RNA–Protein interactions for RNA: ENST00000479602.5

DDX56-211, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 440 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-211ENST00000479602 BTG4Q9NY30 223 aa12.73□□□□□ -0.37
DDX56-211ENST00000479602 TRPM3Q9HCF6 1732 aaPredicted RBP12.73□□□□□ -0.37
DDX56-211ENST00000479602 POLR3AO14802 1390 aaPredicted RBP12.72□□□□□ -0.37
DDX56-211ENST00000479602 SPATA31A5Q5VU36 1347 aa12.72□□□□□ -0.37
DDX56-211ENST00000479602 SPATA31A7Q8IWB4 1347 aa12.72□□□□□ -0.37
DDX56-211ENST00000479602 LMOD2Q6P5Q4 547 aa12.72□□□□□ -0.37
DDX56-211ENST00000479602 DEFB132Q7Z7B7 95 aa12.72□□□□□ -0.37
DDX56-211ENST00000479602 CDK19Q9BWU1 502 aa12.72□□□□□ -0.37
DDX56-211ENST00000479602 NBPF1Q3BBV0 1214 aa12.71□□□□□ -0.37
DDX56-211ENST00000479602 NBPF8Q3BBV2 869 aa12.71□□□□□ -0.37
DDX56-211ENST00000479602 CCDC61Q9Y6R9 512 aa12.71□□□□□ -0.37
DDX56-211ENST00000479602 ATP7BP35670 1465 aa12.71□□□□□ -0.38
DDX56-211ENST00000479602 NWD2Q9ULI1 1742 aa12.71□□□□□ -0.38
DDX56-211ENST00000479602 ALS2Q96Q42 1657 aa12.7□□□□□ -0.38
DDX56-211ENST00000479602 HAP1P54257 671 aaPredicted RBP12.7□□□□□ -0.38
DDX56-211ENST00000479602 NGDNQ8NEJ9 315 aaKnown RBP12.7□□□□□ -0.38
DDX56-211ENST00000479602 NEUROD1Q13562 356 aa12.69□□□□□ -0.38
DDX56-211ENST00000479602 FAM98CQ17RN3 349 aaKnown RBP12.69□□□□□ -0.38
DDX56-211ENST00000479602 ABCA3Q99758 1704 aa12.68□□□□□ -0.38
DDX56-211ENST00000479602 BRWD3Q6RI45 1802 aa12.67□□□□□ -0.38
DDX56-211ENST00000479602 ACEP12821 1306 aa12.67□□□□□ -0.38
DDX56-211ENST00000479602 SPATA31A1Q5TZJ5 1347 aa12.67□□□□□ -0.38
DDX56-211ENST00000479602 SLC24A1O60721 1099 aa12.67□□□□□ -0.38
DDX56-211ENST00000479602 ROCK2O75116 1388 aaKnown RBP12.67□□□□□ -0.38
DDX56-211ENST00000479602 PLEKHG5O94827 1062 aa12.66□□□□□ -0.38
DDX56-211ENST00000479602 PLCH1Q4KWH8 1693 aa12.66□□□□□ -0.38
DDX56-211ENST00000479602 KIAA0232Q92628 1395 aa12.66□□□□□ -0.38
DDX56-211ENST00000479602 NRAPQ86VF7 1730 aa12.65□□□□□ -0.38
DDX56-211ENST00000479602 CRYBG1Q9Y4K1 1723 aa12.65□□□□□ -0.38
DDX56-211ENST00000479602 PAK3O75914 559 aaPredicted RBP12.65□□□□□ -0.38
DDX56-211ENST00000479602 ZEB1P37275 1124 aaPredicted RBP12.65□□□□□ -0.38
DDX56-211ENST00000479602 PRDM11Q9NQV5 511 aa12.65□□□□□ -0.38
DDX56-211ENST00000479602 CCDC9Q9Y3X0 531 aaKnown RBP12.65□□□□□ -0.38
DDX56-211ENST00000479602 CPDO75976 1380 aa12.65□□□□□ -0.38
DDX56-211ENST00000479602 USP19O94966 1318 aa12.64□□□□□ -0.39
DDX56-211ENST00000479602 COL14A1Q05707 1796 aaKnown RBP12.64□□□□□ -0.39
DDX56-211ENST00000479602 BARGINQ6ZT62 677 aa12.64□□□□□ -0.39
DDX56-211ENST00000479602 DISP2A7MBM2 1401 aa12.63□□□□□ -0.39
DDX56-211ENST00000479602 CHRNA2Q15822 529 aa12.63□□□□□ -0.39
DDX56-211ENST00000479602 BRD4O60885 1362 aaPredicted RBP12.62□□□□□ -0.39
DDX56-211ENST00000479602 ZC3H6P61129 1189 aaKnown RBP12.62□□□□□ -0.39
DDX56-211ENST00000479602 SF3B2Q13435 895 aaKnown RBP12.62□□□□□ -0.39
DDX56-211ENST00000479602 FAM182BQ5T319 152 aa12.62□□□□□ -0.39
DDX56-211ENST00000479602 CAMKK2Q96RR4 588 aa12.62□□□□□ -0.39
DDX56-211ENST00000479602 SSH2Q76I76 1423 aa12.62□□□□□ -0.39
DDX56-211ENST00000479602 QRICH2Q9H0J4 1663 aa12.61□□□□□ -0.39
DDX56-211ENST00000479602 THSD7AQ9UPZ6 1657 aa12.61□□□□□ -0.39
DDX56-211ENST00000479602 GCP02774 474 aa12.61□□□□□ -0.39
DDX56-211ENST00000479602 EN1Q05925 392 aaPredicted RBP12.61□□□□□ -0.39
DDX56-211ENST00000479602 ABTB2Q8N961 1025 aa12.61□□□□□ -0.39
DDX56-211ENST00000479602 PUS7Q96PZ0 661 aaKnown RBP12.61□□□□□ -0.39
DDX56-211ENST00000479602 CENPJQ9HC77 1338 aaPredicted RBP12.61□□□□□ -0.39
DDX56-211ENST00000479602 BAG6P46379 1132 aa12.6□□□□□ -0.39
DDX56-211ENST00000479602 NUTM2GQ5VZR2 741 aa12.6□□□□□ -0.39
DDX56-211ENST00000479602 FAM196AQ6ZSG2 479 aa12.6□□□□□ -0.39
DDX56-211ENST00000479602 CABP2Q9NPB3 220 aa12.6□□□□□ -0.39
DDX56-211ENST00000479602 CABP1Q9NZU7 370 aa12.6□□□□□ -0.39
DDX56-211ENST00000479602 CAMTA1Q9Y6Y1 1673 aa12.6□□□□□ -0.39
DDX56-211ENST00000479602 LARP1Q6PKG0 1096 aaKnown RBP12.59□□□□□ -0.39
DDX56-211ENST00000479602 NLRP13Q86W25 1043 aa12.59□□□□□ -0.39
DDX56-211ENST00000479602 USP47Q96K76 1375 aa12.58□□□□□ -0.4
DDX56-211ENST00000479602 TOPAZ1Q8N9V7 1692 aa12.58□□□□□ -0.4
DDX56-211ENST00000479602 CARD11Q9BXL7 1154 aa12.58□□□□□ -0.4
DDX56-211ENST00000479602 THRAP3Q9Y2W1 955 aaKnown RBP12.58□□□□□ -0.4
DDX56-211ENST00000479602 ITSN1Q15811 1721 aa12.57□□□□□ -0.4
DDX56-211ENST00000479602 TCP11L2Q8N4U5 519 aa12.57□□□□□ -0.4
DDX56-211ENST00000479602 STRN4Q9NRL3 753 aa12.57□□□□□ -0.4
DDX56-211ENST00000479602 PPIP5K1Q6PFW1 1433 aa12.56□□□□□ -0.4
DDX56-211ENST00000479602 SRPK2P78362 688 aaKnown RBP12.56□□□□□ -0.4
DDX56-211ENST00000479602 EZH2Q15910 746 aaKnown RBP12.56□□□□□ -0.4
DDX56-211ENST00000479602 AATKQ6ZMQ8 1374 aa12.56□□□□□ -0.4
DDX56-211ENST00000479602 USP6P35125 1406 aa12.55□□□□□ -0.4
DDX56-211ENST00000479602 LMO7Q8WWI1 1683 aa12.55□□□□□ -0.4
DDX56-211ENST00000479602 A0A0G2JS52 829 aa12.55□□□□□ -0.4
DDX56-211ENST00000479602 PSDA5PKW4 1024 aaPredicted RBP12.55□□□□□ -0.4
DDX56-211ENST00000479602 TRIM37O94972 964 aa12.55□□□□□ -0.4
DDX56-211ENST00000479602 EVA1CP58658 441 aa12.55□□□□□ -0.4
DDX56-211ENST00000479602 MYT1Q01538 1121 aa12.55□□□□□ -0.4
DDX56-211ENST00000479602 NINLQ9Y2I6 1382 aa12.55□□□□□ -0.4
DDX56-211ENST00000479602 TESK2Q96S53 571 aa12.54□□□□□ -0.4
DDX56-211ENST00000479602 AXIN2Q9Y2T1 843 aa12.54□□□□□ -0.4
DDX56-211ENST00000479602 NRKQ7Z2Y5 1582 aa12.54□□□□□ -0.4
DDX56-211ENST00000479602 PHRF1Q9P1Y6 1649 aaKnown RBP12.54□□□□□ -0.4
DDX56-211ENST00000479602 PARD3Q8TEW0 1356 aa12.54□□□□□ -0.4
DDX56-211ENST00000479602 NLRP6P59044 892 aa12.53□□□□□ -0.4
DDX56-211ENST00000479602 ARHGEF25Q86VW2 580 aa12.53□□□□□ -0.4
DDX56-211ENST00000479602 ZNF692Q9BU19 519 aaPredicted RBP12.53□□□□□ -0.4
DDX56-211ENST00000479602 R3HDM1Q15032 1099 aaKnown RBP12.52□□□□□ -0.41
DDX56-211ENST00000479602 USP35Q9P2H5 1018 aa12.52□□□□□ -0.41
DDX56-211ENST00000479602 CPSF1Q10570 1443 aaKnown RBP12.52□□□□□ -0.41
DDX56-211ENST00000479602 COL5A2P05997 1499 aaPredicted RBP12.52□□□□□ -0.41
DDX56-211ENST00000479602 SLIT3O75094 1523 aa12.52□□□□□ -0.41
DDX56-211ENST00000479602 LRP5O75197 1615 aa12.51□□□□□ -0.41
DDX56-211ENST00000479602 C11orf95C9JLR9 678 aaPredicted RBP12.51□□□□□ -0.41
DDX56-211ENST00000479602 APBA3O96018 575 aa12.51□□□□□ -0.41
DDX56-211ENST00000479602 EIF4G2P78344 907 aaKnown RBP eCLIP12.51□□□□□ -0.41
DDX56-211ENST00000479602 PDE3BQ13370 1112 aa12.51□□□□□ -0.41
DDX56-211ENST00000479602 TTC21BQ7Z4L5 1316 aa12.51□□□□□ -0.41
DDX56-211ENST00000479602 EVC2Q86UK5 1308 aa12.51□□□□□ -0.41
DDX56-211ENST00000479602 BCL9O00512 1426 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms