RNA–Protein interactions for RNA: ENST00000477572.1

VPS50-213, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-213ENST00000477572 WNT7BP56706 349 aa10.85□□□□□ -0.67
VPS50-213ENST00000477572 SH3BP2P78314 561 aa10.85□□□□□ -0.67
VPS50-213ENST00000477572 TUSC1Q2TAM9 212 aa10.85□□□□□ -0.67
VPS50-213ENST00000477572 FBXO31Q5XUX0 539 aaPredicted RBP10.85□□□□□ -0.67
VPS50-213ENST00000477572 SKIV2LQ15477 1246 aaKnown RBP10.84□□□□□ -0.67
VPS50-213ENST00000477572 SH3D19Q5HYK7 790 aa10.83□□□□□ -0.68
VPS50-213ENST00000477572 SNIP1Q8TAD8 396 aaKnown RBP10.83□□□□□ -0.68
VPS50-213ENST00000477572 EHBP1Q8NDI1 1231 aa10.82□□□□□ -0.68
VPS50-213ENST00000477572 IL27Q8NEV9 243 aa10.82□□□□□ -0.68
VPS50-213ENST00000477572 SMPD1P17405 629 aa10.81□□□□□ -0.68
VPS50-213ENST00000477572 HELBQ8NG08 1087 aaPredicted RBP10.81□□□□□ -0.68
VPS50-213ENST00000477572 ALDH1A1P00352 501 aa10.8□□□□□ -0.68
VPS50-213ENST00000477572 F12P00748 615 aaPredicted RBP10.8□□□□□ -0.68
VPS50-213ENST00000477572 BRPF1P55201 1214 aaPredicted RBP10.8□□□□□ -0.68
VPS50-213ENST00000477572 CTDSPL2Q05D32 466 aa10.8□□□□□ -0.68
VPS50-213ENST00000477572 ZNF511Q8NB15 262 aa10.79□□□□□ -0.68
VPS50-213ENST00000477572 AAASQ9NRG9 546 aa10.79□□□□□ -0.68
VPS50-213ENST00000477572 DACH1Q9UI36 760 aa10.78□□□□□ -0.68
VPS50-213ENST00000477572 PRKCSHP14314 528 aaPredicted RBP10.77□□□□□ -0.69
VPS50-213ENST00000477572 ZNF787Q6DD87 383 aa10.77□□□□□ -0.69
VPS50-213ENST00000477572 FOXJ1Q92949 421 aa10.77□□□□□ -0.69
VPS50-213ENST00000477572 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.77□□□□□ -0.69
VPS50-213ENST00000477572 POTECB2RU33 542 aa10.76□□□□□ -0.69
VPS50-213ENST00000477572 SIAH2O43255 324 aa10.76□□□□□ -0.69
VPS50-213ENST00000477572 LRRN4Q8WUT4 740 aa10.76□□□□□ -0.69
VPS50-213ENST00000477572 HPS1Q92902 700 aa10.76□□□□□ -0.69
VPS50-213ENST00000477572 TLL2Q9Y6L7 1015 aa10.75□□□□□ -0.69
VPS50-213ENST00000477572 AXIN1O15169 862 aa10.74□□□□□ -0.69
VPS50-213ENST00000477572 AP1G2O75843 785 aa10.74□□□□□ -0.69
VPS50-213ENST00000477572 AGERQ15109 404 aa10.74□□□□□ -0.69
VPS50-213ENST00000477572 AVPP01185 164 aa10.73□□□□□ -0.69
VPS50-213ENST00000477572 WASF2Q9Y6W5 498 aa10.71□□□□□ -0.69
VPS50-213ENST00000477572 C4orf48Q5BLP8 95 aa10.7□□□□□ -0.7
VPS50-213ENST00000477572 PPP2R2DQ66LE6 453 aa10.7□□□□□ -0.7
VPS50-213ENST00000477572 PCMTD1Q96MG8 357 aaPredicted RBP10.7□□□□□ -0.7
VPS50-213ENST00000477572 VARSP26640 1264 aaKnown RBP10.69□□□□□ -0.7
VPS50-213ENST00000477572 ARID5BQ14865 1188 aa10.69□□□□□ -0.7
VPS50-213ENST00000477572 NR6A1Q15406 480 aa10.68□□□□□ -0.7
VPS50-213ENST00000477572 CTC1Q2NKJ3 1217 aa10.68□□□□□ -0.7
VPS50-213ENST00000477572 CRIPAKQ8N1N5 446 aa10.68□□□□□ -0.7
VPS50-213ENST00000477572 RFC5P40937 340 aa10.67□□□□□ -0.7
VPS50-213ENST00000477572 FAM174AQ8TBP5 190 aa10.67□□□□□ -0.7
VPS50-213ENST00000477572 MAGEB6P1A0A0J9YX57 407 aa10.66□□□□□ -0.7
VPS50-213ENST00000477572 SMCPP49901 116 aaPredicted RBP10.66□□□□□ -0.7
VPS50-213ENST00000477572 BPHLQ86WA6 291 aaPredicted RBP10.66□□□□□ -0.7
VPS50-213ENST00000477572 ARMC2Q8NEN0 867 aa10.66□□□□□ -0.7
VPS50-213ENST00000477572 EPS8L1Q8TE68 723 aa10.66□□□□□ -0.7
VPS50-213ENST00000477572 GMPR2Q9P2T1 348 aaKnown RBP10.66□□□□□ -0.7
VPS50-213ENST00000477572 CARD14Q9BXL6 1004 aa10.65□□□□□ -0.7
VPS50-213ENST00000477572 HMX1Q9NP08 348 aaPredicted RBP10.65□□□□□ -0.7
VPS50-213ENST00000477572 USP17L8P0C7I0 530 aa10.64□□□□□ -0.71
VPS50-213ENST00000477572 NBPF14Q5TI25 921 aa10.64□□□□□ -0.71
VPS50-213ENST00000477572 GOPCQ9HD26 462 aa10.64□□□□□ -0.71
VPS50-213ENST00000477572 NNTQ13423 1086 aa10.62□□□□□ -0.71
VPS50-213ENST00000477572 SH3BP5LQ7L8J4 393 aa10.62□□□□□ -0.71
VPS50-213ENST00000477572 ATP13A2Q9NQ11 1180 aa10.62□□□□□ -0.71
VPS50-213ENST00000477572 FKBPLQ9UIM3 349 aa10.62□□□□□ -0.71
VPS50-213ENST00000477572 C11orf95C9JLR9 678 aaPredicted RBP10.6□□□□□ -0.71
VPS50-213ENST00000477572 CAPN5O15484 640 aaPredicted RBP10.6□□□□□ -0.71
VPS50-213ENST00000477572 BMP1P13497 986 aa10.6□□□□□ -0.71
VPS50-213ENST00000477572 SH3RF1Q7Z6J0 888 aa10.6□□□□□ -0.71
VPS50-213ENST00000477572 ADH1CP00326 375 aa10.59□□□□□ -0.71
VPS50-213ENST00000477572 ZNF775Q96BV0 537 aaPredicted RBP10.59□□□□□ -0.71
VPS50-213ENST00000477572 MPNDQ8N594 471 aa10.58□□□□□ -0.72
VPS50-213ENST00000477572 CDK15Q96Q40 435 aa10.58□□□□□ -0.72
VPS50-213ENST00000477572 GRM5P41594 1212 aa10.57□□□□□ -0.72
VPS50-213ENST00000477572 WDR4P57081 412 aaKnown RBP10.57□□□□□ -0.72
VPS50-213ENST00000477572 ARHGAP9Q9BRR9 750 aa10.57□□□□□ -0.72
VPS50-213ENST00000477572 C1QTNF2Q9BXJ5 285 aa10.57□□□□□ -0.72
VPS50-213ENST00000477572 NR3C2P08235 984 aa10.56□□□□□ -0.72
VPS50-213ENST00000477572 SNRPBP14678 240 aaKnown RBP10.56□□□□□ -0.72
VPS50-213ENST00000477572 ERFEQ4G0M1 354 aa10.56□□□□□ -0.72
VPS50-213ENST00000477572 TMEM259Q4ZIN3 620 aa10.56□□□□□ -0.72
VPS50-213ENST00000477572 PDXDC2PQ6P474 469 aa10.56□□□□□ -0.72
VPS50-213ENST00000477572 VASH1Q7L8A9 365 aaPredicted RBP10.55□□□□□ -0.72
VPS50-213ENST00000477572 TRIM46Q7Z4K8 759 aa10.55□□□□□ -0.72
VPS50-213ENST00000477572 GPKOWQ92917 476 aaPredicted RBP eCLIP10.55□□□□□ -0.72
VPS50-213ENST00000477572 TIMP2P16035 220 aa10.54□□□□□ -0.72
VPS50-213ENST00000477572 FSHRP23945 695 aa10.54□□□□□ -0.72
VPS50-213ENST00000477572 ZBTB33Q86T24 672 aa10.54□□□□□ -0.72
VPS50-213ENST00000477572 OCSTAMPQ9BR26 566 aa10.54□□□□□ -0.72
VPS50-213ENST00000477572 TRIM34Q9BYJ4 488 aa10.54□□□□□ -0.72
VPS50-213ENST00000477572 ZFAND3Q9H8U3 227 aa10.54□□□□□ -0.72
VPS50-213ENST00000477572 ZIC2O95409 532 aaPredicted RBP10.52□□□□□ -0.73
VPS50-213ENST00000477572 NR5A1Q13285 461 aa10.52□□□□□ -0.73
VPS50-213ENST00000477572 ITPKCQ96DU7 683 aa10.52□□□□□ -0.73
VPS50-213ENST00000477572 KLF16Q9BXK1 252 aaPredicted RBP10.52□□□□□ -0.73
VPS50-213ENST00000477572 PTK2Q05397 1052 aa10.51□□□□□ -0.73
VPS50-213ENST00000477572 TRMT44Q8IYL2 757 aaKnown RBP10.51□□□□□ -0.73
VPS50-213ENST00000477572 ADAM32Q8TC27 787 aa10.51□□□□□ -0.73
VPS50-213ENST00000477572 SLC10A4Q96EP9 437 aa10.5□□□□□ -0.73
VPS50-213ENST00000477572 TRIM47Q96LD4 638 aa10.5□□□□□ -0.73
VPS50-213ENST00000477572 SENP2Q9HC62 589 aa10.5□□□□□ -0.73
VPS50-213ENST00000477572 ZC3H4Q9UPT8 1303 aaKnown RBP10.5□□□□□ -0.73
VPS50-213ENST00000477572 PNMA1Q8ND90 353 aa10.48□□□□□ -0.73
VPS50-213ENST00000477572 GJD4Q96KN9 370 aaPredicted RBP10.48□□□□□ -0.73
VPS50-213ENST00000477572 ZFP42Q96MM3 310 aa10.48□□□□□ -0.73
VPS50-213ENST00000477572 SNRKQ9NRH2 765 aa10.48□□□□□ -0.73
VPS50-213ENST00000477572 MAP4K5Q9Y4K4 846 aa10.48□□□□□ -0.73
VPS50-213ENST00000477572 RAB15P59190 212 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms