RNA–Protein interactions for RNA: ENST00000477538.1

VHL-203, Transcript of von Hippel-Lindau tumor suppressor, humanhuman

TSL 1 (best)

Gene VHL, Length 958 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VHL-203ENST00000477538 DDX17Q92841 729 aaKnown RBP22.24■■□□□ 1.15
VHL-203ENST00000477538 BRD4O60885 1362 aaPredicted RBP22.24■■□□□ 1.15
VHL-203ENST00000477538 SSH2Q76I76 1423 aa22.23■■□□□ 1.15
VHL-203ENST00000477538 XPCQ01831 940 aaPredicted RBP22.22■■□□□ 1.15
VHL-203ENST00000477538 KRT28Q7Z3Y7 464 aa22.22■■□□□ 1.15
VHL-203ENST00000477538 USP54Q70EL1 1684 aa22.22■■□□□ 1.15
VHL-203ENST00000477538 MARF1Q9Y4F3 1742 aaKnown RBP22.22■■□□□ 1.15
VHL-203ENST00000477538 COL16A1Q07092 1604 aaPredicted RBP22.21■■□□□ 1.15
VHL-203ENST00000477538 PER1O15534 1290 aaPredicted RBP22.21■■□□□ 1.15
VHL-203ENST00000477538 KNSTRNQ9Y448 316 aa22.21■■□□□ 1.15
VHL-203ENST00000477538 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.19■■□□□ 1.14
VHL-203ENST00000477538 TTC21BQ7Z4L5 1316 aa22.19■■□□□ 1.14
VHL-203ENST00000477538 SBNO1A3KN83 1393 aa22.18■■□□□ 1.14
VHL-203ENST00000477538 SOS2Q07890 1332 aaPredicted RBP22.18■■□□□ 1.14
VHL-203ENST00000477538 TTC21AQ8NDW8 1320 aa22.18■■□□□ 1.14
VHL-203ENST00000477538 CGNL1Q0VF96 1302 aa22.17■■□□□ 1.14
VHL-203ENST00000477538 PAK3O75914 559 aaPredicted RBP22.17■■□□□ 1.14
VHL-203ENST00000477538 TNS3Q68CZ2 1445 aa22.16■■□□□ 1.14
VHL-203ENST00000477538 CRYBG1Q9Y4K1 1723 aa22.15■■□□□ 1.14
VHL-203ENST00000477538 AMER1Q5JTC6 1135 aaPredicted RBP22.14■■□□□ 1.13
VHL-203ENST00000477538 ABCA3Q99758 1704 aa22.14■■□□□ 1.13
VHL-203ENST00000477538 MAP2P11137 1827 aaKnown RBP22.13■■□□□ 1.13
VHL-203ENST00000477538 NME9Q86XW9 330 aa22.13■■□□□ 1.13
VHL-203ENST00000477538 PHRF1Q9P1Y6 1649 aaKnown RBP22.13■■□□□ 1.13
VHL-203ENST00000477538 NSD2O96028 1365 aa22.12■■□□□ 1.13
VHL-203ENST00000477538 NPC1L1Q9UHC9 1359 aa22.12■■□□□ 1.13
VHL-203ENST00000477538 SPATA31A3Q5VYP0 1347 aa22.12■■□□□ 1.13
VHL-203ENST00000477538 FYB1O15117 783 aa22.12■■□□□ 1.13
VHL-203ENST00000477538 SHPRHQ149N8 1683 aa22.11■■□□□ 1.13
VHL-203ENST00000477538 ABTB2Q8N961 1025 aa22.11■■□□□ 1.13
VHL-203ENST00000477538 COL22A1Q8NFW1 1626 aaPredicted RBP22.1■■□□□ 1.13
VHL-203ENST00000477538 OVOS2A0A0J9YW53 1432 aa22.1■■□□□ 1.13
VHL-203ENST00000477538 MED1Q15648 1581 aaPredicted RBP22.1■■□□□ 1.13
VHL-203ENST00000477538 OVOS2Q6IE36 1432 aa22.1■■□□□ 1.13
VHL-203ENST00000477538 LMOD2Q6P5Q4 547 aa22.1■■□□□ 1.13
VHL-203ENST00000477538 GGNBP2Q9H3C7 697 aa22.1■■□□□ 1.13
VHL-203ENST00000477538 ARHGEF10O15013 1369 aa22.1■■□□□ 1.13
VHL-203ENST00000477538 CNGB1Q14028 1251 aaPredicted RBP22.09■■□□□ 1.13
VHL-203ENST00000477538 CC2D1BQ5T0F9 858 aaKnown RBP22.09■■□□□ 1.13
VHL-203ENST00000477538 DIEXFQ68CQ4 756 aaKnown RBP22.09■■□□□ 1.13
VHL-203ENST00000477538 USP31Q70CQ4 1352 aa22.09■■□□□ 1.13
VHL-203ENST00000477538 LTN1O94822 1766 aa22.08■■□□□ 1.13
VHL-203ENST00000477538 LRRC59Q96AG4 307 aaKnown RBP22.08■■□□□ 1.13
VHL-203ENST00000477538 ZRANB1Q9UGI0 708 aa22.08■■□□□ 1.13
VHL-203ENST00000477538 NLRP6P59044 892 aa22.07■■□□□ 1.12
VHL-203ENST00000477538 NUTM2GQ5VZR2 741 aa22.07■■□□□ 1.12
VHL-203ENST00000477538 COG3Q96JB2 828 aa22.06■■□□□ 1.12
VHL-203ENST00000477538 SLIT3O75094 1523 aa22.06■■□□□ 1.12
VHL-203ENST00000477538 NLRP13Q86W25 1043 aa22.05■■□□□ 1.12
VHL-203ENST00000477538 PNPLA6Q8IY17 1366 aa22.03■■□□□ 1.12
VHL-203ENST00000477538 MORC1Q86VD1 984 aa22.03■■□□□ 1.12
VHL-203ENST00000477538 FBXO41Q8TF61 875 aa22.03■■□□□ 1.12
VHL-203ENST00000477538 PARD3Q8TEW0 1356 aa22.02■■□□□ 1.12
VHL-203ENST00000477538 HSPA1LP34931 641 aa22.02■■□□□ 1.12
VHL-203ENST00000477538 USP19O94966 1318 aa22.02■■□□□ 1.12
VHL-203ENST00000477538 ANP32CO43423 234 aa22.01■■□□□ 1.11
VHL-203ENST00000477538 NFAT5O94916 1531 aa22.01■■□□□ 1.11
VHL-203ENST00000477538 PLEKHG5O94827 1062 aa22■■□□□ 1.11
VHL-203ENST00000477538 PRKRIP1Q9H875 184 aaPredicted RBP21.99■■□□□ 1.11
VHL-203ENST00000477538 JCADQ9P266 1359 aa21.99■■□□□ 1.11
VHL-203ENST00000477538 RGPD5Q99666 1765 aa21.98■■□□□ 1.11
VHL-203ENST00000477538 RALBP1Q15311 655 aa21.98■■□□□ 1.11
VHL-203ENST00000477538 TNNT2P45379 298 aaPredicted RBP21.97■■□□□ 1.11
VHL-203ENST00000477538 SOX12O15370 315 aa21.96■■□□□ 1.11
VHL-203ENST00000477538 KCNH5Q8NCM2 988 aa21.96■■□□□ 1.11
VHL-203ENST00000477538 CABLES1Q8TDN4 633 aa21.96■■□□□ 1.11
VHL-203ENST00000477538 AATKQ6ZMQ8 1374 aa21.95■■□□□ 1.1
VHL-203ENST00000477538 PEAK1Q9H792 1746 aa21.94■■□□□ 1.1
VHL-203ENST00000477538 GCP02774 474 aa21.94■■□□□ 1.1
VHL-203ENST00000477538 HAP1P54257 671 aaPredicted RBP21.93■■□□□ 1.1
VHL-203ENST00000477538 COL18A1P39060 1754 aa21.92■■□□□ 1.1
VHL-203ENST00000477538 FBLN1P23142 703 aa21.92■■□□□ 1.1
VHL-203ENST00000477538 MYBBP1AQ9BQG0 1328 aaKnown RBP21.91■■□□□ 1.1
VHL-203ENST00000477538 PPP2R1AP30153 589 aa21.91■■□□□ 1.1
VHL-203ENST00000477538 SMG6Q86US8 1419 aaKnown RBP21.89■■□□□ 1.1
VHL-203ENST00000477538 COL14A1Q05707 1796 aaKnown RBP21.89■■□□□ 1.1
VHL-203ENST00000477538 PLCH1Q4KWH8 1693 aa21.89■■□□□ 1.1
VHL-203ENST00000477538 RRS1Q15050 365 aaKnown RBP21.89■■□□□ 1.09
VHL-203ENST00000477538 SPATA31A6Q5VVP1 1343 aa21.88■■□□□ 1.09
VHL-203ENST00000477538 ZC3H6P61129 1189 aaKnown RBP21.88■■□□□ 1.09
VHL-203ENST00000477538 CPDO75976 1380 aa21.87■■□□□ 1.09
VHL-203ENST00000477538 MAP3K19Q56UN5 1328 aa21.87■■□□□ 1.09
VHL-203ENST00000477538 ABCC6O95255 1503 aa21.87■■□□□ 1.09
VHL-203ENST00000477538 POLKQ9UBT6 870 aa21.87■■□□□ 1.09
VHL-203ENST00000477538 LMO7Q8WWI1 1683 aa21.87■■□□□ 1.09
VHL-203ENST00000477538 KIAA0232Q92628 1395 aa21.87■■□□□ 1.09
VHL-203ENST00000477538 CDK12Q9NYV4 1490 aaPredicted RBP21.86■■□□□ 1.09
VHL-203ENST00000477538 NUTM2BA6NNL0 878 aaPredicted RBP21.86■■□□□ 1.09
VHL-203ENST00000477538 NUTM2EB1AL46 878 aaPredicted RBP21.86■■□□□ 1.09
VHL-203ENST00000477538 ARHGEF25Q86VW2 580 aa21.86■■□□□ 1.09
VHL-203ENST00000477538 NUTM2AQ8IVF1 878 aaPredicted RBP21.86■■□□□ 1.09
VHL-203ENST00000477538 EMILIN1Q9Y6C2 1016 aa21.86■■□□□ 1.09
VHL-203ENST00000477538 ZBTB7CA1YPR0 619 aa21.85■■□□□ 1.09
VHL-203ENST00000477538 RTL1A6NKG5 1358 aa21.85■■□□□ 1.09
VHL-203ENST00000477538 RGPD2P0DJD1 1756 aa21.84■■□□□ 1.09
VHL-203ENST00000477538 LRP6O75581 1613 aa21.84■■□□□ 1.09
VHL-203ENST00000477538 NWD2Q9ULI1 1742 aa21.84■■□□□ 1.09
VHL-203ENST00000477538 PPM1GO15355 546 aaPredicted RBP21.84■■□□□ 1.09
VHL-203ENST00000477538 MTHFSP49914 203 aa21.84■■□□□ 1.09
VHL-203ENST00000477538 MIER1Q8N108 512 aa21.84■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms