RNA–Protein interactions for RNA: ENST00000479510.2

SYNGAP1-206, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 2

Gene SYNGAP1, Length 2,073 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-206ENST00000479510 POGKQ9P215 609 aa31.45■■■□□ 2.63
SYNGAP1-206ENST00000479510 ARHGEF40Q8TER5 1519 aa31.45■■■□□ 2.62
SYNGAP1-206ENST00000479510 DZIP1LQ8IYY4 767 aaKnown RBP31.44■■■□□ 2.62
SYNGAP1-206ENST00000479510 GGNBP2Q9H3C7 697 aa31.44■■■□□ 2.62
SYNGAP1-206ENST00000479510 PPP6R1Q9UPN7 881 aa31.44■■■□□ 2.62
SYNGAP1-206ENST00000479510 DLC1Q96QB1 1528 aa31.44■■■□□ 2.62
SYNGAP1-206ENST00000479510 CDC42BPGQ6DT37 1551 aa31.43■■■□□ 2.62
SYNGAP1-206ENST00000479510 TRIM35Q9UPQ4 493 aa31.42■■■□□ 2.62
SYNGAP1-206ENST00000479510 REREQ9P2R6 1566 aa31.42■■■□□ 2.62
SYNGAP1-206ENST00000479510 BCL2L13Q9BXK5 485 aa31.42■■■□□ 2.62
SYNGAP1-206ENST00000479510 U2SURPO15042 1029 aaKnown RBP31.41■■■□□ 2.62
SYNGAP1-206ENST00000479510 BECN1Q14457 450 aa31.41■■■□□ 2.62
SYNGAP1-206ENST00000479510 FTSJ3Q8IY81 847 aaKnown RBP31.41■■■□□ 2.62
SYNGAP1-206ENST00000479510 MINK1Q8N4C8 1332 aaPredicted RBP31.41■■■□□ 2.62
SYNGAP1-206ENST00000479510 PDZRN3Q9UPQ7 1066 aa31.4■■■□□ 2.62
SYNGAP1-206ENST00000479510 TNNQ9UQP3 1299 aa31.4■■■□□ 2.62
SYNGAP1-206ENST00000479510 KIF20BQ96Q89 1820 aa31.39■■■□□ 2.62
SYNGAP1-206ENST00000479510 DIAPH1O60610 1272 aaKnown RBP31.39■■■□□ 2.62
SYNGAP1-206ENST00000479510 UPF2Q9HAU5 1272 aaKnown RBP31.38■■■□□ 2.61
SYNGAP1-206ENST00000479510 AGLP35573 1532 aa31.37■■■□□ 2.61
SYNGAP1-206ENST00000479510 EXOSC9Q06265 439 aaKnown RBP31.37■■■□□ 2.61
SYNGAP1-206ENST00000479510 GSE1Q14687 1217 aa31.37■■■□□ 2.61
SYNGAP1-206ENST00000479510 SMC4Q9NTJ3 1288 aa31.37■■■□□ 2.61
SYNGAP1-206ENST00000479510 DDX19BQ9UMR2 479 aa31.36■■■□□ 2.61
SYNGAP1-206ENST00000479510 ATP7BP35670 1465 aa31.36■■■□□ 2.61
SYNGAP1-206ENST00000479510 HDAC1Q13547 482 aaPredicted RBP31.36■■■□□ 2.61
SYNGAP1-206ENST00000479510 CDK19Q9BWU1 502 aa31.36■■■□□ 2.61
SYNGAP1-206ENST00000479510 TSR2Q969E8 191 aaKnown RBP31.34■■■□□ 2.61
SYNGAP1-206ENST00000479510 FCHSD2O94868 740 aa31.34■■■□□ 2.61
SYNGAP1-206ENST00000479510 SEC24BO95487 1268 aa31.33■■■□□ 2.61
SYNGAP1-206ENST00000479510 ATF7IPQ6VMQ6 1270 aa31.33■■■□□ 2.61
SYNGAP1-206ENST00000479510 KIF16BQ96L93 1317 aa31.31■■■□□ 2.6
SYNGAP1-206ENST00000479510 TRIM27P14373 513 aa31.31■■■□□ 2.6
SYNGAP1-206ENST00000479510 SSH1Q8WYL5 1049 aa31.31■■■□□ 2.6
SYNGAP1-206ENST00000479510 ZNF428Q96B54 188 aa31.31■■■□□ 2.6
SYNGAP1-206ENST00000479510 RIPK4P57078 832 aa31.31■■■□□ 2.6
SYNGAP1-206ENST00000479510 IPO8O15397 1037 aaKnown RBP31.3■■■□□ 2.6
SYNGAP1-206ENST00000479510 ALDH1L2Q3SY69 923 aa31.3■■■□□ 2.6
SYNGAP1-206ENST00000479510 TBC1D32Q96NH3 1257 aa31.3■■■□□ 2.6
SYNGAP1-206ENST00000479510 FBXO31Q5XUX0 539 aaPredicted RBP31.28■■■□□ 2.6
SYNGAP1-206ENST00000479510 CABP1Q9NZU7 370 aa31.28■■■□□ 2.6
SYNGAP1-206ENST00000479510 PPIP5K1Q6PFW1 1433 aa31.28■■■□□ 2.6
SYNGAP1-206ENST00000479510 SPATA31D1Q6ZQQ2 1576 aa31.27■■■□□ 2.6
SYNGAP1-206ENST00000479510 BRPF1P55201 1214 aaPredicted RBP31.26■■■□□ 2.6
SYNGAP1-206ENST00000479510 STAG3Q9UJ98 1225 aa31.26■■■□□ 2.6
SYNGAP1-206ENST00000479510 A2ML1A8K2U0 1454 aa31.26■■■□□ 2.59
SYNGAP1-206ENST00000479510 FAM135BQ49AJ0 1406 aa31.25■■■□□ 2.59
SYNGAP1-206ENST00000479510 LRRC7Q96NW7 1537 aa31.24■■■□□ 2.59
SYNGAP1-206ENST00000479510 SETD1AO15047 1707 aaKnown RBP31.23■■■□□ 2.59
SYNGAP1-206ENST00000479510 SMC5Q8IY18 1101 aa31.22■■■□□ 2.59
SYNGAP1-206ENST00000479510 NOB1Q9ULX3 412 aaKnown RBP31.22■■■□□ 2.59
SYNGAP1-206ENST00000479510 CALD1Q05682 793 aaKnown RBP31.21■■■□□ 2.59
SYNGAP1-206ENST00000479510 ITPRIPQ8IWB1 547 aa31.21■■■□□ 2.59
SYNGAP1-206ENST00000479510 RSPH6AQ9H0K4 717 aa31.21■■■□□ 2.59
SYNGAP1-206ENST00000479510 RIMS2Q9UQ26 1411 aa31.21■■■□□ 2.59
SYNGAP1-206ENST00000479510 FRAT2O75474 233 aaPredicted RBP31.2■■■□□ 2.59
SYNGAP1-206ENST00000479510 ZBTB40Q9NUA8 1239 aa31.2■■■□□ 2.59
SYNGAP1-206ENST00000479510 CYB5RLQ6IPT4 315 aa31.2■■■□□ 2.58
SYNGAP1-206ENST00000479510 RIMBP3CA6NJZ7 1639 aa31.19■■■□□ 2.58
SYNGAP1-206ENST00000479510 RIMBP3BA6NNM3 1639 aa31.19■■■□□ 2.58
SYNGAP1-206ENST00000479510 RIMBP3Q9UFD9 1639 aa31.19■■■□□ 2.58
SYNGAP1-206ENST00000479510 POLKQ9UBT6 870 aa31.19■■■□□ 2.58
SYNGAP1-206ENST00000479510 EDC4Q6P2E9 1401 aaKnown RBP31.18■■■□□ 2.58
SYNGAP1-206ENST00000479510 CPSF1Q10570 1443 aaKnown RBP31.17■■■□□ 2.58
SYNGAP1-206ENST00000479510 CHMP4BQ9H444 224 aaKnown RBP31.17■■■□□ 2.58
SYNGAP1-206ENST00000479510 TMEM57Q8N5G2 664 aa31.16■■■□□ 2.58
SYNGAP1-206ENST00000479510 DIP2BQ9P265 1576 aa31.16■■■□□ 2.58
SYNGAP1-206ENST00000479510 AATKQ6ZMQ8 1374 aa31.15■■■□□ 2.58
SYNGAP1-206ENST00000479510 NFE2L2Q16236 605 aa31.15■■■□□ 2.58
SYNGAP1-206ENST00000479510 CDK12Q9NYV4 1490 aaPredicted RBP31.15■■■□□ 2.58
SYNGAP1-206ENST00000479510 PRKAR2BP31323 418 aa31.14■■■□□ 2.58
SYNGAP1-206ENST00000479510 ARHGAP45Q92619 1136 aa31.13■■■□□ 2.57
SYNGAP1-206ENST00000479510 ANTXR1Q9H6X2 564 aa31.13■■■□□ 2.57
SYNGAP1-206ENST00000479510 ABCF1Q8NE71 845 aaKnown RBP eCLIP31.12■■■□□ 2.57
SYNGAP1-206ENST00000479510 SIRT1Q96EB6 747 aa31.12■■■□□ 2.57
SYNGAP1-206ENST00000479510 SENP3Q9H4L4 574 aaPredicted RBP31.11■■■□□ 2.57
SYNGAP1-206ENST00000479510 PIK3R4Q99570 1358 aa31.1■■■□□ 2.57
SYNGAP1-206ENST00000479510 TBC1D2Q9BYX2 928 aa31.09■■■□□ 2.57
SYNGAP1-206ENST00000479510 WASLO00401 505 aaPredicted RBP31.09■■■□□ 2.57
SYNGAP1-206ENST00000479510 FAM69CQ0P6D2 419 aa31.09■■■□□ 2.57
SYNGAP1-206ENST00000479510 WAPLQ7Z5K2 1190 aa31.09■■■□□ 2.57
SYNGAP1-206ENST00000479510 SUGP2Q8IX01 1082 aaKnown RBP eCLIP31.09■■■□□ 2.57
SYNGAP1-206ENST00000479510 IFT57Q9NWB7 429 aa31.09■■■□□ 2.57
SYNGAP1-206ENST00000479510 GNAI1P63096 354 aa31.07■■■□□ 2.56
SYNGAP1-206ENST00000479510 NUCB1Q02818 461 aa31.07■■■□□ 2.56
SYNGAP1-206ENST00000479510 MAP2P11137 1827 aaKnown RBP31.07■■■□□ 2.56
SYNGAP1-206ENST00000479510 PTCH1Q13635 1447 aa31.07■■■□□ 2.56
SYNGAP1-206ENST00000479510 NRXN3Q9Y4C0 1643 aa31.07■■■□□ 2.56
SYNGAP1-206ENST00000479510 KNDC1Q76NI1 1749 aa31.06■■■□□ 2.56
SYNGAP1-206ENST00000479510 IL13P35225 146 aa31.06■■■□□ 2.56
SYNGAP1-206ENST00000479510 C22orf23Q9BZE7 217 aa31.06■■■□□ 2.56
SYNGAP1-206ENST00000479510 TECPR2O15040 1411 aa31.06■■■□□ 2.56
SYNGAP1-206ENST00000479510 LMOD3Q0VAK6 560 aa31.05■■■□□ 2.56
SYNGAP1-206ENST00000479510 ZNF853P0CG23 659 aa31.04■■■□□ 2.56
SYNGAP1-206ENST00000479510 VAMP4O75379 141 aa31.02■■■□□ 2.56
SYNGAP1-206ENST00000479510 MON2Q7Z3U7 1717 aa31.01■■■□□ 2.56
SYNGAP1-206ENST00000479510 MRPL50Q8N5N7 158 aaKnown RBP31.01■■■□□ 2.56
SYNGAP1-206ENST00000479510 PHACTR3Q96KR7 559 aa31.01■■■□□ 2.55
SYNGAP1-206ENST00000479510 HDGFP51858 240 aaKnown RBP31■■■□□ 2.55
SYNGAP1-206ENST00000479510 IL27Q8NEV9 243 aa31■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 108 ms