENST00000479965 CSPP1Q1MSJ5 1256 aa23.13■■□□□ 1.29
CCDC88B-207ENST00000479965 ZGPATQ8N5A5 531 aaKnown RBP23.13■■□□□ 1.29
CCDC88B-207ENST00000479965 SAFB2Q14151 953 aaKnown RBP eCLIP23.13■■□□□ 1.29
CCDC88B-207ENST00000479965 CLEC17AQ6ZS10 378 aa23.13■■□□□ 1.29
CCDC88B-207ENST00000479965 KIF3BO15066 747 aa23.13■■□□□ 1.29
CCDC88B-207ENST00000479965 PLEKHG5O94827 1062 aa23.13■■□□□ 1.29
CCDC88B-207ENST00000479965 GPT2Q8TD30 523 aa23.13■■□□□ 1.29
CCDC88B-207ENST00000479965 PDLIM2Q96JY6 352 aa23.13■■□□□ 1.29
CCDC88B-207ENST00000479965 EFCAB2Q5VUJ9 269 aa23.12■■□□□ 1.29
CCDC88B-207ENST00000479965 GCC1Q96CN9 775 aa23.12■■□□□ 1.29
CCDC88B-207ENST00000479965 SPHKAPQ2M3C7 1700 aa23.12■■□□□ 1.29
CCDC88B-207ENST00000479965 DYNC1I1O14576 645 aa23.11■■□□□ 1.29
CCDC88B-207ENST00000479965 RABEP1Q15276 862 aa23.11■■□□□ 1.29
CCDC88B-207ENST00000479965 GGNBP2Q9H3C7 697 aa23.11■■□□□ 1.29
CCDC88B-207ENST00000479965 CLTCL1P53675 1640 aa23.1■■□□□ 1.29
CCDC88B-207ENST00000479965 JARID2Q92833 1246 aaPredicted RBP23.1■■□□□ 1.29
CCDC88B-207ENST00000479965 TRPM2O94759 1503 aa23.09■■□□□ 1.29
CCDC88B-207ENST00000479965 SASS6Q6UVJ0 657 aa23.09■■□□□ 1.29
CCDC88B-207ENST00000479965 TMEM63CQ9P1W3 806 aa23.09■■□□□ 1.29
CCDC88B-207ENST00000479965 CCDC39Q9UFE4 941 aa23.09■■□□□ 1.29
CCDC88B-207ENST00000479965 APBB1O00213 710 aa23.09■■□□□ 1.29
CCDC88B-207ENST00000479965 PPIP5K1Q6PFW1 1433 aa23.09■■□□□ 1.29
CCDC88B-207ENST00000479965 NSFL1CQ9UNZ2 370 aaKnown RBP23.08■■□□□ 1.29
CCDC88B-207ENST00000479965 CD109Q6YHK3 1445 aa23.08■■□□□ 1.29
CCDC88B-207ENST00000479965 ZBTB7BO15156 539 aaPredicted RBP23.08■■□□□ 1.29
CCDC88B-207ENST00000479965 TSC1Q92574 1164 aa23.08■■□□□ 1.29
CCDC88B-207ENST00000479965 TRAPPC8Q9Y2L5 1435 aa23.08■■□□□ 1.29
CCDC88B-207ENST00000479965 ABCC11Q96J66 1382 aa23.07■■□□□ 1.28
CCDC88B-207ENST00000479965 GSPT1P15170 499 aaKnown RBP23.07■■□□□ 1.28
CCDC88B-207ENST00000479965 FOXD4L6Q3SYB3 417 aaPredicted RBP23.07■■□□□ 1.28
CCDC88B-207ENST00000479965 TPRNQ4KMQ1 711 aa23.07■■□□□ 1.28
CCDC88B-207ENST00000479965 FOXD4L3Q6VB84 417 aaPredicted RBP23.07■■□□□ 1.28
CCDC88B-207ENST00000479965 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.07■■□□□ 1.28
CCDC88B-207ENST00000479965 MTERF4Q7Z6M4 381 aaKnown RBP23.07■■□□□ 1.28
CCDC88B-207ENST00000479965 PLEKHF1Q96S99 279 aa23.07■■□□□ 1.28
CCDC88B-207ENST00000479965 NOS1P29475 1434 aa23.06■■□□□ 1.28
CCDC88B-207ENST00000479965 LRSAM1Q6UWE0 723 aa23.06■■□□□ 1.28
CCDC88B-207ENST00000479965 SMAP1Q8IYB5 467 aaPredicted RBP23.06■■□□□ 1.28
CCDC88B-207ENST00000479965 CABP2Q9NPB3 220 aa23.06■■□□□ 1.28
CCDC88B-207ENST00000479965 UGGT1Q9NYU2 1555 aa23.06■■□□□ 1.28
CCDC88B-207ENST00000479965 SIRT2Q8IXJ6 389 aa23.05■■□□□ 1.28
CCDC88B-207ENST00000479965 NUTM2DQ5VT03 806 aaPredicted RBP23.05■■□□□ 1.28
CCDC88B-207ENST00000479965 C16orf71Q8IYS4 520 aaPredicted RBP23.05■■□□□ 1.28
CCDC88B-207ENST00000479965 ST18O60284 1047 aa23.04■■□□□ 1.28
CCDC88B-207ENST00000479965 THUMPD2Q9BTF0 503 aaKnown RBP23.04■■□□□ 1.28
CCDC88B-207ENST00000479965 CYP2E1P05181 493 aaPredicted RBP23.03■■□□□ 1.28
CCDC88B-207ENST00000479965 ZNF830Q96NB3 372 aaPredicted RBP23.02■■□□□ 1.28
CCDC88B-207ENST00000479965 FAM177BA6PVY3 158 aa23.02■■□□□ 1.27
CCDC88B-207ENST00000479965 ALDH1L2Q3SY69 923 aa23.02■■□□□ 1.27
CCDC88B-207ENST00000479965 MCM5P33992 734 aa23.01■■□□□ 1.27
CCDC88B-207ENST00000479965 KIAA2012Q0VF49 1180 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms