RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 FOXC1Q12948 553 aa9.84□□□□□ -0.83
VPS50-214ENST00000477935 ZNF511Q8NB15 262 aa9.84□□□□□ -0.83
VPS50-214ENST00000477935 EPS8L1Q8TE68 723 aa9.84□□□□□ -0.83
VPS50-214ENST00000477935 PRR20EP86478 221 aa9.83□□□□□ -0.84
VPS50-214ENST00000477935 PRR20CP86479 221 aa9.83□□□□□ -0.84
VPS50-214ENST00000477935 PRR20DP86480 221 aa9.83□□□□□ -0.84
VPS50-214ENST00000477935 PRR20BP86481 221 aa9.83□□□□□ -0.84
VPS50-214ENST00000477935 PRR20AP86496 221 aa9.83□□□□□ -0.84
VPS50-214ENST00000477935 PDZRN3Q9UPQ7 1066 aa9.83□□□□□ -0.84
VPS50-214ENST00000477935 TNFRSF10AO00220 468 aa9.82□□□□□ -0.84
VPS50-214ENST00000477935 WNT7AO00755 349 aa9.82□□□□□ -0.84
VPS50-214ENST00000477935 RC3H1Q5TC82 1133 aaKnown RBP9.82□□□□□ -0.84
VPS50-214ENST00000477935 ARMC2Q8NEN0 867 aa9.82□□□□□ -0.84
VPS50-214ENST00000477935 IRX2Q9BZI1 471 aaPredicted RBP9.82□□□□□ -0.84
VPS50-214ENST00000477935 GJD4Q96KN9 370 aaPredicted RBP9.81□□□□□ -0.84
VPS50-214ENST00000477935 TRIM34Q9BYJ4 488 aa9.81□□□□□ -0.84
VPS50-214ENST00000477935 SNRKQ9NRH2 765 aa9.81□□□□□ -0.84
VPS50-214ENST00000477935 FKBPLQ9UIM3 349 aa9.81□□□□□ -0.84
VPS50-214ENST00000477935 NBPF14Q5TI25 921 aa9.8□□□□□ -0.84
VPS50-214ENST00000477935 MTMR14Q8NCE2 650 aa9.8□□□□□ -0.84
VPS50-214ENST00000477935 MRGPRX2Q96LB1 330 aa9.8□□□□□ -0.84
VPS50-214ENST00000477935 SOCS7O14512 581 aa9.79□□□□□ -0.84
VPS50-214ENST00000477935 GFRA3O60609 400 aa9.79□□□□□ -0.84
VPS50-214ENST00000477935 EHBP1Q8NDI1 1231 aa9.79□□□□□ -0.84
VPS50-214ENST00000477935 FOXJ1Q92949 421 aa9.79□□□□□ -0.84
VPS50-214ENST00000477935 NRG2O14511 850 aaPredicted RBP9.78□□□□□ -0.84
VPS50-214ENST00000477935 GPKOWQ92917 476 aaPredicted RBP eCLIP9.78□□□□□ -0.84
VPS50-214ENST00000477935 LAPTM4AQ15012 233 aa9.77□□□□□ -0.85
VPS50-214ENST00000477935 ZC3H4Q9UPT8 1303 aaKnown RBP9.77□□□□□ -0.85
VPS50-214ENST00000477935 SH3BP5LQ7L8J4 393 aa9.76□□□□□ -0.85
VPS50-214ENST00000477935 SH3RF1Q7Z6J0 888 aa9.76□□□□□ -0.85
VPS50-214ENST00000477935 BPHLQ86WA6 291 aaPredicted RBP9.76□□□□□ -0.85
VPS50-214ENST00000477935 PNMA1Q8ND90 353 aa9.76□□□□□ -0.85
VPS50-214ENST00000477935 TOR4AQ9NXH8 423 aa9.76□□□□□ -0.85
VPS50-214ENST00000477935 VARSP26640 1264 aaKnown RBP9.75□□□□□ -0.85
VPS50-214ENST00000477935 AGERQ15109 404 aa9.75□□□□□ -0.85
VPS50-214ENST00000477935 C4orf48Q5BLP8 95 aa9.75□□□□□ -0.85
VPS50-214ENST00000477935 PDXDC2PQ6P474 469 aa9.75□□□□□ -0.85
VPS50-214ENST00000477935 CYP4X1Q8N118 509 aa9.75□□□□□ -0.85
VPS50-214ENST00000477935 APBB1O00213 710 aa9.74□□□□□ -0.85
VPS50-214ENST00000477935 SIAH2O43255 324 aa9.74□□□□□ -0.85
VPS50-214ENST00000477935 MCM6Q14566 821 aa9.74□□□□□ -0.85
VPS50-214ENST00000477935 SNIP1Q8TAD8 396 aaKnown RBP9.74□□□□□ -0.85
VPS50-214ENST00000477935 CCDC180Q9P1Z9 1646 aa9.74□□□□□ -0.85
VPS50-214ENST00000477935 MAGEB6P1A0A0J9YX57 407 aa9.73□□□□□ -0.85
VPS50-214ENST00000477935 NDUFB9Q9Y6M9 179 aa9.73□□□□□ -0.85
VPS50-214ENST00000477935 TTC24A2A3L6 582 aaPredicted RBP9.72□□□□□ -0.85
VPS50-214ENST00000477935 CARD14Q9BXL6 1004 aa9.72□□□□□ -0.85
VPS50-214ENST00000477935 GPR37L1O60883 481 aa9.71□□□□□ -0.86
VPS50-214ENST00000477935 FAM174AQ8TBP5 190 aa9.71□□□□□ -0.86
VPS50-214ENST00000477935 ARHGAP9Q9BRR9 750 aa9.71□□□□□ -0.86
VPS50-214ENST00000477935 FAM187AA6NFU0 413 aa9.7□□□□□ -0.86
VPS50-214ENST00000477935 ALDH1A1P00352 501 aa9.7□□□□□ -0.86
VPS50-214ENST00000477935 PTK2Q05397 1052 aa9.7□□□□□ -0.86
VPS50-214ENST00000477935 OCSTAMPQ9BR26 566 aa9.7□□□□□ -0.86
VPS50-214ENST00000477935 C1QTNF2Q9BXJ5 285 aa9.7□□□□□ -0.86
VPS50-214ENST00000477935 GPSM3Q9Y4H4 160 aa9.7□□□□□ -0.86
VPS50-214ENST00000477935 TLL2Q9Y6L7 1015 aa9.7□□□□□ -0.86
VPS50-214ENST00000477935 J3QL48 77 aa9.69□□□□□ -0.86
VPS50-214ENST00000477935 TBC1D2BQ9UPU7 963 aa9.69□□□□□ -0.86
VPS50-214ENST00000477935 SMPD1P17405 629 aa9.68□□□□□ -0.86
VPS50-214ENST00000477935 FLIIQ13045 1269 aa9.68□□□□□ -0.86
VPS50-214ENST00000477935 ERFEQ4G0M1 354 aa9.68□□□□□ -0.86
VPS50-214ENST00000477935 PKDCCQ504Y2 493 aa9.68□□□□□ -0.86
VPS50-214ENST00000477935 Q6ZNB5 142 aa9.68□□□□□ -0.86
VPS50-214ENST00000477935 ZBTB33Q86T24 672 aa9.68□□□□□ -0.86
VPS50-214ENST00000477935 MPNDQ8N594 471 aa9.68□□□□□ -0.86
VPS50-214ENST00000477935 TRMT44Q8IYL2 757 aaKnown RBP9.67□□□□□ -0.86
VPS50-214ENST00000477935 PRM3Q9NNZ6 103 aa9.67□□□□□ -0.86
VPS50-214ENST00000477935 DGAT1O75907 488 aa9.66□□□□□ -0.86
VPS50-214ENST00000477935 ARID5BQ14865 1188 aa9.66□□□□□ -0.86
VPS50-214ENST00000477935 ADAM32Q8TC27 787 aa9.66□□□□□ -0.86
VPS50-214ENST00000477935 CDK15Q96Q40 435 aa9.66□□□□□ -0.86
VPS50-214ENST00000477935 ZBBXA8MT70 800 aa9.65□□□□□ -0.86
VPS50-214ENST00000477935 FBXO45P0C2W1 286 aa9.65□□□□□ -0.86
VPS50-214ENST00000477935 GDPD2Q9HCC8 539 aa9.65□□□□□ -0.86
VPS50-214ENST00000477935 ADH1CP00326 375 aa9.64□□□□□ -0.87
VPS50-214ENST00000477935 MAP4K5Q9Y4K4 846 aa9.64□□□□□ -0.87
VPS50-214ENST00000477935 WASF2Q9Y6W5 498 aa9.64□□□□□ -0.87
VPS50-214ENST00000477935 SLC10A4Q96EP9 437 aa9.63□□□□□ -0.87
VPS50-214ENST00000477935 COG6Q9Y2V7 657 aa9.63□□□□□ -0.87
VPS50-214ENST00000477935 AVPP01185 164 aa9.62□□□□□ -0.87
VPS50-214ENST00000477935 ABL2P42684 1182 aa9.62□□□□□ -0.87
VPS50-214ENST00000477935 VASH1Q7L8A9 365 aaPredicted RBP9.62□□□□□ -0.87
VPS50-214ENST00000477935 HPS1Q92902 700 aa9.62□□□□□ -0.87
VPS50-214ENST00000477935 UBTFP17480 764 aaKnown RBP9.61□□□□□ -0.87
VPS50-214ENST00000477935 GRM5P41594 1212 aa9.61□□□□□ -0.87
VPS50-214ENST00000477935 MYT1Q01538 1121 aa9.61□□□□□ -0.87
VPS50-214ENST00000477935 NR1H3Q13133 447 aa9.61□□□□□ -0.87
VPS50-214ENST00000477935 IRF5Q13568 498 aa9.61□□□□□ -0.87
VPS50-214ENST00000477935 POM121Q96HA1 1249 aa9.61□□□□□ -0.87
VPS50-214ENST00000477935 CDV3Q9UKY7 258 aaKnown RBP9.61□□□□□ -0.87
VPS50-214ENST00000477935 LCE2BO14633 110 aa9.6□□□□□ -0.87
VPS50-214ENST00000477935 FSHRP23945 695 aa9.59□□□□□ -0.87
VPS50-214ENST00000477935 NR5A1Q13285 461 aa9.59□□□□□ -0.87
VPS50-214ENST00000477935 NNTQ13423 1086 aa9.59□□□□□ -0.87
VPS50-214ENST00000477935 DZIP3Q86Y13 1208 aaKnown RBP9.59□□□□□ -0.87
VPS50-214ENST00000477935 TRAF7Q6Q0C0 670 aa9.58□□□□□ -0.88
VPS50-214ENST00000477935 KCTD15Q96SI1 283 aaPredicted RBP9.58□□□□□ -0.88
VPS50-214ENST00000477935 PCDHB9Q9Y5E1 797 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms