RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 CABP2Q9NPB3 220 aa31.06■■■□□ 2.56
COL9A3-211ENST00000477612 RGS12O14924 1447 aa31.06■■■□□ 2.56
COL9A3-211ENST00000477612 HAP1P54257 671 aaPredicted RBP31.05■■■□□ 2.56
COL9A3-211ENST00000477612 PLCH1Q4KWH8 1693 aa31.04■■■□□ 2.56
COL9A3-211ENST00000477612 PPIP5K1Q6PFW1 1433 aa31.04■■■□□ 2.56
COL9A3-211ENST00000477612 UNC5CLQ8IV45 518 aa31.03■■■□□ 2.56
COL9A3-211ENST00000477612 EVC2Q86UK5 1308 aa31.02■■■□□ 2.56
COL9A3-211ENST00000477612 PAK3O75914 559 aaPredicted RBP31.01■■■□□ 2.55
COL9A3-211ENST00000477612 SBNO2Q9Y2G9 1366 aa31.01■■■□□ 2.55
COL9A3-211ENST00000477612 CARD11Q9BXL7 1154 aa31■■■□□ 2.55
COL9A3-211ENST00000477612 BRD4O60885 1362 aaPredicted RBP30.98■■■□□ 2.55
COL9A3-211ENST00000477612 GJD4Q96KN9 370 aaPredicted RBP30.98■■■□□ 2.55
COL9A3-211ENST00000477612 COL14A1Q05707 1796 aaKnown RBP30.97■■■□□ 2.55
COL9A3-211ENST00000477612 FAM83GA6ND36 823 aa30.97■■■□□ 2.55
COL9A3-211ENST00000477612 PHRF1Q9P1Y6 1649 aaKnown RBP30.97■■■□□ 2.55
COL9A3-211ENST00000477612 PLEKHG5O94827 1062 aa30.96■■■□□ 2.55
COL9A3-211ENST00000477612 CABP1Q9NZU7 370 aa30.95■■■□□ 2.55
COL9A3-211ENST00000477612 GLI3P10071 1580 aa30.95■■■□□ 2.54
COL9A3-211ENST00000477612 NRAPQ86VF7 1730 aa30.94■■■□□ 2.54
COL9A3-211ENST00000477612 UPF1Q92900 1129 aaKnown RBP eCLIP30.94■■■□□ 2.54
COL9A3-211ENST00000477612 CLSPNQ9HAW4 1339 aa30.93■■■□□ 2.54
COL9A3-211ENST00000477612 VPS72Q15906 364 aa30.91■■■□□ 2.54
COL9A3-211ENST00000477612 AKAP12Q02952 1782 aa30.91■■■□□ 2.54
COL9A3-211ENST00000477612 USP6P35125 1406 aa30.9■■■□□ 2.54
COL9A3-211ENST00000477612 ATAD2Q6PL18 1390 aa30.89■■■□□ 2.54
COL9A3-211ENST00000477612 SSH2Q76I76 1423 aa30.89■■■□□ 2.53
COL9A3-211ENST00000477612 ABTB2Q8N961 1025 aa30.88■■■□□ 2.53
COL9A3-211ENST00000477612 ZNF692Q9BU19 519 aaPredicted RBP30.86■■■□□ 2.53
COL9A3-211ENST00000477612 PCGF6Q9BYE7 350 aa30.86■■■□□ 2.53
COL9A3-211ENST00000477612 TIMELESSQ9UNS1 1208 aa30.86■■■□□ 2.53
COL9A3-211ENST00000477612 USP19O94966 1318 aa30.86■■■□□ 2.53
COL9A3-211ENST00000477612 BTG4Q9NY30 223 aa30.85■■■□□ 2.53
COL9A3-211ENST00000477612 NRKQ7Z2Y5 1582 aa30.84■■■□□ 2.53
COL9A3-211ENST00000477612 ONECUT3O60422 494 aaPredicted RBP30.84■■■□□ 2.53
COL9A3-211ENST00000477612 NUTM2GQ5VZR2 741 aa30.84■■■□□ 2.53
COL9A3-211ENST00000477612 NLRP13Q86W25 1043 aa30.83■■■□□ 2.53
COL9A3-211ENST00000477612 CPSF1Q10570 1443 aaKnown RBP30.82■■■□□ 2.52
COL9A3-211ENST00000477612 KIAA0232Q92628 1395 aa30.82■■■□□ 2.52
COL9A3-211ENST00000477612 BRWD3Q6RI45 1802 aa30.82■■■□□ 2.52
COL9A3-211ENST00000477612 PUS7Q96PZ0 661 aaKnown RBP30.81■■■□□ 2.52
COL9A3-211ENST00000477612 PRDM11Q9NQV5 511 aa30.81■■■□□ 2.52
COL9A3-211ENST00000477612 PIK3C2AO00443 1686 aa30.79■■■□□ 2.52
COL9A3-211ENST00000477612 CPDO75976 1380 aa30.79■■■□□ 2.52
COL9A3-211ENST00000477612 MON2Q7Z3U7 1717 aa30.78■■■□□ 2.52
COL9A3-211ENST00000477612 ZC3H6P61129 1189 aaKnown RBP30.77■■■□□ 2.52
COL9A3-211ENST00000477612 TESK2Q96S53 571 aa30.77■■■□□ 2.52
COL9A3-211ENST00000477612 SLC24A1O60721 1099 aa30.76■■■□□ 2.51
COL9A3-211ENST00000477612 SLIT3O75094 1523 aa30.75■■■□□ 2.51
COL9A3-211ENST00000477612 GCP02774 474 aa30.75■■■□□ 2.51
COL9A3-211ENST00000477612 LMO7Q8WWI1 1683 aa30.74■■■□□ 2.51
COL9A3-211ENST00000477612 TTC21BQ7Z4L5 1316 aa30.74■■■□□ 2.51
COL9A3-211ENST00000477612 ST20-MTHFSA0A0A6YYL1 179 aa30.74■■■□□ 2.51
COL9A3-211ENST00000477612 CCDC9Q9Y3X0 531 aaKnown RBP30.74■■■□□ 2.51
COL9A3-211ENST00000477612 EP400Q96L91 3159 aa30.74■■■□□ 2.51
COL9A3-211ENST00000477612 NLRP6P59044 892 aa30.73■■■□□ 2.51
COL9A3-211ENST00000477612 CHRNA2Q15822 529 aa30.73■■■□□ 2.51
COL9A3-211ENST00000477612 SPATA31A5Q5VU36 1347 aa30.73■■■□□ 2.51
COL9A3-211ENST00000477612 SPATA31A7Q8IWB4 1347 aa30.73■■■□□ 2.51
COL9A3-211ENST00000477612 TTC21AQ8NDW8 1320 aa30.73■■■□□ 2.51
COL9A3-211ENST00000477612 CD163L1Q9NR16 1453 aa30.72■■■□□ 2.51
COL9A3-211ENST00000477612 SEPT12Q8IYM1 358 aa30.72■■■□□ 2.51
COL9A3-211ENST00000477612 KTN1Q86UP2 1357 aaKnown RBP30.7■■■□□ 2.51
COL9A3-211ENST00000477612 CAMTA1Q9Y6Y1 1673 aa30.7■■■□□ 2.5
COL9A3-211ENST00000477612 USP54Q70EL1 1684 aa30.67■■■□□ 2.5
COL9A3-211ENST00000477612 SLC12A5Q9H2X9 1139 aa30.66■■■□□ 2.5
COL9A3-211ENST00000477612 USP47Q96K76 1375 aa30.66■■■□□ 2.5
COL9A3-211ENST00000477612 COL18A1P39060 1754 aa30.65■■■□□ 2.5
COL9A3-211ENST00000477612 CCDC125Q86Z20 511 aa30.65■■■□□ 2.5
COL9A3-211ENST00000477612 SPATA31A1Q5TZJ5 1347 aa30.65■■■□□ 2.5
COL9A3-211ENST00000477612 THSD7AQ9UPZ6 1657 aa30.65■■■□□ 2.5
COL9A3-211ENST00000477612 FAM98CQ17RN3 349 aaKnown RBP30.64■■■□□ 2.5
COL9A3-211ENST00000477612 TMC1Q8TDI8 760 aa30.63■■■□□ 2.49
COL9A3-211ENST00000477612 NINLQ9Y2I6 1382 aa30.63■■■□□ 2.49
COL9A3-211ENST00000477612 USP31Q70CQ4 1352 aa30.62■■■□□ 2.49
COL9A3-211ENST00000477612 HDGFL2Q7Z4V5 671 aaPredicted RBP30.61■■■□□ 2.49
COL9A3-211ENST00000477612 KCNH5Q8NCM2 988 aa30.61■■■□□ 2.49
COL9A3-211ENST00000477612 STRN4Q9NRL3 753 aa30.61■■■□□ 2.49
COL9A3-211ENST00000477612 AATKQ6ZMQ8 1374 aa30.61■■■□□ 2.49
COL9A3-211ENST00000477612 KRT27Q7Z3Y8 459 aa30.6■■■□□ 2.49
COL9A3-211ENST00000477612 TERF2IPQ9NYB0 399 aa30.6■■■□□ 2.49
COL9A3-211ENST00000477612 EDC4Q6P2E9 1401 aaKnown RBP30.59■■■□□ 2.49
COL9A3-211ENST00000477612 EVA1CP58658 441 aa30.59■■■□□ 2.49
COL9A3-211ENST00000477612 COL5A2P05997 1499 aaPredicted RBP30.58■■■□□ 2.49
COL9A3-211ENST00000477612 A0A1W2PP64 1363 aa30.58■■■□□ 2.49
COL9A3-211ENST00000477612 CCER1Q8TC90 406 aaPredicted RBP30.57■■■□□ 2.48
COL9A3-211ENST00000477612 NFAT5O94916 1531 aa30.57■■■□□ 2.48
COL9A3-211ENST00000477612 TMF1P82094 1093 aa30.56■■■□□ 2.48
COL9A3-211ENST00000477612 ARHGEF25Q86VW2 580 aa30.56■■■□□ 2.48
COL9A3-211ENST00000477612 LARP1Q6PKG0 1096 aaKnown RBP30.55■■■□□ 2.48
COL9A3-211ENST00000477612 BARGINQ6ZT62 677 aa30.55■■■□□ 2.48
COL9A3-211ENST00000477612 RGPD5Q99666 1765 aa30.55■■■□□ 2.48
COL9A3-211ENST00000477612 SUGP2Q8IX01 1082 aaKnown RBP eCLIP30.54■■■□□ 2.48
COL9A3-211ENST00000477612 BLMP54132 1417 aaPredicted RBP30.54■■■□□ 2.48
COL9A3-211ENST00000477612 A0A0G2JS52 829 aa30.52■■■□□ 2.48
COL9A3-211ENST00000477612 MYT1Q01538 1121 aa30.52■■■□□ 2.48
COL9A3-211ENST00000477612 THRAP3Q9Y2W1 955 aaKnown RBP30.52■■■□□ 2.48
COL9A3-211ENST00000477612 NME9Q86XW9 330 aa30.51■■■□□ 2.47
COL9A3-211ENST00000477612 ZRANB1Q9UGI0 708 aa30.51■■■□□ 2.47
COL9A3-211ENST00000477612 ABCC6O95255 1503 aa30.51■■■□□ 2.47
COL9A3-211ENST00000477612 AXIN2Q9Y2T1 843 aa30.5■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms