RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 NPC1L1Q9UHC9 1359 aa18.01■□□□□ 0.47
HDAC6-220ENST00000477528 NUTM2GQ5VZR2 741 aa18.01■□□□□ 0.47
HDAC6-220ENST00000477528 SSH1Q8WYL5 1049 aa18■□□□□ 0.47
HDAC6-220ENST00000477528 MSNP26038 577 aaKnown RBP18■□□□□ 0.47
HDAC6-220ENST00000477528 DNTTIP2Q5QJE6 756 aaKnown RBP18■□□□□ 0.47
HDAC6-220ENST00000477528 SKAP1Q86WV1 359 aa18■□□□□ 0.47
HDAC6-220ENST00000477528 C1orf115Q9H7X2 142 aa18■□□□□ 0.47
HDAC6-220ENST00000477528 ALDH1L2Q3SY69 923 aa18■□□□□ 0.47
HDAC6-220ENST00000477528 NOL8Q76FK4 1167 aaKnown RBP18■□□□□ 0.47
HDAC6-220ENST00000477528 ABTB2Q8N961 1025 aa18■□□□□ 0.47
HDAC6-220ENST00000477528 SLC26A8Q96RN1 970 aa18■□□□□ 0.47
HDAC6-220ENST00000477528 WASLO00401 505 aaPredicted RBP17.99■□□□□ 0.47
HDAC6-220ENST00000477528 MYO5CQ9NQX4 1742 aa17.99■□□□□ 0.47
HDAC6-220ENST00000477528 KDM5CP41229 1560 aa17.99■□□□□ 0.47
HDAC6-220ENST00000477528 INSRP06213 1382 aa17.99■□□□□ 0.47
HDAC6-220ENST00000477528 TMEM57Q8N5G2 664 aa17.99■□□□□ 0.47
HDAC6-220ENST00000477528 CCDC30Q5VVM6 783 aa17.99■□□□□ 0.47
HDAC6-220ENST00000477528 CARD14Q9BXL6 1004 aa17.99■□□□□ 0.47
HDAC6-220ENST00000477528 C9orf78Q9NZ63 289 aaPredicted RBP17.98■□□□□ 0.47
HDAC6-220ENST00000477528 PLEKHH1Q9ULM0 1364 aa17.98■□□□□ 0.47
HDAC6-220ENST00000477528 GNAI3P08754 354 aa17.97■□□□□ 0.47
HDAC6-220ENST00000477528 POGZQ7Z3K3 1410 aa17.97■□□□□ 0.47
HDAC6-220ENST00000477528 IFT57Q9NWB7 429 aa17.97■□□□□ 0.47
HDAC6-220ENST00000477528 NME9Q86XW9 330 aa17.97■□□□□ 0.47
HDAC6-220ENST00000477528 CHMP3Q9Y3E7 222 aa17.96■□□□□ 0.47
HDAC6-220ENST00000477528 RNF123Q5XPI4 1314 aa17.96■□□□□ 0.47
HDAC6-220ENST00000477528 CHD1LQ86WJ1 897 aa17.96■□□□□ 0.47
HDAC6-220ENST00000477528 NEXNQ0ZGT2 675 aa17.96■□□□□ 0.46
HDAC6-220ENST00000477528 CCDC27Q2M243 656 aa17.96■□□□□ 0.46
HDAC6-220ENST00000477528 DDX49Q9Y6V7 483 aaKnown RBP17.96■□□□□ 0.46
HDAC6-220ENST00000477528 PREX2Q70Z35 1606 aa17.96■□□□□ 0.46
HDAC6-220ENST00000477528 SLC4A2P04920 1241 aa17.95■□□□□ 0.46
HDAC6-220ENST00000477528 ZNF330Q9Y3S2 320 aaPredicted RBP17.95■□□□□ 0.46
HDAC6-220ENST00000477528 UHRF1BP1LA0JNW5 1464 aa17.95■□□□□ 0.46
HDAC6-220ENST00000477528 IL16Q14005 1332 aa17.95■□□□□ 0.46
HDAC6-220ENST00000477528 ADCY10Q96PN6 1610 aa17.95■□□□□ 0.46
HDAC6-220ENST00000477528 KDM5DQ9BY66 1539 aa17.95■□□□□ 0.46
HDAC6-220ENST00000477528 DDX58O95786 925 aaKnown RBP17.95■□□□□ 0.46
HDAC6-220ENST00000477528 HSP90AB4PQ58FF6 505 aa17.95■□□□□ 0.46
HDAC6-220ENST00000477528 EMILIN1Q9Y6C2 1016 aa17.95■□□□□ 0.46
HDAC6-220ENST00000477528 UBTFL1P0CB47 393 aaPredicted RBP17.94■□□□□ 0.46
HDAC6-220ENST00000477528 THUMPD2Q9BTF0 503 aaKnown RBP17.94■□□□□ 0.46
HDAC6-220ENST00000477528 DIAPH3Q9NSV4 1193 aa17.93■□□□□ 0.46
HDAC6-220ENST00000477528 FYB1O15117 783 aa17.93■□□□□ 0.46
HDAC6-220ENST00000477528 FRAT2O75474 233 aaPredicted RBP17.93■□□□□ 0.46
HDAC6-220ENST00000477528 RUFY2Q8WXA3 655 aa17.93■□□□□ 0.46
HDAC6-220ENST00000477528 CCT4P50991 539 aaKnown RBP17.93■□□□□ 0.46
HDAC6-220ENST00000477528 ANO2Q9NQ90 1003 aa17.93■□□□□ 0.46
HDAC6-220ENST00000477528 TTC37Q6PGP7 1564 aa17.92■□□□□ 0.46
HDAC6-220ENST00000477528 TTC5Q8N0Z6 440 aa17.92■□□□□ 0.46
HDAC6-220ENST00000477528 CSPP1Q1MSJ5 1256 aa17.92■□□□□ 0.46
HDAC6-220ENST00000477528 TRIM27P14373 513 aa17.92■□□□□ 0.46
HDAC6-220ENST00000477528 NUCB2P80303 420 aa17.91■□□□□ 0.46
HDAC6-220ENST00000477528 BLMP54132 1417 aaPredicted RBP17.91■□□□□ 0.46
HDAC6-220ENST00000477528 GNAI2P04899 355 aa17.91■□□□□ 0.46
HDAC6-220ENST00000477528 GORABQ5T7V8 394 aa17.91■□□□□ 0.46
HDAC6-220ENST00000477528 HTATSF1O43719 755 aaKnown RBP17.9■□□□□ 0.46
HDAC6-220ENST00000477528 ZMYM4Q5VZL5 1548 aa17.9■□□□□ 0.46
HDAC6-220ENST00000477528 IFIT2P09913 472 aaKnown RBP17.9■□□□□ 0.46
HDAC6-220ENST00000477528 FOXD4L5Q5VV16 416 aaPredicted RBP17.9■□□□□ 0.46
HDAC6-220ENST00000477528 FOXD4L4Q8WXT5 416 aaPredicted RBP17.9■□□□□ 0.46
HDAC6-220ENST00000477528 IGHDP01880 384 aa17.9■□□□□ 0.46
HDAC6-220ENST00000477528 ESCO1Q5FWF5 840 aa17.9■□□□□ 0.46
HDAC6-220ENST00000477528 RAPGEF4Q8WZA2 1011 aa17.89■□□□□ 0.46
HDAC6-220ENST00000477528 PLEKHO1Q53GL0 409 aaPredicted RBP17.89■□□□□ 0.45
HDAC6-220ENST00000477528 CDC42BPAQ5VT25 1732 aa17.89■□□□□ 0.45
HDAC6-220ENST00000477528 TAF7LQ5H9L4 462 aa17.88■□□□□ 0.45
HDAC6-220ENST00000477528 RPAP2Q8IXW5 612 aaPredicted RBP17.88■□□□□ 0.45
HDAC6-220ENST00000477528 ATP10AO60312 1499 aa17.88■□□□□ 0.45
HDAC6-220ENST00000477528 PHF14O94880 888 aa17.88■□□□□ 0.45
HDAC6-220ENST00000477528 RABEP1Q15276 862 aa17.87■□□□□ 0.45
HDAC6-220ENST00000477528 TAOK2Q9UL54 1235 aa17.87■□□□□ 0.45
HDAC6-220ENST00000477528 ABCC1P33527 1531 aa17.87■□□□□ 0.45
HDAC6-220ENST00000477528 GOLGA6L6A8MZA4 724 aa17.87■□□□□ 0.45
HDAC6-220ENST00000477528 G3BP1Q13283 466 aaKnown RBP eCLIP17.87■□□□□ 0.458e-6■□□□□ 9
HDAC6-220ENST00000477528 HDGFL1Q5TGJ6 251 aa17.87■□□□□ 0.45
HDAC6-220ENST00000477528 ERC2O15083 957 aa17.86■□□□□ 0.45
HDAC6-220ENST00000477528 ATP6V1DQ9Y5K8 247 aa17.86■□□□□ 0.45
HDAC6-220ENST00000477528 HSP90B1P14625 803 aaKnown RBP17.86■□□□□ 0.45
HDAC6-220ENST00000477528 DCTN1Q14203 1278 aa17.86■□□□□ 0.45
HDAC6-220ENST00000477528 ZKSCAN1P17029 563 aaPredicted RBP17.85■□□□□ 0.45
HDAC6-220ENST00000477528 LRRIQ1Q96JM4 1722 aa17.85■□□□□ 0.45
HDAC6-220ENST00000477528 ATF3P18847 181 aa17.85■□□□□ 0.45
HDAC6-220ENST00000477528 MCM10Q7L590 875 aa17.84■□□□□ 0.45
HDAC6-220ENST00000477528 ANKLE2Q86XL3 938 aa17.84■□□□□ 0.45
HDAC6-220ENST00000477528 SURF6O75683 361 aaKnown RBP17.84■□□□□ 0.45
HDAC6-220ENST00000477528 NLRP2Q9NX02 1062 aa17.84■□□□□ 0.45
HDAC6-220ENST00000477528 RIMS2Q9UQ26 1411 aa17.84■□□□□ 0.45
HDAC6-220ENST00000477528 TRPM2O94759 1503 aa17.83■□□□□ 0.45
HDAC6-220ENST00000477528 A0A1W2PP64 1363 aa17.83■□□□□ 0.45
HDAC6-220ENST00000477528 NPHP1O15259 732 aa17.83■□□□□ 0.45
HDAC6-220ENST00000477528 CHD1O14646 1710 aa17.83■□□□□ 0.44
HDAC6-220ENST00000477528 AMOTL2Q9Y2J4 779 aa17.83■□□□□ 0.44
HDAC6-220ENST00000477528 TNRQ92752 1358 aa17.83■□□□□ 0.44
HDAC6-220ENST00000477528 PLA2R1Q13018 1463 aa17.82■□□□□ 0.44
HDAC6-220ENST00000477528 TRAK2O60296 914 aa17.82■□□□□ 0.44
HDAC6-220ENST00000477528 SPINK5Q9NQ38 1064 aaPredicted RBP17.82■□□□□ 0.44
HDAC6-220ENST00000477528 KIAA2012Q0VF49 1180 aa17.82■□□□□ 0.44
HDAC6-220ENST00000477528 RIC3Q7Z5B4 369 aa17.82■□□□□ 0.44
HDAC6-220ENST00000477528 GNAT3A8MTJ3 354 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms